Wall clock time and date at job start Tue Mar 31 2020 05:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 113.99994 * 2 1 4 4 H 1.09005 * 109.46766 * 30.00548 * 3 2 1 5 5 C 1.53002 * 109.47472 * 270.00423 * 3 2 1 6 6 C 1.50700 * 109.47243 * 149.99860 * 3 2 1 7 7 N 1.28876 * 121.19284 * 64.98352 * 6 3 2 8 8 C 1.33635 * 117.02803 * 180.02562 * 7 6 3 9 9 N 1.33873 * 127.41761 * 179.97438 * 8 7 6 10 10 C 1.33331 * 120.00194 * 180.02562 * 9 8 7 11 11 O 1.21923 * 120.00332 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99918 * 179.72564 * 10 9 8 13 13 C 1.46499 * 120.00195 * 180.27555 * 12 10 9 14 14 C 1.50701 * 109.47260 * 179.97438 * 13 12 10 15 15 O 1.21285 * 120.00371 * 359.97438 * 14 13 12 16 16 N 1.34779 * 119.99569 * 180.02562 * 14 13 12 17 17 C 1.37104 * 119.99803 * 180.02562 * 16 14 13 18 18 H 1.08010 * 119.99499 * 359.97438 * 17 16 14 19 19 C 1.38944 * 120.00455 * 179.97438 * 17 16 14 20 20 N 1.31413 * 119.99638 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00524 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46805 * 59.99676 * 21 19 17 23 23 H 1.48496 * 109.47335 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.47186 * 300.00089 * 21 19 17 25 25 S 1.72303 * 105.16961 * 0.23479 * 8 7 6 26 26 N 1.33555 * 121.20128 * 244.99871 * 6 3 2 27 27 H 0.97000 * 127.18554 * 0.02562 * 26 6 3 28 28 H 1.09005 * 109.46577 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46758 * 299.99437 * 1 2 3 30 30 H 1.08996 * 109.47339 * 59.99823 * 1 2 3 31 31 H 1.08995 * 109.47133 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47034 * 299.99574 * 5 3 2 33 33 H 1.09007 * 109.46912 * 59.99524 * 5 3 2 34 34 H 0.97000 * 120.00327 * 0.26833 * 12 10 9 35 35 H 1.09007 * 109.47112 * 299.99367 * 13 12 10 36 36 H 1.09003 * 109.47672 * 59.99309 * 13 12 10 37 37 H 0.96996 * 120.00685 * 359.97438 * 16 14 13 38 38 H 0.97003 * 120.00172 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9993 0.5139 5 6 2.2176 1.7715 -1.4425 6 6 3.3386 1.2639 0.7104 7 7 4.3275 0.5861 0.2376 8 6 5.4669 0.6070 0.9356 9 7 6.6138 -0.0170 0.6395 10 6 7.6676 0.1064 1.4469 11 8 7.5870 0.7877 2.4547 12 7 8.8204 -0.5263 1.1517 13 6 9.9765 -0.3957 2.0420 14 6 11.1287 -1.1947 1.4896 15 8 10.9971 -1.8128 0.4544 16 7 12.3052 -1.2232 2.1466 17 6 13.3536 -1.9497 1.6439 18 1 13.2366 -2.4994 0.7216 19 6 14.5667 -1.9787 2.3208 20 7 14.7092 -1.3094 3.4427 21 14 15.9950 -2.9690 1.6362 22 1 16.3490 -2.4593 0.2871 23 1 17.1669 -2.8361 2.5384 24 1 15.6044 -4.3983 1.5385 25 16 5.1402 1.6038 2.3025 26 7 3.5334 1.9280 1.8527 27 1 2.8906 2.4768 2.3287 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 2.6605 2.7674 -1.4424 32 1 2.8829 1.0777 -1.9563 33 1 1.2567 1.8015 -1.9563 34 1 8.8847 -1.0682 0.3497 35 1 10.2630 0.6535 2.1140 36 1 9.7167 -0.7701 3.0322 37 1 12.4104 -0.7292 2.9747 38 1 15.5561 -1.3293 3.9152 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589250737.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:58 Heat of formation + Delta-G solvation = -59.824345 kcal Electronic energy + Delta-G solvation = -24356.764390 eV Core-core repulsion = 20361.554521 eV Total energy + Delta-G solvation = -3995.209869 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.099 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.00467 -41.26830 -40.09636 -38.97369 -36.45935 -35.95021 -35.22196 -33.59054 -33.35276 -32.62024 -29.46211 -27.80165 -26.91266 -26.15258 -24.20807 -22.32381 -21.86680 -21.40380 -20.42912 -20.04950 -19.02121 -18.72594 -17.76579 -17.62808 -17.18259 -17.11007 -16.68483 -16.56862 -16.34059 -16.00652 -15.96942 -15.50458 -15.20933 -14.32242 -14.02632 -13.87140 -13.75115 -13.54892 -13.39596 -13.09751 -12.93604 -12.84768 -12.63998 -12.47047 -12.34360 -12.12390 -12.03066 -11.57345 -11.47609 -11.07722 -10.76928 -10.58354 -10.38269 -10.34524 -10.09999 -9.15382 -8.50860 -6.01256 -0.98467 -0.67483 0.13974 1.00199 1.38220 1.42255 1.52285 1.60163 1.89143 2.27510 2.41581 2.50293 2.74455 3.01648 3.10823 3.15717 3.44354 3.85388 3.97188 4.16333 4.33373 4.40853 4.49974 4.53201 4.62091 4.73676 4.84967 4.96700 5.18988 5.33293 5.38023 5.52422 5.61852 5.91424 6.07165 6.38278 6.43919 6.50224 7.03101 7.38040 7.45869 7.94207 8.65835 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.036141 B = 0.001932 C = 0.001869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.563340 B =14492.867355 C =14978.575272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.398 6.398 3 C 0.155 3.845 4 H 0.140 0.860 5 C -0.169 4.169 6 C 0.406 3.594 7 N -0.540 5.540 8 C 0.376 3.624 9 N -0.607 5.607 10 C 0.668 3.332 11 O -0.622 6.622 12 N -0.691 5.691 13 C 0.138 3.862 14 C 0.432 3.568 15 O -0.625 6.625 16 N -0.556 5.556 17 C -0.340 4.340 18 H 0.085 0.915 19 C -0.010 4.010 20 N -0.914 5.914 21 Si 0.999 3.001 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.271 1.271 25 S 0.311 5.689 26 N -0.667 5.667 27 H 0.471 0.529 28 H 0.092 0.908 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.082 0.918 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.413 0.587 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.400 0.600 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.650 12.583 -1.392 35.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.317 6.317 3 C 0.093 3.907 4 H 0.157 0.843 5 C -0.228 4.228 6 C 0.120 3.880 7 N -0.274 5.274 8 C -0.004 4.004 9 N -0.365 5.365 10 C 0.364 3.636 11 O -0.506 6.506 12 N -0.345 5.345 13 C 0.010 3.990 14 C 0.218 3.782 15 O -0.513 6.513 16 N -0.192 5.192 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.211 4.211 20 N -0.554 5.554 21 Si 0.822 3.178 22 H -0.196 1.196 23 H -0.193 1.193 24 H -0.196 1.196 25 S 0.447 5.553 26 N -0.397 5.397 27 H 0.321 0.679 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.074 0.926 33 H 0.117 0.883 34 H 0.251 0.749 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.235 0.765 38 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -32.486 12.060 -1.284 34.676 hybrid contribution 0.305 -0.022 0.134 0.334 sum -32.181 12.038 -1.151 34.378 Atomic orbital electron populations 1.23161 0.77761 1.04397 1.02184 1.88087 1.22598 1.25852 1.95125 1.21116 0.85242 0.87684 0.96656 0.84255 1.22278 1.04588 1.02253 0.93653 1.23844 0.96889 0.83773 0.83492 1.67553 0.98693 1.28003 1.33182 1.25812 0.93234 0.90555 0.90795 1.68218 0.99024 1.34172 1.35037 1.16761 0.83828 0.80275 0.82767 1.90708 1.83722 1.45613 1.30592 1.44431 1.09679 1.51808 1.28543 1.20743 0.83669 1.00965 0.93671 1.20369 0.84980 0.86332 0.86474 1.90490 1.83585 1.50263 1.26930 1.41787 1.09745 1.43936 1.23696 1.19714 0.90902 1.27476 1.08798 0.89736 1.26140 1.00906 0.98214 0.95796 1.69675 1.27849 1.41624 1.16281 0.84907 0.76538 0.78264 0.78126 1.19554 1.19343 1.19570 1.86757 0.91659 1.50391 1.26488 1.48507 1.19312 1.48174 1.23704 0.67887 0.88994 0.91478 0.91618 0.89964 0.92649 0.88344 0.74911 0.88297 0.88386 0.76549 0.90990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 10.82 113.37 1.23 1.30 16 2 O -0.40 -4.91 10.33 -148.98 -1.54 -6.45 16 3 C 0.16 1.17 3.20 29.85 0.10 1.26 16 4 H 0.14 -0.40 7.78 -2.38 -0.02 -0.42 16 5 C -0.17 -1.30 9.40 71.98 0.68 -0.62 16 6 C 0.41 6.16 6.62 139.06 0.92 7.08 16 7 N -0.54 -14.19 10.26 -195.02 -2.00 -16.19 16 8 C 0.38 11.89 8.37 179.69 1.50 13.40 16 9 N -0.61 -23.67 10.61 -329.24 -3.49 -27.17 16 10 C 0.67 27.28 8.46 179.50 1.52 28.80 16 11 O -0.62 -25.26 13.90 -5.07 -0.07 -25.33 16 12 N -0.69 -28.98 5.53 -483.14 -2.67 -31.65 16 13 C 0.14 5.67 6.15 85.63 0.53 6.19 16 14 C 0.43 21.70 7.85 87.66 0.69 22.39 16 15 O -0.62 -35.56 15.24 -3.05 -0.05 -35.60 16 16 N -0.56 -29.41 5.29 -306.98 -1.62 -31.03 16 17 C -0.34 -19.53 9.68 84.04 0.81 -18.71 16 18 H 0.08 5.12 7.16 -2.91 -0.02 5.10 16 19 C -0.01 -0.53 5.50 84.92 0.47 -0.06 16 20 N -0.91 -49.69 13.05 21.66 0.28 -49.41 16 21 Si 1.00 43.15 29.55 68.60 2.03 45.18 16 22 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 23 H -0.27 -10.90 7.11 99.48 0.71 -10.20 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 S 0.31 6.95 20.96 -56.49 -1.18 5.76 16 26 N -0.67 -6.69 6.78 -54.91 -0.37 -7.06 16 27 H 0.47 -0.20 8.96 -92.71 -0.83 -1.03 16 28 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 29 H 0.07 -0.06 8.08 -2.39 -0.02 -0.08 16 30 H 0.07 0.02 7.87 -2.39 -0.02 0.00 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.83 8.01 -2.39 -0.02 0.81 16 33 H 0.10 0.28 7.87 -2.38 -0.02 0.26 16 34 H 0.41 18.15 7.54 -92.71 -0.70 17.45 16 35 H 0.10 3.78 8.14 -2.38 -0.02 3.76 16 36 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 37 H 0.40 20.09 7.90 -92.71 -0.73 19.36 16 38 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -83.21 350.93 -3.36 -86.57 By element: Atomic # 1 Polarization: 32.45 SS G_CDS: -1.10 Total: 31.34 kcal Atomic # 6 Polarization: 52.60 SS G_CDS: 8.44 Total: 61.03 kcal Atomic # 7 Polarization: -152.63 SS G_CDS: -9.88 Total: -162.51 kcal Atomic # 8 Polarization: -65.72 SS G_CDS: -1.66 Total: -67.38 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 6.95 SS G_CDS: -1.18 Total: 5.76 kcal Total: -83.21 -3.36 -86.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589250737.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.744 kcal (2) G-P(sol) polarization free energy of solvation -83.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds