Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46759 * 2 1 4 4 O 1.42898 * 109.47251 * 120.00149 * 2 1 3 5 5 C 1.52998 * 109.47450 * 240.00538 * 2 1 3 6 6 N 1.46496 * 109.47388 * 179.97438 * 5 2 1 7 7 C 1.46499 * 120.00094 * 275.00044 * 6 5 2 8 8 C 1.53001 * 109.47448 * 84.99500 * 7 6 5 9 9 O 1.42898 * 109.46811 * 65.00406 * 8 7 6 10 10 S 1.65603 * 120.00197 * 94.99398 * 6 5 2 11 11 O 1.42094 * 106.40273 * 203.54107 * 10 6 5 12 12 O 1.42098 * 106.40174 * 336.46431 * 10 6 5 13 13 C 1.76205 * 107.21526 * 90.00232 * 10 6 5 14 14 C 1.38657 * 119.87173 * 269.73073 * 13 10 6 15 15 C 1.38623 * 120.49518 * 179.72522 * 14 13 10 16 16 C 1.37634 * 120.24732 * 0.54734 * 15 14 13 17 17 C 1.40695 * 119.74924 * 359.72767 * 16 15 14 18 18 C 1.41388 * 120.24919 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00394 * 204.36397 * 18 17 16 20 20 C 1.39949 * 119.99842 * 24.37115 * 18 17 16 21 21 N 1.30824 * 120.00191 * 17.85870 * 20 18 17 22 22 Si 1.86795 * 120.00131 * 197.86410 * 20 18 17 23 23 H 1.48503 * 109.47340 * 89.99746 * 22 20 18 24 24 H 1.48500 * 109.47394 * 209.99774 * 22 20 18 25 25 H 1.48497 * 109.47175 * 329.99802 * 22 20 18 26 26 C 1.37596 * 119.87436 * 90.00206 * 13 10 6 27 27 H 1.08999 * 109.46796 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47230 * 299.99828 * 1 2 3 29 29 H 1.09000 * 109.47195 * 60.00305 * 1 2 3 30 30 H 0.96691 * 114.00248 * 60.00021 * 4 2 1 31 31 H 1.09007 * 109.46700 * 299.99498 * 5 2 1 32 32 H 1.08997 * 109.47106 * 59.99444 * 5 2 1 33 33 H 1.09002 * 109.47370 * 205.00127 * 7 6 5 34 34 H 1.09011 * 109.46820 * 324.99603 * 7 6 5 35 35 H 1.09001 * 109.47111 * 185.00117 * 8 7 6 36 36 H 1.09003 * 109.47063 * 305.00378 * 8 7 6 37 37 H 0.96707 * 113.99945 * 180.02562 * 9 8 7 38 38 H 1.07994 * 119.75627 * 359.97438 * 14 13 10 39 39 H 1.08000 * 119.86987 * 180.25692 * 15 14 13 40 40 H 1.08002 * 120.12594 * 179.71053 * 16 15 14 41 41 H 0.96996 * 120.00265 * 180.02562 * 21 20 18 42 42 H 1.07997 * 120.12864 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.0401 -0.7211 -1.2493 6 7 3.5050 -0.7206 -1.2496 7 6 4.2370 0.4295 -1.7859 8 6 4.3829 1.4943 -0.6970 9 8 5.1995 0.9860 0.3598 10 16 4.3337 -2.0199 -0.6434 11 8 5.6165 -1.5379 -0.2676 12 8 3.4525 -2.6714 0.2611 13 6 4.5947 -3.1406 -1.9779 14 6 3.6587 -4.1286 -2.2430 15 6 3.8482 -5.0136 -3.2931 16 6 4.9756 -4.9271 -4.0778 17 6 5.9349 -3.9321 -3.8144 18 6 7.0966 -3.8333 -4.6142 19 1 7.9891 -3.3738 -4.2157 20 6 7.0901 -4.3309 -5.9222 21 7 5.9541 -4.5626 -6.5282 22 14 8.7034 -4.6643 -6.8028 23 1 9.1322 -6.0612 -6.5383 24 1 8.5191 -4.4712 -8.2636 25 1 9.7414 -3.7255 -6.3065 26 6 5.7292 -3.0355 -2.7493 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.7211 -1.5952 1.2329 31 1 1.6768 -1.7489 -1.2493 32 1 1.6767 -0.2073 -2.1392 33 1 5.2254 0.1095 -2.1159 34 1 3.6893 0.8468 -2.6311 35 1 4.8483 2.3848 -1.1195 36 1 3.3986 1.7501 -0.3047 37 1 5.3349 1.6091 1.0868 38 1 2.7734 -4.2069 -1.6295 39 1 3.1106 -5.7767 -3.4932 40 1 5.1235 -5.6205 -4.8925 41 1 5.9495 -4.9079 -7.4347 42 1 6.4589 -2.2677 -2.5384 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589236991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = -155.343362 kcal Electronic energy + Delta-G solvation = -27440.569990 eV Core-core repulsion = 23512.465698 eV Total energy + Delta-G solvation = -3928.104292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -38.36943 -37.59982 -36.93826 -36.16018 -34.98572 -34.73187 -33.82694 -31.20892 -30.05533 -29.73526 -29.03039 -25.75621 -25.46223 -22.23685 -21.75907 -21.62497 -20.94445 -18.69498 -18.03052 -17.31630 -16.93615 -16.60695 -15.93356 -15.36327 -15.17322 -15.15498 -14.75260 -14.45120 -14.27941 -14.00987 -13.42589 -13.33795 -13.24043 -12.74309 -12.55864 -12.47048 -12.15371 -11.87282 -11.77188 -11.62209 -11.47782 -11.36498 -11.20228 -11.14607 -10.95171 -10.90232 -10.84365 -10.66591 -10.58621 -10.21640 -9.72945 -9.68406 -9.50735 -9.34419 -8.65939 -7.99100 -7.68600 -6.91969 -4.52386 1.15851 2.25767 2.64587 3.00241 3.04654 3.07798 3.55722 3.83626 4.35106 4.45283 4.50706 4.59381 4.72546 4.95850 5.00004 5.09144 5.19038 5.32923 5.35463 5.41642 5.44993 5.61208 5.63726 5.68239 5.83332 5.93045 6.06431 6.13346 6.18516 6.28651 6.67571 6.74822 6.79601 6.99339 7.08220 7.25386 7.41928 7.74876 7.83270 7.88540 7.94140 7.96488 8.42315 8.68459 8.74000 10.03506 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018654 B = 0.003888 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.696645 B = 7199.366518 C = 7764.893769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.081 3.919 3 H 0.098 0.902 4 O -0.556 6.556 5 C 0.092 3.908 6 N -0.987 5.987 7 C 0.125 3.875 8 C 0.053 3.947 9 O -0.544 6.544 10 S 2.698 3.302 11 O -0.945 6.945 12 O -0.975 6.975 13 C -0.641 4.641 14 C -0.151 4.151 15 C -0.121 4.121 16 C -0.121 4.121 17 C 0.092 3.908 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.911 3.089 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.260 1.260 26 C -0.126 4.126 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.385 0.615 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.048 0.952 36 H 0.046 0.954 37 H 0.369 0.631 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.124 0.876 41 H 0.283 0.717 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 9.898 5.373 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.019 3.981 3 H 0.115 0.885 4 O -0.364 6.364 5 C -0.034 4.034 6 N -0.821 5.821 7 C -0.001 4.001 8 C -0.026 4.026 9 O -0.347 6.347 10 S 2.793 3.207 11 O -0.935 6.935 12 O -0.966 6.966 13 C -0.731 4.731 14 C -0.172 4.172 15 C -0.141 4.141 16 C -0.141 4.141 17 C 0.088 3.912 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.736 3.264 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.184 1.184 26 C -0.147 4.147 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.235 0.765 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.214 0.786 38 H 0.121 0.879 39 H 0.115 0.885 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.053 9.789 5.709 13.902 hybrid contribution 0.153 -0.418 -1.267 1.343 sum -7.900 9.370 4.442 13.036 Atomic orbital electron populations 1.22489 0.96500 1.02829 1.02548 1.22448 0.92409 0.97244 0.85955 0.88475 1.86530 1.77413 1.30044 1.42435 1.22034 0.80099 1.02445 0.98827 1.57489 1.13515 1.31892 1.79208 1.21318 0.97767 0.86398 0.94587 1.22751 0.94117 0.95912 0.89861 1.86839 1.71660 1.44009 1.32193 1.01692 0.72989 0.72179 0.73882 1.93561 1.39372 1.79526 1.81058 1.93383 1.66894 1.75084 1.61195 1.30166 1.04901 1.16309 1.21721 1.20056 0.98537 0.98612 1.00017 1.20812 0.98077 0.98939 0.96257 1.21620 0.94562 0.98318 0.99570 1.17696 0.92919 0.89682 0.90880 1.19638 0.98467 1.34248 0.96693 0.89883 1.25930 0.97988 0.92668 0.97655 1.69783 1.27286 1.32089 1.12889 0.86248 0.81985 0.80033 0.78170 1.19143 1.20229 1.18392 1.20788 0.95583 1.00125 0.98188 0.91995 0.91771 0.91674 0.76496 0.89688 0.89883 0.88928 0.89302 0.93394 0.93576 0.78566 0.87856 0.88496 0.85792 0.90630 0.87144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.62 9.53 37.16 0.35 -1.26 16 2 C 0.08 0.92 3.63 -26.73 -0.10 0.82 16 3 H 0.10 1.04 5.60 -51.92 -0.29 0.75 16 4 O -0.56 -8.12 11.93 -54.63 -0.65 -8.78 16 5 C 0.09 1.15 5.13 -4.04 -0.02 1.13 16 6 N -0.99 -15.24 2.64 -114.38 -0.30 -15.55 16 7 C 0.13 1.70 5.84 -4.04 -0.02 1.68 16 8 C 0.05 0.64 7.25 37.16 0.27 0.90 16 9 O -0.54 -8.12 11.72 -54.45 -0.64 -8.76 16 10 S 2.70 53.63 5.44 -107.50 -0.58 53.05 16 11 O -0.94 -21.33 14.41 -65.29 -0.94 -22.28 16 12 O -0.97 -19.73 13.62 -65.35 -0.89 -20.62 16 13 C -0.64 -14.49 5.97 -39.66 -0.24 -14.72 16 14 C -0.15 -3.35 9.53 -39.28 -0.37 -3.72 16 15 C -0.12 -2.77 10.02 -39.66 -0.40 -3.17 16 16 C -0.12 -3.06 8.70 -38.87 -0.34 -3.39 16 17 C 0.09 2.41 5.58 -106.83 -0.60 1.81 16 18 C -0.46 -11.97 9.05 -37.74 -0.34 -12.31 16 19 H 0.08 2.08 7.91 -52.49 -0.42 1.67 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.80 -19.69 10.95 55.55 0.61 -19.09 16 22 Si 0.91 18.15 29.59 -169.99 -5.03 13.12 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.28 -5.37 7.11 56.52 0.40 -4.97 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 26 C -0.13 -3.10 9.26 -38.87 -0.36 -3.46 16 27 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.38 5.35 7.64 45.56 0.35 5.70 16 31 H 0.08 1.08 7.61 -51.92 -0.40 0.68 16 32 H 0.08 0.81 8.00 -51.93 -0.42 0.40 16 33 H 0.09 1.43 7.61 -51.93 -0.40 1.04 16 34 H 0.09 0.92 8.00 -51.92 -0.42 0.50 16 35 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.05 0.48 5.47 -51.93 -0.28 0.20 16 37 H 0.37 3.76 9.12 45.56 0.42 4.17 16 38 H 0.10 2.03 7.59 -52.49 -0.40 1.64 16 39 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 40 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 41 H 0.28 6.34 8.30 -40.82 -0.34 6.00 16 42 H 0.11 2.64 7.60 -52.49 -0.40 2.24 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -32.89 353.48 -9.57 -42.46 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -4.22 Total: 15.05 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: -2.25 Total: -33.96 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.31 Total: -34.63 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -3.12 Total: -60.42 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -5.03 Total: 13.12 kcal Atomic # 16 Polarization: 53.63 SS G_CDS: -0.58 Total: 53.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -32.89 -9.57 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589236991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.879 kcal (2) G-P(sol) polarization free energy of solvation -32.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds