Wall clock time and date at job start Tue Mar 31 2020 05:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99994 * 2 1 4 4 H 1.09005 * 109.46766 * 30.00548 * 3 2 1 5 5 C 1.53002 * 109.47472 * 270.00423 * 3 2 1 6 6 C 1.50700 * 109.47243 * 149.99860 * 3 2 1 7 7 N 1.28876 * 121.19284 * 64.98352 * 6 3 2 8 8 C 1.33635 * 117.02803 * 180.02562 * 7 6 3 9 9 N 1.33873 * 127.41761 * 179.97438 * 8 7 6 10 10 C 1.33331 * 120.00194 * 180.02562 * 9 8 7 11 11 O 1.21923 * 120.00332 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99918 * 179.72564 * 10 9 8 13 13 C 1.46499 * 120.00195 * 180.27555 * 12 10 9 14 14 C 1.50701 * 109.47260 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00371 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99569 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99803 * 180.02562 * 16 14 13 18 18 H 1.08010 * 119.99499 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00455 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99638 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00524 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46805 * 59.99676 * 21 19 17 23 23 H 1.48496 * 109.47335 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47186 * 300.00089 * 21 19 17 25 25 S 1.72303 * 105.16961 * 0.23479 * 8 7 6 26 26 N 1.33555 * 121.20128 * 244.99871 * 6 3 2 27 27 H 0.97000 * 127.18554 * 0.02562 * 26 6 3 28 28 H 1.09005 * 109.46577 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46758 * 299.99437 * 1 2 3 30 30 H 1.08996 * 109.47339 * 59.99823 * 1 2 3 31 31 H 1.08995 * 109.47133 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47034 * 299.99574 * 5 3 2 33 33 H 1.09007 * 109.46912 * 59.99524 * 5 3 2 34 34 H 0.97000 * 120.00327 * 0.26833 * 12 10 9 35 35 H 1.09007 * 109.47112 * 299.99367 * 13 12 10 36 36 H 1.09003 * 109.47672 * 59.99309 * 13 12 10 37 37 H 0.96996 * 120.00685 * 359.97438 * 16 14 13 38 38 H 0.97003 * 120.00172 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 4.3275 0.5861 0.2376 8 6 5.4669 0.6070 0.9356 9 7 6.6138 -0.0170 0.6395 10 6 7.6676 0.1064 1.4469 11 8 7.5870 0.7877 2.4547 12 7 8.8204 -0.5263 1.1517 13 6 9.9765 -0.3957 2.0420 14 6 11.1287 -1.1947 1.4896 15 8 10.9971 -1.8128 0.4544 16 7 12.3052 -1.2232 2.1466 17 6 13.3536 -1.9497 1.6439 18 1 13.2366 -2.4994 0.7216 19 6 14.5667 -1.9787 2.3208 20 7 14.7092 -1.3094 3.4427 21 14 15.9950 -2.9690 1.6362 22 1 16.3490 -2.4593 0.2871 23 1 17.1669 -2.8361 2.5384 24 1 15.6044 -4.3983 1.5385 25 16 5.1402 1.6038 2.3025 26 7 3.5334 1.9280 1.8527 27 1 2.8906 2.4768 2.3287 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.6605 2.7674 -1.4424 32 1 2.8829 1.0777 -1.9563 33 1 1.2567 1.8015 -1.9563 34 1 8.8847 -1.0682 0.3497 35 1 10.2630 0.6535 2.1140 36 1 9.7167 -0.7701 3.0322 37 1 12.4104 -0.7292 2.9747 38 1 15.5561 -1.3293 3.9152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589250737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:59 Heat of formation + Delta-G solvation = -27.868495 kcal Electronic energy + Delta-G solvation = -24355.378680 eV Core-core repulsion = 20361.554521 eV Total energy + Delta-G solvation = -3993.824159 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15547 -39.85261 -38.51012 -38.16327 -35.09170 -34.27468 -33.57617 -32.56614 -32.09742 -31.30478 -27.85596 -27.44452 -25.86628 -24.54751 -23.25873 -21.44094 -20.73527 -19.59239 -19.26918 -18.19160 -17.89089 -17.59531 -17.16064 -16.22368 -16.17144 -15.93485 -15.68152 -15.13220 -15.05830 -14.66271 -14.16329 -13.95644 -13.84162 -13.45001 -13.41862 -13.00846 -12.43039 -12.19525 -12.15976 -12.12103 -11.72006 -11.68728 -11.57495 -11.27416 -11.05109 -10.47603 -10.45246 -10.26962 -10.20696 -10.05317 -9.56379 -9.16580 -8.90859 -8.55646 -8.04857 -7.99525 -6.45286 -3.86979 0.01184 0.22167 1.18571 1.96944 2.69127 3.11491 3.19205 3.25999 3.30431 3.56144 3.70355 3.75591 3.85052 3.96542 4.16944 4.35484 4.47924 4.69001 4.76562 4.94817 5.06220 5.13959 5.18486 5.23082 5.54887 5.73548 5.94393 6.02672 6.09147 6.15240 6.37249 6.64150 6.82178 7.40434 7.52160 7.96008 7.98775 8.52141 8.79625 9.11040 9.45701 9.94292 10.71680 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.001932 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.563340 B =14492.867355 C =14978.575272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.155 3.845 4 H 0.087 0.913 5 C -0.170 4.170 6 C 0.397 3.603 7 N -0.505 5.505 8 C 0.392 3.608 9 N -0.557 5.557 10 C 0.666 3.334 11 O -0.604 6.604 12 N -0.680 5.680 13 C 0.121 3.879 14 C 0.430 3.570 15 O -0.592 6.592 16 N -0.550 5.550 17 C -0.304 4.304 18 H 0.105 0.895 19 C 0.025 3.975 20 N -0.896 5.896 21 Si 0.934 3.066 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.273 1.273 25 S 0.291 5.709 26 N -0.707 5.707 27 H 0.446 0.554 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.049 0.951 31 H 0.071 0.929 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.419 0.581 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.396 0.604 38 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.178 11.009 -2.130 33.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.281 6.281 3 C 0.093 3.907 4 H 0.105 0.895 5 C -0.228 4.228 6 C 0.110 3.890 7 N -0.237 5.237 8 C 0.009 3.991 9 N -0.310 5.310 10 C 0.362 3.638 11 O -0.487 6.487 12 N -0.334 5.334 13 C -0.007 4.007 14 C 0.215 3.785 15 O -0.478 6.478 16 N -0.185 5.185 17 C -0.433 4.433 18 H 0.123 0.877 19 C -0.178 4.178 20 N -0.537 5.537 21 Si 0.761 3.239 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.198 1.198 25 S 0.425 5.575 26 N -0.434 5.434 27 H 0.290 0.710 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.258 0.742 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.230 0.770 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -29.878 10.390 -2.096 31.702 hybrid contribution -0.106 0.323 0.329 0.473 sum -29.983 10.713 -1.767 31.889 Atomic orbital electron populations 1.22949 0.79783 1.03850 1.00312 1.88126 1.20326 1.24718 1.94945 1.20739 0.86544 0.87055 0.96398 0.89480 1.22270 1.03926 1.02721 0.93927 1.23133 0.96518 0.85627 0.83726 1.67549 0.98443 1.25887 1.31862 1.25583 0.93234 0.90654 0.89584 1.68248 0.98105 1.30854 1.33775 1.16720 0.83707 0.80623 0.82711 1.90745 1.83110 1.44846 1.30016 1.44463 1.09302 1.50984 1.28636 1.20924 0.85142 1.01135 0.93507 1.19714 0.84503 0.87036 0.87249 1.90518 1.82894 1.48948 1.25455 1.41764 1.09571 1.43783 1.23412 1.19696 0.89306 1.25805 1.08507 0.87702 1.25315 0.99052 0.97673 0.95726 1.69612 1.26931 1.41345 1.15780 0.85862 0.79559 0.79895 0.78583 1.19799 1.20911 1.19791 1.86922 0.89408 1.52562 1.28619 1.48605 1.20820 1.49297 1.24684 0.71015 0.88674 0.93685 0.93254 0.90998 0.89284 0.90794 0.74179 0.89706 0.89715 0.77042 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.82 101.05 1.09 1.19 16 2 O -0.36 -2.68 10.33 -35.23 -0.36 -3.04 16 3 C 0.16 0.85 3.20 -27.88 -0.09 0.76 16 4 H 0.09 0.13 7.78 -51.93 -0.40 -0.28 16 5 C -0.17 -0.86 9.40 37.16 0.35 -0.51 16 6 C 0.40 3.48 6.62 -158.09 -1.05 2.43 16 7 N -0.50 -6.72 10.26 -12.99 -0.13 -6.85 16 8 C 0.39 6.14 8.37 -88.74 -0.74 5.39 16 9 N -0.56 -10.43 10.61 -17.83 -0.19 -10.62 16 10 C 0.67 13.19 8.46 -88.20 -0.75 12.45 16 11 O -0.60 -12.13 13.90 4.99 0.07 -12.06 16 12 N -0.68 -13.73 5.53 -66.73 -0.37 -14.10 16 13 C 0.12 2.45 6.15 -5.19 -0.03 2.41 16 14 C 0.43 10.47 7.85 -10.98 -0.09 10.39 16 15 O -0.59 -16.21 15.24 5.55 0.08 -16.12 16 16 N -0.55 -14.18 5.29 -10.96 -0.06 -14.23 16 17 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 18 H 0.11 3.06 7.16 -52.48 -0.38 2.68 16 19 C 0.02 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 21 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 22 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.25 7.11 56.52 0.40 -5.84 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 25 S 0.29 3.46 20.96 -107.50 -2.25 1.21 16 26 N -0.71 -4.72 6.78 31.29 0.21 -4.50 16 27 H 0.45 0.97 8.96 -40.82 -0.37 0.61 16 28 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.04 0.08 8.08 -51.93 -0.42 -0.34 16 30 H 0.05 0.10 7.87 -51.93 -0.41 -0.31 16 31 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.09 0.69 8.01 -51.93 -0.42 0.27 16 33 H 0.07 0.23 7.87 -51.93 -0.41 -0.18 16 34 H 0.42 8.71 7.54 -40.82 -0.31 8.40 16 35 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 36 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 37 H 0.40 9.74 7.90 -40.82 -0.32 9.42 16 38 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -36.62 350.93 -7.81 -44.43 By element: Atomic # 1 Polarization: 16.07 SS G_CDS: -4.25 Total: 11.82 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: -1.54 Total: 26.42 kcal Atomic # 7 Polarization: -74.22 SS G_CDS: 0.19 Total: -74.03 kcal Atomic # 8 Polarization: -31.02 SS G_CDS: -0.21 Total: -31.23 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.46 SS G_CDS: -2.25 Total: 1.21 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.62 -7.81 -44.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589250737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.563 kcal (2) G-P(sol) polarization free energy of solvation -36.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds