Wall clock time and date at job start Tue Mar 31 2020 06:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00161 * 2 1 4 4 C 1.52999 * 109.47245 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47240 * 65.00184 * 4 3 2 6 6 C 1.46510 * 119.99568 * 269.99764 * 5 4 3 7 7 C 1.50697 * 109.46874 * 269.99760 * 6 5 4 8 8 H 1.07994 * 120.00616 * 0.02562 * 7 6 5 9 9 C 1.37877 * 119.99535 * 179.97438 * 7 6 5 10 10 N 1.31518 * 120.00438 * 0.02562 * 9 7 6 11 11 Si 1.86805 * 120.00059 * 180.02562 * 9 7 6 12 12 H 1.48509 * 109.46808 * 60.00404 * 11 9 7 13 13 H 1.48501 * 109.47194 * 180.02562 * 11 9 7 14 14 H 1.48496 * 109.47013 * 300.00714 * 11 9 7 15 15 C 1.34774 * 120.00149 * 89.99695 * 5 4 3 16 16 O 1.21284 * 119.99755 * 179.97438 * 15 5 4 17 17 C 1.50699 * 120.00118 * 0.02562 * 15 5 4 18 18 O 1.42895 * 109.46969 * 179.97438 * 17 15 5 19 19 C 1.42907 * 113.99581 * 179.97438 * 18 17 15 20 20 C 1.50707 * 109.46778 * 180.02562 * 19 18 17 21 21 N 1.29409 * 125.69372 * 89.97718 * 20 19 18 22 22 N 1.26396 * 116.47502 * 180.02562 * 21 20 19 23 23 C 1.29414 * 116.47623 * 359.97438 * 22 21 20 24 24 C 1.50695 * 125.70010 * 179.73746 * 23 22 21 25 25 S 1.71215 * 125.69448 * 269.99768 * 20 19 18 26 26 H 1.08997 * 109.46920 * 299.99296 * 1 2 3 27 27 H 1.08997 * 109.47479 * 59.99939 * 1 2 3 28 28 H 1.09004 * 109.47001 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.46738 * 59.99842 * 3 2 1 30 30 H 1.09000 * 109.46725 * 300.00670 * 3 2 1 31 31 H 1.09003 * 109.46724 * 305.00247 * 4 3 2 32 32 H 1.09001 * 109.46787 * 185.00168 * 4 3 2 33 33 H 1.08997 * 109.46942 * 30.00168 * 6 5 4 34 34 H 1.09000 * 109.46694 * 150.00106 * 6 5 4 35 35 H 0.96994 * 120.00551 * 180.02562 * 10 9 7 36 36 H 1.09004 * 109.46685 * 59.99527 * 17 15 5 37 37 H 1.09001 * 109.46854 * 299.99823 * 17 15 5 38 38 H 1.09000 * 109.47231 * 60.00178 * 19 18 17 39 39 H 1.09001 * 109.47136 * 299.99686 * 19 18 17 40 40 H 1.09001 * 109.47835 * 90.02159 * 24 23 22 41 41 H 1.09007 * 109.47583 * 210.02562 * 24 23 22 42 42 H 1.08996 * 109.47200 * 330.02073 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.1052 -0.8921 -1.3427 7 6 5.5010 -1.2977 -0.9449 8 1 6.2196 -0.5460 -0.6538 9 6 5.8603 -2.6289 -0.9517 10 7 4.9851 -3.5445 -1.3057 11 14 7.5903 -3.1319 -0.4579 12 1 7.8531 -2.6964 0.9374 13 1 7.7216 -4.6083 -0.5492 14 1 8.5714 -2.4907 -1.3697 15 6 4.2615 1.3338 -2.3218 16 8 4.6264 0.8203 -3.3582 17 6 4.1287 2.8320 -2.2291 18 8 4.4857 3.4202 -3.4815 19 6 4.3931 4.8462 -3.5012 20 6 4.7895 5.3564 -4.8628 21 7 3.9886 5.5423 -5.8621 22 7 4.5094 5.9777 -6.9283 23 6 5.7858 6.1897 -6.9021 24 6 6.6162 6.6996 -8.0516 25 16 6.3748 5.7864 -5.3458 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8899 30 1 1.6885 1.8464 -0.8899 31 1 3.8514 0.5681 0.8409 32 1 3.9785 2.1765 0.0890 33 1 3.3853 -1.3629 -0.6734 34 1 3.9120 -1.2115 -2.3668 35 1 5.2378 -4.4810 -1.3101 36 1 4.7913 3.2078 -1.4494 37 1 3.0982 3.0911 -1.9862 38 1 5.0606 5.2641 -2.7477 39 1 3.3678 5.1467 -3.2854 40 1 6.6500 7.7886 -8.0206 41 1 7.6283 6.3023 -7.9732 42 1 6.1712 6.3766 -8.9927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000586773847.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:47:00 Heat of formation + Delta-G solvation = -50.035143 kcal Electronic energy + Delta-G solvation = -25519.013290 eV Core-core repulsion = 21627.768256 eV Total energy + Delta-G solvation = -3891.245034 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.49983 -39.39334 -37.86849 -37.26816 -34.82655 -33.63713 -32.66676 -30.76324 -29.65076 -28.55830 -26.96933 -26.15514 -25.80744 -24.47623 -22.76324 -22.46276 -20.20566 -19.58300 -18.63362 -17.28584 -16.75001 -16.52110 -16.26815 -16.01020 -15.82073 -15.60541 -15.25723 -14.91362 -14.68874 -14.35934 -14.03699 -13.80577 -13.43524 -13.40510 -13.13407 -12.81759 -12.55394 -12.32797 -11.91980 -11.86223 -11.76811 -11.63316 -11.22606 -10.90916 -10.84837 -10.69111 -10.47427 -10.39978 -10.10712 -10.01822 -9.90584 -9.83556 -9.58325 -9.45420 -8.87568 -8.34490 -7.65278 -5.95829 -4.00347 0.10775 0.64242 1.11232 2.25772 3.19548 3.33037 3.36068 3.40517 3.44089 3.73018 4.00895 4.12205 4.37295 4.50439 4.55327 4.73199 4.95106 4.99193 5.00539 5.06380 5.15286 5.20355 5.26399 5.31265 5.38008 5.43462 5.46060 5.49503 5.53761 5.57023 5.60853 5.85112 6.17267 6.77030 7.25832 7.37792 7.55972 7.62485 8.01223 8.32299 8.32401 8.42504 8.95235 9.10089 9.63346 11.12235 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011328 B = 0.002983 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.236312 B = 9384.623844 C =11206.111364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.370 6.370 3 C 0.042 3.958 4 C 0.109 3.891 5 N -0.587 5.587 6 C 0.251 3.749 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.062 3.938 10 N -0.893 5.893 11 Si 0.896 3.104 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.504 3.496 16 O -0.517 6.517 17 C 0.043 3.957 18 O -0.352 6.352 19 C 0.141 3.859 20 C -0.017 4.017 21 N -0.239 5.239 22 N -0.263 5.263 23 C -0.021 4.021 24 C -0.074 4.074 25 S 0.197 5.803 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.053 0.947 30 H 0.044 0.956 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.048 0.952 34 H 0.040 0.960 35 H 0.263 0.737 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.399 22.721 -0.853 22.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.036 4.036 4 C -0.016 4.016 5 N -0.321 5.321 6 C 0.133 3.867 7 C -0.567 4.567 8 H 0.073 0.927 9 C -0.140 4.140 10 N -0.532 5.532 11 Si 0.724 3.276 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C 0.288 3.712 16 O -0.392 6.392 17 C -0.037 4.037 18 O -0.269 6.269 19 C 0.060 3.940 20 C -0.296 4.296 21 N -0.078 5.078 22 N -0.102 5.102 23 C -0.299 4.299 24 C -0.135 4.135 25 S 0.441 5.559 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.104 0.896 40 H 0.109 0.891 41 H 0.105 0.895 42 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -1.366 21.917 -1.755 22.030 hybrid contribution 0.456 0.022 0.563 0.725 sum -0.910 21.939 -1.193 21.990 Atomic orbital electron populations 1.22709 0.81931 1.02701 0.99139 1.88108 1.18812 1.26746 1.95128 1.23127 0.95272 0.85656 0.99540 1.21562 0.91301 0.98909 0.89812 1.48144 1.64630 1.09878 1.09415 1.19340 0.96816 0.71511 0.99033 1.21422 0.97443 0.92231 1.45584 0.92660 1.24916 0.97355 0.96407 0.95362 1.69933 1.34366 1.01016 1.47868 0.86593 0.84815 0.77313 0.78859 1.20308 1.21233 1.20268 1.19826 0.79479 0.87143 0.84714 1.90720 1.45048 1.74294 1.29094 1.22511 1.00625 0.94200 0.86345 1.88118 1.89137 1.16622 1.33039 1.20657 1.02061 0.83230 0.88025 1.28697 0.93627 1.05330 1.01950 1.71414 1.30267 1.11478 0.94690 1.71480 1.07495 1.13389 1.17811 1.29328 0.95393 1.04024 1.01177 1.20401 0.97707 1.01891 0.93467 1.83708 1.10528 1.55602 1.06106 0.94647 0.94539 0.89698 0.92922 0.93787 0.88590 0.90239 0.93380 0.94220 0.92754 0.90381 0.90650 0.90376 0.89551 0.89057 0.89511 0.88679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.23 9.53 -35.23 -0.34 -6.56 16 3 C 0.04 0.57 6.28 37.16 0.23 0.80 16 4 C 0.11 1.66 5.62 -4.04 -0.02 1.64 16 5 N -0.59 -12.42 2.42 -175.05 -0.42 -12.85 16 6 C 0.25 6.74 4.98 -5.19 -0.03 6.72 16 7 C -0.53 -15.18 9.39 -34.44 -0.32 -15.51 16 8 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.79 5.46 -17.82 -0.10 1.70 16 10 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 11 Si 0.90 22.14 29.54 -169.99 -5.02 17.11 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.50 10.73 7.75 -10.99 -0.09 10.65 16 16 O -0.52 -13.93 16.08 -14.36 -0.23 -14.16 16 17 C 0.04 0.63 4.97 36.01 0.18 0.81 16 18 O -0.35 -5.73 9.86 -55.14 -0.54 -6.27 16 19 C 0.14 1.60 6.54 36.01 0.24 1.83 16 20 C -0.02 -0.22 7.16 -13.30 -0.10 -0.32 16 21 N -0.24 -3.68 11.66 32.58 0.38 -3.30 16 22 N -0.26 -3.76 11.66 32.58 0.38 -3.38 16 23 C -0.02 -0.23 7.53 -13.30 -0.10 -0.33 16 24 C -0.07 -0.45 10.48 36.00 0.38 -0.08 16 25 S 0.20 1.97 23.04 -107.50 -2.48 -0.50 16 26 H 0.03 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.04 0.56 7.30 -51.93 -0.38 0.18 16 31 H 0.10 1.57 8.07 -51.93 -0.42 1.15 16 32 H 0.08 0.88 6.44 -51.93 -0.33 0.55 16 33 H 0.05 1.33 7.11 -51.93 -0.37 0.96 16 34 H 0.04 1.22 7.42 -51.93 -0.39 0.84 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.08 0.88 7.40 -51.93 -0.38 0.49 16 37 H 0.08 0.87 7.26 -51.93 -0.38 0.49 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 375.95 15.07 5.67 5.67 Total: -1.00 -39.66 375.95 -6.48 -46.14 By element: Atomic # 1 Polarization: 1.08 SS G_CDS: -6.00 Total: -4.91 kcal Atomic # 6 Polarization: 8.04 SS G_CDS: 1.39 Total: 9.43 kcal Atomic # 7 Polarization: -47.02 SS G_CDS: 1.07 Total: -45.94 kcal Atomic # 8 Polarization: -25.88 SS G_CDS: -1.11 Total: -26.99 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 1.97 SS G_CDS: -2.48 Total: -0.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -39.66 -6.48 -46.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000586773847.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.894 kcal (2) G-P(sol) polarization free energy of solvation -39.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds