Wall clock time and date at job start Tue Mar 31 2020 06:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30835 * 125.89771 * 2 1 4 4 N 1.40084 * 108.20255 * 179.97438 * 3 2 1 5 5 C 1.46506 * 126.03387 * 179.97438 * 4 3 2 6 6 C 1.34948 * 107.92882 * 0.26245 * 4 3 2 7 7 C 1.50693 * 126.12973 * 179.73650 * 6 4 3 8 8 C 1.35323 * 107.74101 * 359.57569 * 6 4 3 9 9 S 1.76198 * 126.03476 * 180.16419 * 8 6 4 10 10 O 1.42089 * 106.40664 * 23.82176 * 9 8 6 11 11 O 1.42107 * 106.40021 * 156.74637 * 9 8 6 12 12 N 1.65603 * 107.21545 * 270.28039 * 9 8 6 13 13 C 1.47425 * 125.64529 * 90.03149 * 12 9 8 14 14 C 1.54915 * 104.83093 * 204.08770 * 13 12 9 15 15 C 1.55156 * 101.58281 * 322.98996 * 14 13 12 16 16 O 1.42896 * 110.71893 * 276.96050 * 15 14 13 17 17 C 1.50696 * 110.72073 * 153.85953 * 15 14 13 18 18 H 1.08003 * 120.00580 * 241.45435 * 17 15 14 19 19 C 1.37883 * 119.99596 * 61.45642 * 17 15 14 20 20 N 1.31507 * 119.99926 * 359.97438 * 19 17 15 21 21 Si 1.86799 * 119.99891 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47327 * 89.99857 * 21 19 17 23 23 H 1.48494 * 109.47315 * 210.00042 * 21 19 17 24 24 H 1.48502 * 109.47256 * 329.99897 * 21 19 17 25 25 C 1.47021 * 125.65029 * 269.71897 * 12 9 8 26 26 H 1.09001 * 109.46786 * 90.02770 * 1 2 3 27 27 H 1.09002 * 109.47464 * 210.02784 * 1 2 3 28 28 H 1.09002 * 109.47284 * 330.02962 * 1 2 3 29 29 H 1.09001 * 109.47060 * 90.02984 * 5 4 3 30 30 H 1.09004 * 109.47073 * 210.02473 * 5 4 3 31 31 H 1.09000 * 109.47212 * 330.02555 * 5 4 3 32 32 H 1.08998 * 109.47274 * 90.01856 * 7 6 4 33 33 H 1.08998 * 109.47666 * 210.02433 * 7 6 4 34 34 H 1.09001 * 109.47041 * 330.02515 * 7 6 4 35 35 H 1.08994 * 110.36868 * 322.92366 * 13 12 9 36 36 H 1.09000 * 110.36847 * 85.25172 * 13 12 9 37 37 H 1.09004 * 110.99973 * 81.06093 * 14 13 12 38 38 H 1.08994 * 111.00860 * 204.87272 * 14 13 12 39 39 H 0.96691 * 114.00161 * 298.54314 * 16 15 14 40 40 H 0.97009 * 119.99835 * 179.97438 * 20 19 17 41 41 H 1.09007 * 109.88184 * 298.39600 * 25 12 9 42 42 H 1.09003 * 109.88066 * 59.55938 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 0.0006 5 6 4.7899 1.5008 0.0003 6 6 3.6143 -0.7154 -0.0049 7 6 4.8350 -1.5989 -0.0120 8 6 2.3271 -1.1330 0.0006 9 16 1.7809 -2.8082 0.0010 10 8 2.8446 -3.5771 0.5454 11 8 0.4683 -2.8021 0.5455 12 7 1.6288 -3.2745 -1.5807 13 6 2.6887 -3.8883 -2.4012 14 6 2.2956 -3.5640 -3.8641 15 6 0.7499 -3.6849 -3.8056 16 8 0.3441 -5.0485 -3.9384 17 6 0.1078 -2.8333 -4.8702 18 1 -0.5560 -2.0285 -4.5906 19 6 0.3676 -3.0817 -6.2013 20 7 1.1762 -4.0613 -6.5418 21 14 -0.4289 -2.0266 -7.5211 22 1 0.4473 -0.8663 -7.8229 23 1 -0.6213 -2.8349 -8.7518 24 1 -1.7460 -1.5398 -7.0378 25 6 0.4125 -3.1507 -2.3974 26 1 -0.3633 -0.0005 -1.0277 27 1 -0.3634 -0.8897 0.5143 28 1 -0.3634 0.8903 0.5134 29 1 5.0829 1.7160 1.0279 30 1 5.6094 0.9980 -0.5134 31 1 4.5563 2.4331 -0.5139 32 1 5.1321 -1.8164 1.0139 33 1 4.6063 -2.5306 -0.5294 34 1 5.6498 -1.0887 -0.5257 35 1 3.6566 -3.4480 -2.1620 36 1 2.7126 -4.9668 -2.2451 37 1 2.5984 -2.5524 -4.1349 38 1 2.7194 -4.2940 -4.5537 39 1 0.6007 -5.4553 -4.7772 40 1 1.3587 -4.2363 -7.4783 41 1 -0.3911 -3.7414 -1.9575 42 1 0.1139 -2.1043 -2.4615 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592073296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:40 Heat of formation + Delta-G solvation = -46.343454 kcal Electronic energy + Delta-G solvation = -27860.146404 eV Core-core repulsion = 23969.061453 eV Total energy + Delta-G solvation = -3891.084950 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.43262 -38.02336 -36.92154 -35.45800 -34.30536 -34.25637 -32.32414 -32.18829 -29.60647 -29.08869 -28.27456 -27.36950 -25.65119 -24.80179 -21.64384 -21.18603 -19.83097 -19.68600 -18.46962 -17.53281 -17.20740 -16.67987 -15.95518 -15.73434 -15.30185 -14.94057 -14.43757 -14.14964 -14.03780 -13.65856 -13.60187 -13.35755 -13.23503 -12.89100 -12.81738 -12.66122 -12.16230 -12.12329 -12.05449 -11.98540 -11.73776 -11.62466 -11.38670 -11.34505 -11.28258 -11.03762 -10.83435 -10.49269 -10.45313 -10.33883 -10.09108 -9.32546 -9.20918 -9.11782 -8.65862 -8.34995 -8.15720 -6.27105 -4.34379 0.82359 1.52310 2.27338 2.32398 3.19302 3.27320 3.31382 3.55655 4.16216 4.23638 4.27415 4.28114 4.60193 4.78744 4.84499 4.91080 5.01033 5.10919 5.28061 5.31070 5.42011 5.59292 5.65547 5.78564 5.87736 5.92697 6.02808 6.06964 6.13532 6.25031 6.49415 6.55772 6.67266 6.75919 6.84664 6.98471 7.07478 7.36589 7.40939 7.48814 7.75031 8.06039 8.67719 9.33313 9.43666 10.80286 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014011 B = 0.004681 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.019917 B = 5979.613389 C = 6514.326870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.169 3.831 3 N -0.301 5.301 4 N -0.366 5.366 5 C 0.094 3.906 6 C 0.208 3.792 7 C -0.115 4.115 8 C -0.816 4.816 9 S 2.738 3.262 10 O -0.969 6.969 11 O -0.960 6.960 12 N -1.006 6.006 13 C 0.121 3.879 14 C -0.132 4.132 15 C 0.251 3.749 16 O -0.584 6.584 17 C -0.534 4.534 18 H 0.064 0.936 19 C 0.073 3.927 20 N -0.895 5.895 21 Si 0.900 3.100 22 H -0.281 1.281 23 H -0.285 1.285 24 H -0.272 1.272 25 C 0.137 3.863 26 H 0.089 0.911 27 H 0.112 0.888 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.086 0.914 39 H 0.381 0.619 40 H 0.267 0.733 41 H 0.066 0.934 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.574 6.915 10.244 15.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.000 4.000 3 N -0.121 5.121 4 N -0.144 5.144 5 C -0.048 4.048 6 C 0.074 3.926 7 C -0.173 4.173 8 C -0.914 4.914 9 S 2.827 3.173 10 O -0.959 6.959 11 O -0.951 6.951 12 N -0.846 5.846 13 C -0.004 4.004 14 C -0.171 4.171 15 C 0.210 3.790 16 O -0.393 6.393 17 C -0.572 4.572 18 H 0.082 0.918 19 C -0.130 4.130 20 N -0.535 5.535 21 Si 0.728 3.272 22 H -0.207 1.207 23 H -0.210 1.210 24 H -0.197 1.197 25 C 0.013 3.987 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.104 0.896 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 8.439 7.911 11.522 16.327 hybrid contribution 0.303 0.590 -1.771 1.891 sum 8.743 8.501 9.751 15.614 Atomic orbital electron populations 1.20799 0.85489 1.05709 1.04729 1.21887 0.96832 0.88320 0.92945 1.77361 0.85677 1.22177 1.26924 1.48859 1.06241 1.04202 1.55102 1.21973 0.83871 0.95219 1.03690 1.20914 0.95727 0.84760 0.91229 1.20924 0.92381 0.98822 1.05199 1.31472 0.99730 1.25238 1.34949 1.00352 0.73093 0.72421 0.71428 1.93508 1.57323 1.68482 1.76581 1.93476 1.38079 1.86997 1.76535 1.58475 1.21280 1.74905 1.29932 1.22129 0.88133 0.97154 0.92949 1.23289 1.00072 1.01830 0.91953 1.19445 0.89345 0.81033 0.89215 1.86133 1.82586 1.27269 1.43306 1.21550 1.28777 1.16069 0.90851 0.91796 1.24972 0.94255 0.95081 0.98681 1.69701 1.35648 1.30015 1.18109 0.86463 0.79908 0.80056 0.80808 1.20674 1.21040 1.19654 1.21828 0.84830 1.00192 0.91871 0.89217 0.86932 0.90324 0.90302 0.89081 0.88823 0.88261 0.87862 0.90167 0.92822 0.91717 0.91794 0.89596 0.76875 0.92283 0.91550 0.91508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.57 10.15 36.01 0.37 -1.21 16 2 C 0.17 2.80 7.21 -82.41 -0.59 2.21 16 3 N -0.30 -4.87 12.58 33.67 0.42 -4.45 16 4 N -0.37 -4.96 4.01 -63.88 -0.26 -5.21 16 5 C 0.09 0.75 11.28 59.85 0.67 1.42 16 6 C 0.21 2.94 6.92 -82.26 -0.57 2.37 16 7 C -0.12 -1.23 9.15 36.00 0.33 -0.90 16 8 C -0.82 -13.42 6.17 -40.01 -0.25 -13.66 16 9 S 2.74 48.48 5.89 -107.50 -0.63 47.85 16 10 O -0.97 -17.56 15.39 -57.17 -0.88 -18.44 16 11 O -0.96 -18.50 14.95 -57.17 -0.85 -19.35 16 12 N -1.01 -19.05 3.70 -111.41 -0.41 -19.47 16 13 C 0.12 2.22 6.98 -2.53 -0.02 2.21 16 14 C -0.13 -2.80 5.47 -24.58 -0.13 -2.94 16 15 C 0.25 5.90 0.85 -89.93 -0.08 5.82 16 16 O -0.58 -14.39 13.07 -35.23 -0.46 -14.85 16 17 C -0.53 -13.60 8.22 -34.44 -0.28 -13.88 16 18 H 0.06 1.62 7.58 -52.48 -0.40 1.22 16 19 C 0.07 1.83 5.28 -17.82 -0.09 1.74 16 20 N -0.90 -22.64 10.67 55.43 0.59 -22.04 16 21 Si 0.90 19.99 29.54 -169.99 -5.02 14.96 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 C 0.14 2.90 6.35 -3.06 -0.02 2.88 16 26 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 27 H 0.11 1.70 5.66 -51.93 -0.29 1.40 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.50 7.04 -51.93 -0.37 0.13 16 31 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.10 1.22 5.67 -51.93 -0.29 0.92 16 34 H 0.08 0.60 7.07 -51.93 -0.37 0.23 16 35 H 0.05 0.83 7.01 -51.93 -0.36 0.46 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 38 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 39 H 0.38 9.39 7.46 45.56 0.34 9.73 16 40 H 0.27 6.50 8.31 -40.82 -0.34 6.17 16 41 H 0.07 1.42 8.07 -51.93 -0.42 1.00 16 42 H 0.07 1.34 7.66 -51.93 -0.40 0.95 16 LS Contribution 351.07 15.07 5.29 5.29 Total: -1.00 -31.46 351.07 -7.92 -39.37 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: -5.04 Total: 10.27 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -0.67 Total: -13.94 kcal Atomic # 7 Polarization: -51.52 SS G_CDS: 0.35 Total: -51.17 kcal Atomic # 8 Polarization: -50.44 SS G_CDS: -2.19 Total: -52.64 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.96 kcal Atomic # 16 Polarization: 48.48 SS G_CDS: -0.63 Total: 47.85 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -31.46 -7.92 -39.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592073296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.971 kcal (2) G-P(sol) polarization free energy of solvation -31.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds