Wall clock time and date at job start Tue Mar 31 2020 05:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35899 * 117.00260 * 2 1 4 4 C 1.38740 * 120.05661 * 180.02562 * 3 2 1 5 5 C 1.38142 * 119.94566 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05382 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.94414 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47060 * 359.97438 * 7 6 5 9 9 C 1.52997 * 109.47212 * 239.99785 * 7 6 5 10 10 O 1.42904 * 109.47396 * 64.99575 * 9 7 6 11 11 C 1.53002 * 109.47419 * 119.99922 * 7 6 5 12 12 N 1.46494 * 109.47345 * 185.00232 * 11 7 6 13 13 S 1.65601 * 120.00318 * 165.00060 * 12 11 7 14 14 O 1.42101 * 104.27992 * 181.07046 * 13 12 11 15 15 O 1.42104 * 104.27106 * 308.92495 * 13 12 11 16 16 C 1.81394 * 104.44920 * 64.99452 * 13 12 11 17 17 C 1.50701 * 109.47125 * 180.02562 * 16 13 12 18 18 H 1.08006 * 119.99940 * 359.97438 * 17 16 13 19 19 C 1.37877 * 120.00231 * 180.02562 * 17 16 13 20 20 N 1.31516 * 119.99665 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00187 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47340 * 89.99389 * 21 19 17 23 23 H 1.48502 * 109.47062 * 209.99564 * 21 19 17 24 24 H 1.48505 * 109.47143 * 329.99749 * 21 19 17 25 25 C 1.38271 * 120.11334 * 0.26483 * 6 5 4 26 26 C 1.38142 * 120.05176 * 359.46417 * 25 6 5 27 27 H 1.08988 * 109.47278 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46737 * 300.00337 * 1 2 3 29 29 H 1.09002 * 109.46928 * 59.99809 * 1 2 3 30 30 H 1.08000 * 120.02685 * 359.95949 * 4 3 2 31 31 H 1.07993 * 119.97531 * 180.02562 * 5 4 3 32 32 H 1.09001 * 109.47630 * 184.99895 * 9 7 6 33 33 H 1.09004 * 109.47346 * 305.00026 * 9 7 6 34 34 H 0.96691 * 114.00252 * 179.97438 * 10 9 7 35 35 H 1.09008 * 109.46873 * 305.00091 * 11 7 6 36 36 H 1.08997 * 109.47047 * 64.99780 * 11 7 6 37 37 H 0.97004 * 119.99592 * 344.99410 * 12 11 7 38 38 H 1.08997 * 109.47676 * 300.00300 * 16 13 12 39 39 H 1.09004 * 109.47428 * 60.00714 * 16 13 12 40 40 H 0.97005 * 119.99863 * 180.02562 * 20 19 17 41 41 H 1.07999 * 119.97170 * 179.70234 * 25 6 5 42 42 H 1.08002 * 120.02384 * 180.27566 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2848 -0.0005 5 6 4.0563 2.5168 -0.0011 6 6 3.3021 3.6757 -0.0005 7 6 3.9863 5.0184 -0.0005 8 1 5.0669 4.8756 -0.0005 9 6 3.5757 5.8000 1.2490 10 8 4.0620 5.1279 2.4126 11 6 3.5748 5.8006 -1.2495 12 7 4.3298 7.0545 -1.3112 13 16 4.3755 7.9251 -2.7192 14 8 5.2035 9.0393 -2.4156 15 8 4.7569 6.9760 -3.7057 16 6 2.6609 8.4579 -2.9778 17 6 2.5725 9.2687 -4.2450 18 1 3.4593 9.4461 -4.8355 19 6 1.3599 9.7849 -4.6500 20 7 0.2802 9.5693 -3.9306 21 14 1.2502 10.7894 -6.2211 22 1 0.9676 9.8875 -7.3665 23 1 0.1577 11.7873 -6.0954 24 1 2.5384 11.4919 -6.4505 25 6 1.9212 3.6047 0.0061 26 6 1.2917 2.3751 0.0010 27 1 -0.3633 -1.0275 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 4.0209 0.3798 -0.0003 31 1 5.1346 2.5749 -0.0019 32 1 3.9992 6.8035 1.2054 33 1 2.4887 5.8662 1.2953 34 1 3.8384 5.5687 3.2436 35 1 3.7866 5.2048 -2.1374 36 1 2.5081 6.0205 -1.2054 37 1 4.8028 7.3748 -0.5273 38 1 2.0170 7.5824 -3.0614 39 1 2.3383 9.0668 -2.1332 40 1 -0.5730 9.9322 -4.2157 41 1 1.3344 4.5114 0.0113 42 1 0.2130 2.3203 0.0016 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581380770.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:18 Heat of formation + Delta-G solvation = -146.198504 kcal Electronic energy + Delta-G solvation = -25861.402673 eV Core-core repulsion = 21933.694932 eV Total energy + Delta-G solvation = -3927.707741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.35469 -38.63119 -36.76000 -36.16301 -35.36220 -34.97579 -33.37515 -32.01548 -31.13292 -29.05047 -28.75769 -27.09248 -25.35809 -23.55070 -23.29575 -22.21887 -20.27084 -18.89543 -18.29672 -17.63519 -17.16649 -16.58175 -16.28228 -15.91485 -15.73459 -15.58545 -15.24724 -15.01223 -14.63508 -14.38899 -14.12900 -13.93210 -13.78394 -13.33893 -12.84356 -12.79853 -12.53612 -12.19221 -12.16782 -12.06517 -11.63999 -11.47265 -11.42404 -11.18625 -11.12466 -11.06829 -10.93494 -10.85556 -10.73615 -10.63419 -10.07402 -9.85471 -9.52061 -9.05856 -8.83037 -8.73714 -8.16320 -6.36602 -4.46861 1.25594 1.29267 1.38415 3.11370 3.19475 3.24944 3.30908 3.55163 3.68584 4.02738 4.21719 4.57259 4.65663 4.73116 4.79018 4.88617 4.92626 4.97746 4.98481 5.12704 5.21562 5.23699 5.26268 5.29045 5.39669 5.45860 5.53956 5.58009 5.78021 5.88063 6.00215 6.12145 6.21057 6.30526 6.58985 6.62617 6.66653 6.73790 7.25382 7.36010 7.41825 7.49767 7.72076 8.55202 9.21078 10.75172 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013102 B = 0.003127 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.607107 B = 8951.152203 C =10126.507962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.321 6.321 3 C 0.120 3.880 4 C -0.151 4.151 5 C -0.066 4.066 6 C -0.099 4.099 7 C -0.050 4.050 8 H 0.094 0.906 9 C 0.080 3.920 10 O -0.569 6.569 11 C 0.127 3.873 12 N -1.133 6.133 13 S 2.583 3.417 14 O -0.981 6.981 15 O -0.980 6.980 16 C -0.419 4.419 17 C -0.534 4.534 18 H 0.069 0.931 19 C 0.076 3.924 20 N -0.879 5.879 21 Si 0.904 3.096 22 H -0.273 1.273 23 H -0.281 1.281 24 H -0.266 1.266 25 C -0.074 4.074 26 C -0.204 4.204 27 H 0.097 0.903 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.377 0.623 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.408 0.592 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.268 0.732 41 H 0.127 0.873 42 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 -14.667 12.992 19.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.234 6.234 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.085 4.085 6 C -0.100 4.100 7 C -0.070 4.070 8 H 0.112 0.888 9 C 0.002 3.998 10 O -0.374 6.374 11 C 0.001 3.999 12 N -0.890 5.890 13 S 2.683 3.317 14 O -0.972 6.972 15 O -0.970 6.970 16 C -0.555 4.555 17 C -0.573 4.573 18 H 0.088 0.912 19 C -0.130 4.130 20 N -0.515 5.515 21 Si 0.730 3.270 22 H -0.199 1.199 23 H -0.206 1.206 24 H -0.191 1.191 25 C -0.092 4.092 26 C -0.223 4.223 27 H 0.116 0.884 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.224 0.776 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.240 0.760 38 H 0.102 0.898 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.144 0.856 42 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.690 -15.184 11.879 19.291 hybrid contribution -1.238 1.188 0.253 1.734 sum -0.548 -13.996 12.132 18.531 Atomic orbital electron populations 1.23039 0.78491 1.03759 1.01475 1.86047 1.21321 1.27158 1.88919 1.19029 0.92382 0.84051 0.97054 1.20374 0.91310 0.98545 1.06710 1.20846 0.99822 0.90837 0.96951 1.19472 0.93371 0.94208 1.02975 1.20278 1.01459 0.91915 0.93307 0.88795 1.22274 0.97926 0.94557 0.84998 1.86489 1.80537 1.54195 1.16211 1.21242 0.95727 0.84836 0.98127 1.55942 1.66337 1.34747 1.31969 1.05862 0.80101 0.73352 0.72347 1.93488 1.67274 1.53114 1.83294 1.93476 1.82992 1.61825 1.58734 1.27717 1.14502 1.07039 1.06234 1.20333 0.96127 1.34811 1.06079 0.91245 1.24920 0.95090 0.95430 0.97540 1.69947 0.99447 1.43884 1.38263 0.86375 0.78456 0.79818 0.82342 1.19886 1.20639 1.19075 1.20829 0.93982 0.97237 0.97139 1.21183 0.99961 0.92269 1.08889 0.88411 0.92714 0.92518 0.85362 0.85335 0.92857 0.93065 0.77644 0.89426 0.91326 0.75959 0.89841 0.89663 0.92247 0.85551 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.81 101.05 0.99 1.19 16 2 O -0.32 -3.53 10.50 -19.42 -0.20 -3.74 16 3 C 0.12 1.41 6.69 -39.21 -0.26 1.15 16 4 C -0.15 -1.74 9.99 -39.43 -0.39 -2.13 16 5 C -0.07 -0.77 9.66 -39.61 -0.38 -1.15 16 6 C -0.10 -1.19 4.55 -104.60 -0.48 -1.66 16 7 C -0.05 -0.58 2.38 -91.77 -0.22 -0.80 16 8 H 0.09 1.10 7.87 -51.93 -0.41 0.69 16 9 C 0.08 0.82 6.24 37.16 0.23 1.06 16 10 O -0.57 -5.81 13.41 -35.23 -0.47 -6.28 16 11 C 0.13 1.74 5.26 -4.04 -0.02 1.72 16 12 N -1.13 -17.22 5.74 -10.61 -0.06 -17.28 16 13 S 2.58 53.23 5.38 -107.50 -0.58 52.65 16 14 O -0.98 -22.71 18.08 -57.54 -1.04 -23.75 16 15 O -0.98 -22.82 17.50 -57.54 -1.01 -23.83 16 16 C -0.42 -9.76 5.83 36.01 0.21 -9.55 16 17 C -0.53 -14.51 9.13 -34.44 -0.31 -14.83 16 18 H 0.07 1.86 7.71 -52.48 -0.40 1.46 16 19 C 0.08 2.07 5.46 -17.82 -0.10 1.97 16 20 N -0.88 -24.32 13.29 55.43 0.74 -23.58 16 21 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 22 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 C -0.07 -0.85 8.70 -39.60 -0.34 -1.19 16 26 C -0.20 -2.27 9.04 -39.44 -0.36 -2.63 16 27 H 0.10 0.50 8.14 -51.94 -0.42 0.08 16 28 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 29 H 0.06 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.13 1.28 8.06 -52.49 -0.42 0.85 16 31 H 0.13 1.29 7.94 -52.49 -0.42 0.87 16 32 H 0.05 0.51 6.79 -51.93 -0.35 0.16 16 33 H 0.05 0.49 7.20 -51.93 -0.37 0.12 16 34 H 0.38 2.24 9.12 45.56 0.42 2.65 16 35 H 0.09 1.29 7.69 -51.92 -0.40 0.89 16 36 H 0.07 0.87 7.58 -51.93 -0.39 0.48 16 37 H 0.41 5.27 7.34 -34.47 -0.25 5.01 16 38 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 39 H 0.09 1.96 8.14 -51.92 -0.42 1.54 16 40 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 41 H 0.13 1.30 7.12 -52.49 -0.37 0.92 16 42 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 LS Contribution 366.28 15.07 5.52 5.52 Total: -1.00 -35.66 366.28 -8.47 -44.14 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -4.91 Total: 7.30 kcal Atomic # 6 Polarization: -25.42 SS G_CDS: -1.43 Total: -26.86 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.68 Total: -40.86 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -2.72 Total: -57.60 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 16 Polarization: 53.23 SS G_CDS: -0.58 Total: 52.65 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.66 -8.47 -44.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581380770.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.060 kcal (2) G-P(sol) polarization free energy of solvation -35.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds