Wall clock time and date at job start Tue Mar 31 2020 06:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30833 * 125.89951 * 2 1 4 4 N 1.40083 * 108.20735 * 180.02562 * 3 2 1 5 5 C 1.46493 * 126.04092 * 179.97438 * 4 3 2 6 6 C 1.34951 * 107.92136 * 359.75789 * 4 3 2 7 7 C 1.50703 * 126.12611 * 180.24006 * 6 4 3 8 8 C 1.35312 * 107.74751 * 0.38814 * 6 4 3 9 9 S 1.76201 * 126.04207 * 179.87373 * 8 6 4 10 10 O 1.42097 * 106.40581 * 156.17606 * 9 8 6 11 11 O 1.42103 * 106.40044 * 23.25339 * 9 8 6 12 12 N 1.65604 * 107.21889 * 269.71578 * 9 8 6 13 13 C 1.47423 * 125.64846 * 89.97047 * 12 9 8 14 14 C 1.54909 * 104.83351 * 155.90823 * 13 12 9 15 15 C 1.55158 * 101.61642 * 36.99324 * 14 13 12 16 16 O 1.42898 * 110.71953 * 82.87702 * 15 14 13 17 17 C 1.50695 * 110.72412 * 206.15548 * 15 14 13 18 18 H 1.08003 * 120.00393 * 118.54262 * 17 15 14 19 19 C 1.37880 * 119.99858 * 298.54782 * 17 15 14 20 20 N 1.31509 * 119.99863 * 359.97438 * 19 17 15 21 21 Si 1.86797 * 119.99990 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47222 * 59.99729 * 21 19 17 23 23 H 1.48504 * 109.46982 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47088 * 299.99590 * 21 19 17 25 25 C 1.47016 * 125.64713 * 270.01919 * 12 9 8 26 26 H 1.08999 * 109.47440 * 269.98024 * 1 2 3 27 27 H 1.09005 * 109.46884 * 29.98224 * 1 2 3 28 28 H 1.09001 * 109.47183 * 149.97186 * 1 2 3 29 29 H 1.09007 * 109.47306 * 89.97683 * 5 4 3 30 30 H 1.09003 * 109.47698 * 209.97810 * 5 4 3 31 31 H 1.09000 * 109.47156 * 329.98079 * 5 4 3 32 32 H 1.09004 * 109.46798 * 270.17768 * 7 6 4 33 33 H 1.09004 * 109.47083 * 30.17599 * 7 6 4 34 34 H 1.08999 * 109.47020 * 150.17712 * 7 6 4 35 35 H 1.09000 * 110.36544 * 37.07244 * 13 12 9 36 36 H 1.09002 * 110.37016 * 274.75170 * 13 12 9 37 37 H 1.09002 * 111.00594 * 155.08642 * 14 13 12 38 38 H 1.09002 * 111.00655 * 278.89906 * 14 13 12 39 39 H 0.96701 * 114.00199 * 61.45895 * 16 15 14 40 40 H 0.97003 * 120.00226 * 180.02562 * 20 19 17 41 41 H 1.09000 * 109.88531 * 300.43089 * 25 12 9 42 42 H 1.08998 * 109.88872 * 61.60809 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0013 6 6 3.6142 -0.7154 0.0045 7 6 4.8350 -1.5990 0.0109 8 6 2.3271 -1.1330 -0.0006 9 16 1.7808 -2.8082 -0.0002 10 8 0.4684 -2.8022 0.5445 11 8 2.8447 -3.5771 0.5439 12 7 1.6283 -3.2744 -1.5820 13 6 2.6883 -3.8872 -2.4031 14 6 1.9330 -4.6733 -3.5036 15 6 0.7330 -3.7328 -3.7915 16 8 1.1087 -2.6984 -4.7030 17 6 -0.4410 -4.5138 -4.3234 18 1 -1.3719 -4.5292 -3.7761 19 6 -0.3266 -5.2087 -5.5087 20 7 0.8069 -5.1896 -6.1754 21 14 -1.7815 -6.1773 -6.1677 22 1 -2.9242 -5.2577 -6.3998 23 1 -1.4035 -6.8291 -7.4473 24 1 -2.1737 -7.2147 -5.1801 25 6 0.4138 -3.1448 -2.4002 26 1 -0.3634 -0.0004 1.0276 27 1 -0.3633 0.8902 -0.5136 28 1 -0.3633 -0.8897 -0.5143 29 1 5.0832 1.7161 1.0262 30 1 5.6093 0.9979 -0.5151 31 1 4.5562 2.4329 -0.5155 32 1 5.1338 -1.8133 -1.0153 33 1 5.6489 -1.0904 0.5276 34 1 4.6052 -2.5323 0.5249 35 1 3.2918 -4.5650 -1.7993 36 1 3.3154 -3.1160 -2.8503 37 1 2.5537 -4.7974 -4.3910 38 1 1.5918 -5.6388 -3.1299 39 1 1.3937 -3.0214 -5.5687 40 1 0.8873 -5.6781 -7.0095 41 1 -0.4033 -3.7019 -1.9417 42 1 0.1412 -2.0938 -2.4953 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592073334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:51 Heat of formation + Delta-G solvation = -46.510969 kcal Electronic energy + Delta-G solvation = -27739.587166 eV Core-core repulsion = 23848.494952 eV Total energy + Delta-G solvation = -3891.092214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 11.45 seconds Orbital eigenvalues (eV) -41.43597 -38.01295 -36.93022 -35.46347 -34.31694 -34.24687 -32.30548 -32.18020 -29.63857 -29.07880 -28.25155 -27.35343 -25.65939 -24.78499 -21.60453 -21.22193 -19.82922 -19.68703 -18.47566 -17.58808 -16.98170 -16.84228 -15.92147 -15.81409 -15.16563 -14.92301 -14.45360 -14.15783 -14.04709 -13.66142 -13.63361 -13.35298 -13.20588 -12.98505 -12.77761 -12.65959 -12.16852 -12.07654 -12.04706 -12.00454 -11.72130 -11.58313 -11.50305 -11.30123 -11.18367 -11.01542 -10.80971 -10.49674 -10.47249 -10.35296 -10.06318 -9.31851 -9.21318 -9.11905 -8.63333 -8.34746 -8.16488 -6.24871 -4.32149 0.82397 1.51448 2.26674 2.32411 3.25029 3.29408 3.33105 3.55085 4.14329 4.24883 4.29105 4.29998 4.58237 4.82242 4.82364 4.95720 5.02877 5.09878 5.25011 5.32609 5.47312 5.58740 5.75604 5.81086 5.86870 5.95967 6.03296 6.04752 6.06621 6.24918 6.42567 6.52342 6.70396 6.76415 6.85815 6.99791 7.08433 7.39535 7.42710 7.47696 7.77242 8.07740 8.70110 9.34196 9.42791 10.82573 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.003966 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.500891 B = 7059.193383 C = 7123.322896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.168 3.832 3 N -0.301 5.301 4 N -0.367 5.367 5 C 0.094 3.906 6 C 0.210 3.790 7 C -0.136 4.136 8 C -0.817 4.817 9 S 2.738 3.262 10 O -0.958 6.958 11 O -0.970 6.970 12 N -1.005 6.005 13 C 0.115 3.885 14 C -0.129 4.129 15 C 0.251 3.749 16 O -0.586 6.586 17 C -0.536 4.536 18 H 0.065 0.935 19 C 0.073 3.927 20 N -0.897 5.897 21 Si 0.902 3.098 22 H -0.275 1.275 23 H -0.287 1.287 24 H -0.275 1.275 25 C 0.136 3.864 26 H 0.089 0.911 27 H 0.079 0.921 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.126 0.874 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.085 0.915 38 H 0.067 0.933 39 H 0.381 0.619 40 H 0.268 0.732 41 H 0.077 0.923 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.096 8.476 9.730 15.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.002 4.002 3 N -0.122 5.122 4 N -0.145 5.145 5 C -0.047 4.047 6 C 0.076 3.924 7 C -0.194 4.194 8 C -0.915 4.915 9 S 2.827 3.173 10 O -0.949 6.949 11 O -0.961 6.961 12 N -0.845 5.845 13 C -0.010 4.010 14 C -0.169 4.169 15 C 0.210 3.790 16 O -0.395 6.395 17 C -0.574 4.574 18 H 0.083 0.917 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.729 3.271 22 H -0.200 1.200 23 H -0.212 1.212 24 H -0.200 1.200 25 C 0.011 3.989 26 H 0.108 0.892 27 H 0.098 0.902 28 H 0.111 0.889 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.145 0.855 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.086 0.914 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.095 0.905 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 9.060 9.775 10.906 17.221 hybrid contribution -0.173 -0.834 -1.281 1.538 sum 8.887 8.940 9.625 15.861 Atomic orbital electron populations 1.20523 0.85394 1.04563 1.04312 1.21879 0.96813 0.88392 0.93074 1.77344 0.85736 1.22150 1.26936 1.48878 1.06195 1.04273 1.55153 1.21962 0.83871 0.95252 1.03647 1.20944 0.95749 0.84684 0.91041 1.21209 0.92431 1.00468 1.05263 1.31488 0.99790 1.25248 1.34932 1.00338 0.73084 0.72400 0.71456 1.93527 1.37839 1.87120 1.76403 1.93441 1.57263 1.68548 1.76798 1.58462 1.21281 1.74988 1.29743 1.22165 0.89637 0.95950 0.93213 1.23267 0.98617 0.98663 0.96381 1.19460 0.91385 0.83758 0.84406 1.86125 1.88619 1.36756 1.27985 1.21526 0.98650 1.29874 1.07362 0.91691 1.24975 0.96137 0.95584 0.96269 1.69692 1.24643 1.42949 1.16298 0.86498 0.82469 0.80034 0.78087 1.20043 1.21230 1.20016 1.21877 0.84859 1.00353 0.91787 0.89237 0.90238 0.88865 0.90377 0.89080 0.88789 0.88636 0.90168 0.85536 0.91460 0.92812 0.89638 0.91379 0.76929 0.92250 0.90510 0.92521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 9.53 36.01 0.34 -0.95 16 2 C 0.17 2.77 7.21 -82.41 -0.59 2.18 16 3 N -0.30 -4.86 12.58 33.67 0.42 -4.44 16 4 N -0.37 -4.97 4.01 -63.89 -0.26 -5.23 16 5 C 0.09 0.75 11.09 59.84 0.66 1.41 16 6 C 0.21 2.98 6.92 -82.26 -0.57 2.41 16 7 C -0.14 -1.45 9.57 36.01 0.34 -1.11 16 8 C -0.82 -13.48 6.17 -40.01 -0.25 -13.73 16 9 S 2.74 48.44 5.91 -107.50 -0.64 47.80 16 10 O -0.96 -18.51 15.48 -57.17 -0.89 -19.40 16 11 O -0.97 -17.39 14.57 -57.17 -0.83 -18.22 16 12 N -1.01 -19.04 3.70 -111.39 -0.41 -19.45 16 13 C 0.12 2.11 7.10 -2.53 -0.02 2.10 16 14 C -0.13 -2.79 5.46 -24.58 -0.13 -2.92 16 15 C 0.25 5.91 0.85 -89.91 -0.08 5.84 16 16 O -0.59 -14.33 13.07 -35.23 -0.46 -14.79 16 17 C -0.54 -13.75 8.22 -34.44 -0.28 -14.03 16 18 H 0.06 1.65 7.57 -52.48 -0.40 1.26 16 19 C 0.07 1.85 5.28 -17.82 -0.09 1.75 16 20 N -0.90 -22.73 10.69 55.43 0.59 -22.14 16 21 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 22 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 23 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.14 2.87 6.34 -3.04 -0.02 2.85 16 26 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 27 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.42 6.78 -51.93 -0.35 1.07 16 29 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.09 0.50 7.67 -51.93 -0.40 0.10 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.08 0.59 7.74 -51.93 -0.40 0.19 16 34 H 0.13 1.54 5.54 -51.93 -0.29 1.25 16 35 H 0.07 1.11 7.78 -51.93 -0.40 0.70 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.09 1.90 7.54 -51.93 -0.39 1.51 16 38 H 0.07 1.51 8.04 -51.93 -0.42 1.09 16 39 H 0.38 9.35 7.49 45.56 0.34 9.69 16 40 H 0.27 6.55 8.31 -40.82 -0.34 6.21 16 41 H 0.08 1.61 7.66 -51.93 -0.40 1.22 16 42 H 0.06 1.17 7.97 -51.93 -0.41 0.75 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -31.38 353.55 -8.04 -39.42 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.19 Total: 10.28 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: -0.68 Total: -14.19 kcal Atomic # 7 Polarization: -51.60 SS G_CDS: 0.35 Total: -51.26 kcal Atomic # 8 Polarization: -50.23 SS G_CDS: -2.18 Total: -52.41 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 48.44 SS G_CDS: -0.64 Total: 47.80 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.38 -8.04 -39.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592073334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.092 kcal (2) G-P(sol) polarization free energy of solvation -31.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.46 seconds