Wall clock time and date at job start Tue Mar 31 2020 06:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47339 * 2 1 4 4 C 1.50704 * 109.47061 * 119.99963 * 2 1 3 5 5 N 1.30499 * 125.64734 * 299.97384 * 4 2 1 6 6 C 1.34129 * 109.25494 * 180.02562 * 5 4 2 7 7 S 1.76200 * 125.99061 * 180.02562 * 6 5 4 8 8 O 1.42096 * 106.39882 * 336.48042 * 7 6 5 9 9 O 1.42103 * 106.40193 * 203.56514 * 7 6 5 10 10 N 1.65593 * 107.22178 * 90.02459 * 7 6 5 11 11 C 1.47584 * 134.49803 * 89.99723 * 10 7 6 12 12 C 1.53946 * 86.12025 * 155.36171 * 11 10 7 13 13 O 1.42897 * 113.74068 * 269.15867 * 12 11 10 14 14 C 1.50700 * 113.74246 * 137.95222 * 12 11 10 15 15 H 1.07998 * 119.99659 * 4.91778 * 14 12 11 16 16 C 1.37870 * 120.00275 * 184.91298 * 14 12 11 17 17 N 1.31521 * 119.99939 * 13.83955 * 16 14 12 18 18 Si 1.86793 * 120.00241 * 193.83635 * 16 14 12 19 19 H 1.48503 * 109.47305 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.47166 * 299.99995 * 18 16 14 21 21 H 1.48499 * 109.46987 * 59.99962 * 18 16 14 22 22 C 1.47585 * 134.49149 * 270.00557 * 10 7 6 23 23 C 1.34668 * 108.02169 * 0.26158 * 6 5 4 24 24 N 1.35039 * 125.65065 * 119.99740 * 4 2 1 25 25 C 1.46505 * 126.40029 * 0.02562 * 24 4 2 26 26 H 1.08998 * 109.46793 * 59.99980 * 1 2 3 27 27 H 1.08996 * 109.47227 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46939 * 300.00069 * 1 2 3 29 29 H 1.08995 * 109.47607 * 239.99736 * 2 1 3 30 30 H 1.09001 * 109.47071 * 179.97438 * 3 2 1 31 31 H 1.08998 * 109.47194 * 299.99774 * 3 2 1 32 32 H 1.09000 * 109.47161 * 60.00067 * 3 2 1 33 33 H 1.09003 * 113.76727 * 41.05741 * 11 10 7 34 34 H 1.09000 * 113.76915 * 269.66644 * 11 10 7 35 35 H 0.96698 * 114.00098 * 171.44601 * 13 12 11 36 36 H 0.97007 * 119.99483 * 5.87247 * 17 16 14 37 37 H 1.08994 * 113.77423 * 90.33548 * 22 10 7 38 38 H 1.09010 * 113.76672 * 318.93394 * 22 10 7 39 39 H 1.07997 * 126.59499 * 179.69355 * 23 6 5 40 40 H 1.09006 * 109.46882 * 89.99667 * 25 24 4 41 41 H 1.08994 * 109.47713 * 210.00055 * 25 24 4 42 42 H 1.09000 * 109.46845 * 330.00105 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7863 -0.3617 2.4637 6 6 2.3940 -1.2204 3.2958 7 16 2.3522 -1.1613 5.0564 8 8 2.0654 0.1858 5.4058 9 8 3.5088 -1.8522 5.5086 10 7 1.0499 -2.0590 5.5463 11 6 0.8442 -3.4781 5.8956 12 6 -0.3492 -2.9899 6.7365 13 8 -0.0120 -2.6848 8.0912 14 6 -1.5724 -3.8620 6.6177 15 1 -1.5287 -4.7788 6.0485 16 6 -2.7473 -3.4897 7.2356 17 7 -2.8902 -2.2649 7.6931 18 14 -4.1362 -4.7246 7.4229 19 1 -5.2812 -4.0806 8.1155 20 1 -4.5688 -5.1905 6.0808 21 1 -3.6632 -5.8843 8.2207 22 6 -0.3716 -1.7613 5.8090 23 6 3.0459 -2.1326 2.5499 24 7 2.8119 -1.8130 1.2396 25 6 3.3188 -2.5291 0.0663 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6530 -3.9064 6.4877 34 1 0.5589 -4.1021 5.0486 35 1 -0.7232 -2.2562 8.5866 36 1 -2.2051 -1.6000 7.5213 37 1 -1.0140 -1.8810 4.9368 38 1 -0.5336 -0.8188 6.3322 39 1 3.6378 -2.9587 2.9152 40 1 4.2836 -2.1133 -0.2242 41 1 3.4363 -3.5854 0.3080 42 1 2.6136 -2.4212 -0.7578 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584665945.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:56 Heat of formation + Delta-G solvation = -33.384337 kcal Electronic energy + Delta-G solvation = -26972.516533 eV Core-core repulsion = 23081.993532 eV Total energy + Delta-G solvation = -3890.523001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.07 seconds Orbital eigenvalues (eV) -42.39605 -38.70560 -36.66455 -35.64743 -35.32598 -34.37205 -34.19586 -32.28265 -29.33961 -27.58756 -27.44074 -27.38671 -25.40586 -24.30093 -23.41845 -22.01118 -19.82458 -19.57395 -18.60309 -18.03371 -17.51660 -16.70980 -16.08331 -15.84727 -15.39177 -15.14738 -14.77054 -14.58965 -14.25359 -13.91066 -13.87206 -13.69016 -13.33200 -13.24807 -13.11376 -12.93497 -12.38677 -12.32496 -11.86576 -11.74667 -11.62205 -11.53982 -11.46982 -11.28238 -11.22516 -11.19551 -10.97406 -10.81977 -10.44132 -10.16765 -10.13121 -9.99776 -9.22455 -8.87965 -8.78043 -8.57624 -7.96864 -6.59487 -4.38785 0.84066 1.55528 2.39704 2.56193 3.34575 3.38765 3.53786 3.56977 4.03330 4.19698 4.26915 4.37523 4.39274 4.61085 4.67668 4.74589 4.84544 4.88617 4.92084 5.04477 5.25677 5.29604 5.42181 5.51570 5.62704 5.65017 5.84456 5.87615 5.89454 6.00450 6.05172 6.24343 6.24545 6.31198 6.55872 6.61438 6.82627 6.85432 7.38700 7.73082 7.76215 8.16281 8.53408 8.96945 9.31554 10.72057 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014558 B = 0.003864 C = 0.003505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.866610 B = 7244.823034 C = 7987.065701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.005 4.005 3 C -0.142 4.142 4 C 0.207 3.793 5 N -0.403 5.403 6 C -0.554 4.554 7 S 2.729 3.271 8 O -0.948 6.948 9 O -0.965 6.965 10 N -1.021 6.021 11 C 0.141 3.859 12 C 0.223 3.777 13 O -0.566 6.566 14 C -0.617 4.617 15 H 0.064 0.936 16 C 0.036 3.964 17 N -0.897 5.897 18 Si 1.067 2.933 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.284 1.284 22 C 0.102 3.898 23 C 0.059 3.941 24 N -0.456 5.456 25 C 0.065 3.935 26 H 0.065 0.935 27 H 0.055 0.945 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.375 0.625 36 H 0.271 0.729 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.192 0.808 40 H 0.081 0.919 41 H 0.092 0.908 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.141 -0.024 -18.392 20.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.026 4.026 3 C -0.201 4.201 4 C -0.059 4.059 5 N -0.120 5.120 6 C -0.763 4.763 7 S 2.817 3.183 8 O -0.939 6.939 9 O -0.955 6.955 10 N -0.862 5.862 11 C 0.016 3.984 12 C 0.179 3.821 13 O -0.373 6.373 14 C -0.656 4.656 15 H 0.082 0.918 16 C -0.170 4.170 17 N -0.533 5.533 18 Si 0.894 3.106 19 H -0.206 1.206 20 H -0.213 1.213 21 H -0.211 1.211 22 C -0.024 4.024 23 C -0.081 4.081 24 N -0.136 5.136 25 C -0.077 4.077 26 H 0.084 0.916 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.225 0.775 36 H 0.083 0.917 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.209 0.791 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.602 0.707 -17.393 19.417 hybrid contribution 1.512 -0.550 -1.828 2.435 sum 10.114 0.156 -19.221 21.721 Atomic orbital electron populations 1.21822 0.92589 1.02504 1.03241 1.19590 0.97071 0.95803 0.90088 1.21815 1.00909 0.94097 1.03235 1.23678 0.97164 0.88811 0.96238 1.70249 1.19700 1.23886 0.98126 1.34036 1.12596 1.03725 1.25948 1.01054 0.72404 0.73100 0.71707 1.93527 1.84525 1.34082 1.81720 1.93538 1.47376 1.75456 1.79121 1.60244 1.23813 1.21975 1.80167 1.22910 0.98130 0.80503 0.96879 1.20150 0.91892 0.90269 0.79766 1.86225 1.44133 1.82695 1.24246 1.22257 0.95572 1.09601 1.38122 0.91775 1.25953 0.99862 0.99034 0.92159 1.70908 1.36915 1.02324 1.43202 0.83590 0.75502 0.74874 0.76664 1.20600 1.21304 1.21072 1.23994 0.76838 1.01762 0.99797 1.22655 1.01847 1.01211 0.82432 1.45590 1.38063 1.23040 1.06949 1.22178 1.00862 0.97995 0.86672 0.91616 0.92586 0.90818 0.90085 0.92801 0.91595 0.90853 0.90486 0.89839 0.77539 0.91698 0.90074 0.91201 0.79093 0.90022 0.88968 0.89021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.18 37.16 0.34 -1.07 16 2 C -0.01 -0.05 3.25 -91.77 -0.30 -0.35 16 3 C -0.14 -1.33 9.18 37.16 0.34 -0.99 16 4 C 0.21 2.83 6.41 -155.42 -1.00 1.83 16 5 N -0.40 -7.19 11.25 -10.02 -0.11 -7.30 16 6 C -0.55 -9.84 7.13 -17.81 -0.13 -9.96 16 7 S 2.73 55.62 6.39 -107.50 -0.69 54.93 16 8 O -0.95 -22.25 17.99 -57.17 -1.03 -23.28 16 9 O -0.96 -20.28 17.81 -57.17 -1.02 -21.29 16 10 N -1.02 -21.58 4.11 -118.67 -0.49 -22.07 16 11 C 0.14 2.93 8.36 -2.97 -0.02 2.91 16 12 C 0.22 5.38 1.08 -90.84 -0.10 5.28 16 13 O -0.57 -14.31 13.45 -35.23 -0.47 -14.78 16 14 C -0.62 -15.77 8.56 -34.44 -0.29 -16.06 16 15 H 0.06 1.60 7.85 -52.49 -0.41 1.19 16 16 C 0.04 0.94 5.26 -17.82 -0.09 0.84 16 17 N -0.90 -24.29 12.80 55.43 0.71 -23.58 16 18 Si 1.07 23.00 29.93 -169.99 -5.09 17.92 16 19 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 20 H -0.29 -5.91 7.11 56.52 0.40 -5.51 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 C 0.10 2.32 7.40 -2.97 -0.02 2.30 16 23 C 0.06 0.82 11.31 -16.56 -0.19 0.64 16 24 N -0.46 -5.34 3.15 -121.27 -0.38 -5.72 16 25 C 0.07 0.39 10.83 59.85 0.65 1.04 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.08 0.55 6.73 -51.93 -0.35 0.20 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.08 1.55 8.09 -51.93 -0.42 1.13 16 35 H 0.38 9.33 6.95 45.56 0.32 9.64 16 36 H 0.27 7.24 5.52 -40.82 -0.23 7.01 16 37 H 0.08 1.81 8.09 -51.93 -0.42 1.39 16 38 H 0.07 1.63 7.80 -51.92 -0.41 1.22 16 39 H 0.19 2.10 8.06 -52.49 -0.42 1.68 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.39 7.05 -51.93 -0.37 0.02 16 LS Contribution 365.58 15.07 5.51 5.51 Total: -1.00 -35.17 365.58 -9.18 -44.35 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.30 Total: 8.92 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.81 Total: -13.59 kcal Atomic # 7 Polarization: -58.40 SS G_CDS: -0.27 Total: -58.67 kcal Atomic # 8 Polarization: -56.83 SS G_CDS: -2.52 Total: -59.35 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.09 Total: 17.92 kcal Atomic # 16 Polarization: 55.62 SS G_CDS: -0.69 Total: 54.93 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.17 -9.18 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584665945.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.961 kcal (2) G-P(sol) polarization free energy of solvation -35.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.07 seconds