Wall clock time and date at job start Tue Mar 31 2020 05:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47288 * 2 1 4 4 O 1.42895 * 109.47347 * 239.99509 * 2 1 3 5 5 C 1.53000 * 109.46712 * 119.99244 * 2 1 3 6 6 N 1.46502 * 109.47133 * 185.44957 * 5 2 1 7 7 C 1.46502 * 119.99405 * 65.41030 * 6 5 2 8 8 C 1.52995 * 109.47452 * 81.05210 * 7 6 5 9 9 O 1.42902 * 109.47407 * 64.73983 * 8 7 6 10 10 S 1.65597 * 120.00536 * 245.41095 * 6 5 2 11 11 O 1.42107 * 106.40073 * 203.54106 * 10 6 5 12 12 O 1.42107 * 106.39864 * 336.45645 * 10 6 5 13 13 C 1.76194 * 107.22008 * 89.99715 * 10 6 5 14 14 C 1.38649 * 119.87747 * 269.72898 * 13 10 6 15 15 C 1.38615 * 120.50039 * 179.72211 * 14 13 10 16 16 C 1.37641 * 120.25043 * 0.55225 * 15 14 13 17 17 C 1.40695 * 119.74011 * 359.72430 * 16 15 14 18 18 C 1.41390 * 120.24421 * 180.02562 * 17 16 15 19 19 H 1.07999 * 120.00722 * 206.83632 * 18 17 16 20 20 C 1.39949 * 119.99885 * 26.83614 * 18 17 16 21 21 N 1.30825 * 119.99845 * 13.28626 * 20 18 17 22 22 Si 1.86796 * 120.00130 * 193.28389 * 20 18 17 23 23 H 1.48496 * 109.47235 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47250 * 120.00177 * 22 20 18 25 25 H 1.48502 * 109.47084 * 240.00003 * 22 20 18 26 26 C 1.37603 * 119.87150 * 90.00301 * 13 10 6 27 27 H 1.08994 * 109.47661 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47075 * 300.00901 * 1 2 3 29 29 H 1.09005 * 109.46685 * 60.00164 * 1 2 3 30 30 H 0.96699 * 113.99928 * 300.00171 * 4 2 1 31 31 H 1.09002 * 109.47514 * 305.45574 * 5 2 1 32 32 H 1.09008 * 109.46951 * 65.45630 * 5 2 1 33 33 H 1.09007 * 109.46946 * 201.05261 * 7 6 5 34 34 H 1.09005 * 109.47572 * 321.04851 * 7 6 5 35 35 H 1.09001 * 109.47756 * 184.74381 * 8 7 6 36 36 H 1.09000 * 109.46943 * 304.74234 * 8 7 6 37 37 H 0.96698 * 113.99921 * 180.02562 * 9 8 7 38 38 H 1.08000 * 119.74777 * 359.97438 * 14 13 10 39 39 H 1.08003 * 119.87634 * 180.25649 * 15 14 13 40 40 H 1.07993 * 120.13212 * 179.74690 * 16 15 14 41 41 H 0.96999 * 120.00006 * 179.97438 * 21 20 18 42 42 H 1.08001 * 120.13016 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0399 -0.7211 1.2494 6 7 3.4990 -0.6086 1.3168 7 6 4.1244 0.7024 1.5076 8 6 4.0881 1.0738 2.9914 9 8 4.8924 0.1540 3.7325 10 16 4.4414 -1.9631 1.1774 11 8 5.6768 -1.6593 1.8106 12 8 3.6234 -3.0617 1.5562 13 6 4.7988 -2.1760 -0.5347 14 6 3.9543 -2.9385 -1.3270 15 6 4.2200 -3.1098 -2.6766 16 6 5.3338 -2.5323 -3.2428 17 6 6.2009 -1.7611 -2.4472 18 6 7.3477 -1.1626 -3.0178 19 1 8.2116 -0.9562 -2.4034 20 6 7.3636 -0.8377 -4.3790 21 7 6.2498 -0.8412 -5.0653 22 14 8.9749 -0.3991 -5.2159 23 1 10.0811 -0.4689 -4.2276 24 1 9.2366 -1.3576 -6.3194 25 1 8.8882 0.9775 -5.7661 26 6 5.9181 -1.5893 -1.0793 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.7210 -1.5953 -1.2327 31 1 1.5990 -0.2667 2.1366 32 1 1.7585 -1.7732 1.2019 33 1 5.1595 0.6641 1.1679 34 1 3.5807 1.4517 0.9321 35 1 4.4764 2.0838 3.1229 36 1 3.0604 1.0300 3.3518 37 1 4.9154 0.3292 4.6832 38 1 3.0807 -3.3993 -0.8901 39 1 3.5531 -3.7024 -3.2852 40 1 5.5411 -2.6703 -4.2936 41 1 6.2607 -0.6156 -6.0086 42 1 6.5767 -0.9990 -0.4595 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589236992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:08 Heat of formation + Delta-G solvation = -153.767611 kcal Electronic energy + Delta-G solvation = -27675.631314 eV Core-core repulsion = 23747.595352 eV Total energy + Delta-G solvation = -3928.035962 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -38.32367 -37.51389 -37.01409 -36.36036 -35.09317 -34.75385 -33.71899 -31.15812 -29.95887 -29.64994 -29.03702 -25.72160 -25.38326 -22.76212 -21.79514 -21.01315 -20.84537 -18.66366 -17.94001 -17.41013 -17.05165 -16.50684 -15.91955 -15.48898 -15.33666 -14.97883 -14.86997 -14.50757 -14.16558 -14.02183 -13.49910 -13.32286 -13.21977 -12.52643 -12.49171 -12.38066 -12.16880 -11.83737 -11.78370 -11.70396 -11.48037 -11.29051 -11.20847 -11.12754 -11.04840 -10.84416 -10.80016 -10.72887 -10.50884 -10.12903 -9.94355 -9.62869 -9.43472 -9.29934 -8.63719 -7.87127 -7.54332 -6.78833 -4.44076 1.13879 2.35169 2.72784 3.05880 3.11634 3.12590 3.51569 3.91010 4.32465 4.45122 4.51518 4.59338 4.73842 4.98787 5.05472 5.10863 5.19266 5.25293 5.27277 5.41089 5.50266 5.55073 5.67331 5.69629 5.84133 5.98431 6.07378 6.12649 6.22315 6.32514 6.73800 6.77425 6.88672 7.05125 7.16471 7.35069 7.50067 7.74645 7.83406 7.92175 7.93214 8.06544 8.52254 8.78918 8.83806 10.15995 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013681 B = 0.004583 C = 0.004176 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2046.201338 B = 6108.495195 C = 6703.753844 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.081 3.919 3 H 0.099 0.901 4 O -0.540 6.540 5 C 0.087 3.913 6 N -0.985 5.985 7 C 0.125 3.875 8 C 0.057 3.943 9 O -0.553 6.553 10 S 2.687 3.313 11 O -0.950 6.950 12 O -0.983 6.983 13 C -0.626 4.626 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.113 4.113 17 C 0.093 3.907 18 C -0.462 4.462 19 H 0.080 0.920 20 C 0.073 3.927 21 N -0.801 5.801 22 Si 0.911 3.089 23 H -0.260 1.260 24 H -0.272 1.272 25 H -0.274 1.274 26 C -0.119 4.119 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.371 0.629 31 H 0.075 0.925 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.089 0.911 35 H 0.052 0.948 36 H 0.044 0.956 37 H 0.371 0.629 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.124 0.876 41 H 0.280 0.720 42 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.629 4.938 9.613 14.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.019 3.981 3 H 0.117 0.883 4 O -0.345 6.345 5 C -0.039 4.039 6 N -0.820 5.820 7 C -0.001 4.001 8 C -0.023 4.023 9 O -0.356 6.356 10 S 2.784 3.216 11 O -0.941 6.941 12 O -0.974 6.974 13 C -0.717 4.717 14 C -0.157 4.157 15 C -0.140 4.140 16 C -0.133 4.133 17 C 0.089 3.911 18 C -0.492 4.492 19 H 0.099 0.901 20 C -0.143 4.143 21 N -0.427 5.427 22 Si 0.735 3.265 23 H -0.183 1.183 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.218 0.782 31 H 0.093 0.907 32 H 0.113 0.887 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.216 0.784 38 H 0.117 0.883 39 H 0.113 0.887 40 H 0.142 0.858 41 H 0.091 0.909 42 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -9.078 4.812 9.398 13.925 hybrid contribution 0.081 0.316 -0.627 0.707 sum -8.998 5.128 8.771 13.572 Atomic orbital electron populations 1.22476 0.96463 1.02666 1.02622 1.22315 0.92424 0.97603 0.85729 0.88304 1.86816 1.76705 1.28721 1.42226 1.22076 0.80445 1.02817 0.98600 1.57417 1.14701 1.22002 1.87854 1.21271 0.99808 0.85145 0.93836 1.22641 0.93996 0.92300 0.93390 1.86786 1.71354 1.54962 1.22530 1.01879 0.72817 0.71978 0.74951 1.93560 1.42500 1.83589 1.74422 1.93466 1.69777 1.50899 1.83228 1.29822 1.06286 1.12722 1.22918 1.19900 0.99084 1.02689 0.93996 1.20758 0.98169 1.00792 0.94265 1.21628 0.95055 0.96114 1.00486 1.17667 0.92791 0.90008 0.90612 1.19622 1.00444 1.35389 0.93771 0.90142 1.25893 0.97655 0.93262 0.97516 1.69780 1.27224 1.36107 1.09552 0.86213 0.82153 0.78577 0.79524 1.18346 1.19755 1.19975 1.20746 0.95611 1.01172 0.96523 0.92159 0.91824 0.91571 0.78169 0.90670 0.88687 0.88663 0.89279 0.92966 0.93806 0.78359 0.88279 0.88679 0.85790 0.90892 0.87425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.53 37.16 0.35 -1.32 16 2 C 0.08 0.96 3.64 -26.73 -0.10 0.86 16 3 H 0.10 1.14 6.72 -51.93 -0.35 0.79 16 4 O -0.54 -8.45 12.50 -35.23 -0.44 -8.90 16 5 C 0.09 1.08 5.45 -4.04 -0.02 1.06 16 6 N -0.99 -15.20 2.79 -114.37 -0.32 -15.52 16 7 C 0.13 1.71 5.72 -4.04 -0.02 1.68 16 8 C 0.06 0.63 7.36 37.15 0.27 0.90 16 9 O -0.55 -7.60 12.28 -49.63 -0.61 -8.21 16 10 S 2.69 53.61 5.64 -107.50 -0.61 53.00 16 11 O -0.95 -21.28 14.84 -63.81 -0.95 -22.22 16 12 O -0.98 -20.73 15.78 -57.17 -0.90 -21.63 16 13 C -0.63 -14.02 5.97 -39.66 -0.24 -14.25 16 14 C -0.14 -2.92 7.76 -39.29 -0.30 -3.22 16 15 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 16 C -0.11 -2.87 8.68 -38.87 -0.34 -3.21 16 17 C 0.09 2.45 5.56 -106.83 -0.59 1.86 16 18 C -0.46 -12.19 9.07 -37.74 -0.34 -12.53 16 19 H 0.08 2.06 7.88 -52.49 -0.41 1.64 16 20 C 0.07 1.82 5.22 -17.34 -0.09 1.73 16 21 N -0.80 -20.37 10.85 55.55 0.60 -19.77 16 22 Si 0.91 18.61 29.58 -169.99 -5.03 13.58 16 23 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 24 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 26 C -0.12 -2.95 9.26 -38.87 -0.36 -3.31 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.37 5.15 7.86 45.56 0.36 5.50 16 31 H 0.08 0.73 7.77 -51.93 -0.40 0.33 16 32 H 0.09 1.23 6.84 -51.92 -0.36 0.88 16 33 H 0.10 1.50 7.47 -51.92 -0.39 1.11 16 34 H 0.09 0.99 6.66 -51.93 -0.35 0.64 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.04 0.40 7.77 -51.93 -0.40 0.00 16 37 H 0.37 3.17 9.12 45.56 0.42 3.58 16 38 H 0.10 1.88 7.40 -52.49 -0.39 1.49 16 39 H 0.10 1.87 8.06 -52.48 -0.42 1.44 16 40 H 0.12 3.23 6.17 -52.49 -0.32 2.90 16 41 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 42 H 0.11 2.59 7.60 -52.49 -0.40 2.19 16 LS Contribution 356.99 15.07 5.38 5.38 Total: -1.00 -33.90 356.99 -9.29 -43.20 By element: Atomic # 1 Polarization: 18.20 SS G_CDS: -4.24 Total: 13.95 kcal Atomic # 6 Polarization: -30.69 SS G_CDS: -2.18 Total: -32.87 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.28 Total: -35.29 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -2.90 Total: -60.96 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: 53.61 SS G_CDS: -0.61 Total: 53.00 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.90 -9.29 -43.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589236992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.572 kcal (2) G-P(sol) polarization free energy of solvation -33.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.97 seconds