Wall clock time and date at job start Tue Mar 31 2020 05:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99999 * 2 1 4 4 H 1.48495 * 109.47019 * 270.00077 * 3 2 1 5 5 H 1.48495 * 109.47355 * 30.00252 * 3 2 1 6 6 H 1.48505 * 109.46703 * 150.00091 * 3 2 1 7 7 C 1.37874 * 119.99421 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99546 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00706 * 0.02562 * 7 2 1 10 10 N 1.46502 * 109.47576 * 180.02562 * 9 7 2 11 11 C 1.34773 * 120.00004 * 83.02516 * 10 9 7 12 12 O 1.21628 * 120.00026 * 180.39600 * 11 10 9 13 13 C 1.47353 * 120.00009 * 0.39095 * 11 10 9 14 14 C 1.47018 * 127.19617 * 351.32539 * 13 11 10 15 15 C 1.34177 * 105.95888 * 179.97438 * 14 13 11 16 16 O 1.34218 * 109.12691 * 359.97438 * 15 14 13 17 17 C 1.33658 * 110.90755 * 0.02562 * 16 15 14 18 18 C 1.50701 * 125.80090 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.50090 * 8.64314 * 18 17 16 20 20 C 1.52998 * 117.49629 * 300.01783 * 18 17 16 21 21 C 1.39973 * 119.99611 * 263.02273 * 10 9 7 22 22 C 1.38860 * 120.05019 * 351.40193 * 21 10 9 23 23 C 1.38112 * 119.95411 * 179.78653 * 22 21 10 24 24 C 1.38475 * 120.04218 * 0.46666 * 23 22 21 25 25 F 1.35102 * 119.94796 * 179.76082 * 24 23 22 26 26 C 1.38467 * 120.09805 * 359.78563 * 24 23 22 27 27 C 1.38116 * 120.04713 * 359.97438 * 26 24 23 28 28 H 0.97005 * 120.00354 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.47478 * 59.99466 * 9 7 2 30 30 H 1.09007 * 109.46709 * 299.99969 * 9 7 2 31 31 H 1.07998 * 127.02170 * 359.97085 * 14 13 11 32 32 H 1.08004 * 125.43842 * 180.02562 * 15 14 13 33 33 H 1.08998 * 115.54700 * 154.35799 * 18 17 16 34 34 H 1.09001 * 117.49877 * 0.02562 * 19 18 17 35 35 H 1.09003 * 117.50132 * 145.02474 * 19 18 17 36 36 H 1.09000 * 117.49790 * 214.98158 * 20 18 17 37 37 H 1.08999 * 117.50457 * 359.97438 * 20 18 17 38 38 H 1.08007 * 120.02273 * 0.02562 * 22 21 10 39 39 H 1.07999 * 119.97590 * 180.23133 * 23 22 21 40 40 H 1.07995 * 119.97688 * 179.97438 * 26 24 23 41 41 H 1.07996 * 120.02457 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 7 2.2029 -3.6127 -0.0015 11 6 2.7476 -4.0334 1.1573 12 8 3.5434 -4.9532 1.1566 13 6 2.3791 -3.3789 2.4250 14 6 1.5821 -2.1552 2.5947 15 6 1.5074 -1.9440 3.9176 16 8 2.1773 -2.9158 4.5566 17 6 2.7055 -3.7823 3.6868 18 6 3.5219 -4.9988 4.0399 19 6 3.6049 -5.3896 5.5168 20 6 4.8203 -4.7766 4.8182 21 6 2.5466 -4.2398 -1.2047 22 6 1.8585 -3.9315 -2.3708 23 6 2.2022 -4.5482 -3.5579 24 6 3.2258 -5.4804 -3.5838 25 9 3.5572 -6.0861 -4.7451 26 6 3.9098 -5.7932 -2.4212 27 6 3.5726 -5.1752 -1.2329 28 1 -0.4851 0.8401 0.0004 29 1 0.6245 -2.5563 -0.8919 30 1 0.6239 -2.5574 0.8881 31 1 1.1458 -1.5498 1.8139 32 1 0.9900 -1.1235 4.3926 33 1 3.5068 -5.8044 3.3058 34 1 3.0686 -4.7671 6.2331 35 1 3.6443 -6.4526 5.7547 36 1 5.6592 -5.4363 4.5965 37 1 5.0842 -3.7505 5.0745 38 1 1.0577 -3.2071 -2.3503 39 1 1.6698 -4.3059 -4.4657 40 1 4.7074 -6.5209 -2.4435 41 1 4.1060 -5.4198 -0.3262 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577254909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:50 Heat of formation + Delta-G solvation = 13.518669 kcal Electronic energy + Delta-G solvation = -28020.745059 eV Core-core repulsion = 23976.892012 eV Total energy + Delta-G solvation = -4043.853047 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -49.78603 -43.52368 -41.62641 -39.13351 -38.03991 -37.09139 -34.78837 -33.78477 -32.09172 -30.69272 -30.55230 -29.12762 -25.69088 -25.18041 -23.98525 -23.70482 -23.30362 -22.61594 -21.62604 -19.91200 -18.80244 -18.71754 -18.47355 -18.13960 -17.49318 -17.14626 -16.63206 -16.53461 -16.46677 -16.15823 -15.90479 -15.70174 -15.40378 -14.82166 -14.46879 -14.42072 -14.31288 -14.03965 -13.74905 -13.52314 -13.46603 -13.02409 -12.94410 -12.79499 -12.42899 -12.27909 -12.06859 -11.99335 -11.86444 -11.81133 -11.38279 -10.88603 -10.78003 -10.51241 -10.36741 -10.04823 -9.38575 -8.75559 -8.24737 -6.38784 -0.03229 0.30985 0.50229 1.28667 1.38620 1.42770 1.50444 1.81979 2.05463 2.21184 2.38074 2.77944 2.94295 3.03073 3.36297 3.46372 3.56429 3.81135 3.91393 3.97790 4.05047 4.06541 4.28097 4.35072 4.40257 4.51393 4.70806 4.73726 4.81864 4.87143 4.98612 5.05505 5.08501 5.13724 5.15593 5.21744 5.26099 5.32017 5.34545 5.61625 5.67769 5.71262 5.92276 6.11739 6.16979 6.33701 6.68809 7.10508 7.28454 8.77308 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.008174 B = 0.005730 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3424.603431 B = 4885.288079 C = 7703.656731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.039 3.961 3 Si 0.945 3.055 4 H -0.278 1.278 5 H -0.272 1.272 6 H -0.278 1.278 7 C -0.535 4.535 8 H 0.043 0.957 9 C 0.221 3.779 10 N -0.534 5.534 11 C 0.587 3.413 12 O -0.550 6.550 13 C -0.262 4.262 14 C -0.197 4.197 15 C -0.062 4.062 16 O -0.174 6.174 17 C 0.101 3.899 18 C -0.110 4.110 19 C -0.147 4.147 20 C -0.152 4.152 21 C 0.139 3.861 22 C -0.135 4.135 23 C -0.123 4.123 24 C 0.051 3.949 25 F -0.146 7.146 26 C -0.126 4.126 27 C -0.159 4.159 28 H 0.273 0.727 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.199 0.801 32 H 0.239 0.761 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.122 0.878 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.158 0.842 40 H 0.156 0.844 41 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.796 -7.554 5.882 10.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.163 4.163 3 Si 0.771 3.229 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.203 1.203 7 C -0.574 4.574 8 H 0.061 0.939 9 C 0.102 3.898 10 N -0.252 5.252 11 C 0.381 3.619 12 O -0.434 6.434 13 C -0.266 4.266 14 C -0.215 4.215 15 C -0.126 4.126 16 O -0.071 6.071 17 C 0.047 3.953 18 C -0.128 4.128 19 C -0.184 4.184 20 C -0.189 4.189 21 C 0.044 3.956 22 C -0.155 4.155 23 C -0.142 4.142 24 C 0.031 3.969 25 F -0.125 7.125 26 C -0.145 4.145 27 C -0.179 4.179 28 H 0.083 0.917 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.215 0.785 32 H 0.255 0.745 33 H 0.154 0.846 34 H 0.121 0.879 35 H 0.146 0.854 36 H 0.141 0.859 37 H 0.111 0.889 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.174 0.826 41 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 4.008 -7.860 6.227 10.799 hybrid contribution 0.049 1.389 -0.915 1.664 sum 4.057 -6.471 5.312 9.304 Atomic orbital electron populations 1.69966 1.06542 1.28619 1.49271 1.25371 0.95500 1.01278 0.94185 0.85741 0.78814 0.79992 0.78389 1.20348 1.19634 1.20276 1.21285 0.92851 0.90990 1.52246 0.93859 1.20111 0.87887 0.82112 0.99650 1.45725 1.42502 1.32579 1.04354 1.17583 0.79566 0.81463 0.83267 1.90291 1.35790 1.30962 1.86362 1.21012 1.11054 1.01689 0.92873 1.24731 1.00739 0.97261 0.98804 1.24485 1.01725 0.94606 0.91759 1.83650 1.54477 1.31510 1.37444 1.21961 0.95383 0.91790 0.86137 1.20722 1.00193 0.93529 0.98373 1.23176 1.00425 1.03438 0.91361 1.23136 0.91496 1.03096 1.01204 1.18427 0.95925 0.94950 0.86329 1.20940 1.01473 1.02156 0.90972 1.21058 0.97582 0.96519 0.99036 1.17743 0.99375 0.97832 0.81940 1.91446 1.92066 1.82105 1.46841 1.21283 1.01061 1.01668 0.90501 1.22530 0.97361 0.96882 1.01106 0.91706 0.94221 0.92474 0.78502 0.74520 0.84622 0.87922 0.85428 0.85946 0.88910 0.84543 0.82455 0.82599 0.80446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.41 13.21 21.45 0.28 -45.12 16 2 C 0.04 1.90 4.74 84.65 0.40 2.30 16 3 Si 0.94 40.00 29.54 68.60 2.03 42.02 16 4 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 7 C -0.54 -26.78 7.09 25.60 0.18 -26.60 16 8 H 0.04 2.32 7.81 -2.91 -0.02 2.30 16 9 C 0.22 10.39 4.45 85.63 0.38 10.77 16 10 N -0.53 -23.68 2.70 -638.96 -1.73 -25.41 16 11 C 0.59 25.63 7.54 86.64 0.65 26.29 16 12 O -0.55 -23.35 11.47 -4.12 -0.05 -23.40 16 13 C -0.26 -10.80 6.08 -19.00 -0.12 -10.92 16 14 C -0.20 -8.06 8.22 23.65 0.19 -7.87 16 15 C -0.06 -2.03 12.03 66.89 0.80 -1.22 16 16 O -0.17 -5.67 10.23 4.39 0.04 -5.62 16 17 C 0.10 3.53 6.85 25.26 0.17 3.71 16 18 C -0.11 -3.11 5.56 -11.54 -0.06 -3.18 16 19 C -0.15 -2.92 10.17 30.59 0.31 -2.61 16 20 C -0.15 -3.36 10.23 30.59 0.31 -3.05 16 21 C 0.14 5.73 6.48 38.14 0.25 5.98 16 22 C -0.14 -5.06 9.30 22.39 0.21 -4.85 16 23 C -0.12 -3.92 10.02 22.30 0.22 -3.69 16 24 C 0.05 1.62 7.30 22.38 0.16 1.78 16 25 F -0.15 -4.37 17.26 44.97 0.78 -3.60 16 26 C -0.13 -4.01 10.02 22.30 0.22 -3.78 16 27 C -0.16 -5.97 9.01 22.39 0.20 -5.77 16 28 H 0.27 12.99 8.31 -92.70 -0.77 12.22 16 29 H 0.04 1.91 5.64 -2.39 -0.01 1.90 16 30 H 0.06 2.77 4.78 -2.38 -0.01 2.76 16 31 H 0.20 9.07 3.08 -2.91 -0.01 9.06 16 32 H 0.24 5.76 8.06 -2.91 -0.02 5.74 16 33 H 0.14 4.11 6.84 -2.39 -0.02 4.09 16 34 H 0.10 2.01 7.96 -2.39 -0.02 1.99 16 35 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.12 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.14 5.27 5.88 -2.91 -0.02 5.25 16 39 H 0.16 4.10 8.06 -2.91 -0.02 4.08 16 40 H 0.16 4.02 8.06 -2.91 -0.02 3.99 16 41 H 0.18 6.98 4.61 -55.98 -0.26 6.72 16 Total: -1.00 -56.86 344.35 6.71 -50.15 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.85 Total: 33.69 kcal Atomic # 6 Polarization: -27.22 SS G_CDS: 4.50 Total: -22.72 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -1.44 Total: -70.53 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: 0.00 Total: -29.02 kcal Atomic # 9 Polarization: -4.37 SS G_CDS: 0.78 Total: -3.60 kcal Atomic # 14 Polarization: 40.00 SS G_CDS: 2.03 Total: 42.02 kcal Total: -56.86 6.71 -50.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577254909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.671 kcal (2) G-P(sol) polarization free energy of solvation -56.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds