Wall clock time and date at job start Tue Mar 31 2020 06:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.30495 * 125.65242 * 265.03003 * 4 2 1 6 6 C 1.34127 * 109.26094 * 179.97438 * 5 4 2 7 7 C 1.34679 * 108.01687 * 359.97438 * 6 5 4 8 8 S 1.76198 * 126.58983 * 180.02562 * 7 6 5 9 9 O 1.42096 * 106.40393 * 23.51549 * 8 7 6 10 10 O 1.42095 * 106.40299 * 156.43767 * 8 7 6 11 11 N 1.65603 * 107.21768 * 269.97471 * 8 7 6 12 12 C 1.47023 * 125.65136 * 269.69281 * 11 8 7 13 13 C 1.54330 * 107.26767 * 178.84510 * 12 11 8 14 14 C 1.55158 * 103.02312 * 338.14392 * 13 12 11 15 15 O 1.42897 * 111.00236 * 277.22946 * 14 13 12 16 16 C 1.50700 * 111.00452 * 153.37536 * 14 13 12 17 17 H 1.08001 * 120.00082 * 247.80663 * 16 14 13 18 18 C 1.37883 * 119.99921 * 67.80438 * 16 14 13 19 19 N 1.31514 * 119.99568 * 0.02562 * 18 16 14 20 20 Si 1.86792 * 120.00047 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47130 * 59.99969 * 20 18 16 22 22 H 1.48503 * 109.47338 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47108 * 300.00082 * 20 18 16 24 24 C 1.47431 * 125.64829 * 89.99824 * 11 8 7 25 25 N 1.35049 * 125.64870 * 84.71902 * 4 2 1 26 26 H 0.96996 * 126.39664 * 0.02562 * 25 4 2 27 27 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 29 29 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 30 30 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 33 33 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 34 34 H 1.07996 * 125.99421 * 180.02562 * 6 5 4 35 35 H 1.08996 * 109.88217 * 298.39802 * 12 11 8 36 36 H 1.09000 * 109.87837 * 59.55950 * 12 11 8 37 37 H 1.08991 * 110.85486 * 219.67053 * 13 12 11 38 38 H 1.09006 * 110.66179 * 96.52147 * 13 12 11 39 39 H 0.96702 * 113.99971 * 292.19440 * 15 14 13 40 40 H 0.97002 * 119.99354 * 180.02562 * 19 18 16 41 41 H 1.08998 * 110.36671 * 322.93533 * 24 11 8 42 42 H 1.09001 * 110.36130 * 85.25425 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 2.3726 -1.9685 -1.2966 6 6 2.7701 -2.2542 -2.5453 7 6 2.6720 -1.1304 -3.2811 8 16 3.0694 -0.9550 -4.9887 9 8 2.9716 -2.2529 -5.5588 10 8 2.3254 0.1595 -5.4614 11 7 4.6657 -0.5238 -5.0787 12 6 5.1825 0.8526 -5.0851 13 6 6.7218 0.7637 -5.1515 14 6 7.0130 -0.6633 -4.6166 15 8 7.0252 -0.6822 -3.1878 16 6 8.3089 -1.1947 -5.1728 17 1 8.3000 -2.0246 -5.8639 18 6 9.5059 -0.6213 -4.7994 19 7 9.5167 0.3890 -3.9575 20 14 11.1123 -1.2803 -5.4883 21 1 11.1028 -1.1594 -6.9683 22 1 12.2465 -0.4979 -4.9344 23 1 11.2647 -2.7081 -5.1092 24 6 5.8038 -1.4564 -5.1721 25 7 2.1996 -0.1520 -2.4486 26 1 2.0201 0.7705 -2.6883 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 0.5139 0.8900 30 1 1.8934 -0.5137 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1300 1.4425 0.0005 34 1 3.1087 -3.2168 -2.8991 35 1 4.8022 1.3873 -5.9555 36 1 4.8817 1.3657 -4.1717 37 1 7.1819 1.5167 -4.5117 38 1 7.0692 0.8686 -6.1793 39 1 7.7643 -0.1985 -2.7944 40 1 10.3589 0.7926 -3.6951 41 1 5.6193 -2.3420 -4.5641 42 1 5.9793 -1.7378 -6.2104 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592073357.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:20 Heat of formation + Delta-G solvation = -74.418472 kcal Electronic energy + Delta-G solvation = -27275.593312 eV Core-core repulsion = 23383.290938 eV Total energy + Delta-G solvation = -3892.302374 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.22428 -38.11434 -37.09700 -35.73801 -35.70640 -34.34865 -32.66730 -32.16570 -29.38009 -29.21901 -28.34872 -27.53444 -24.91634 -23.56413 -21.89931 -21.54501 -20.54275 -19.84478 -19.18930 -18.22575 -17.36639 -17.01165 -15.89805 -15.60953 -15.45778 -15.01241 -14.95974 -14.61324 -14.31497 -14.16919 -13.79620 -13.44794 -13.27581 -13.00288 -12.57834 -12.49207 -12.07358 -11.97152 -11.96249 -11.89686 -11.84562 -11.70557 -11.57026 -11.37042 -11.27587 -11.05849 -10.83142 -10.61330 -10.50072 -10.20079 -10.18034 -10.07537 -9.48274 -8.93683 -8.72438 -8.47509 -8.23321 -6.32978 -4.40664 0.49796 1.47429 2.85332 2.89858 3.19745 3.24906 3.26726 3.31091 3.90332 4.03283 4.22808 4.48237 4.50183 4.72886 4.92559 4.93392 5.11285 5.22801 5.32023 5.33401 5.42264 5.49719 5.58128 5.72524 5.78630 5.84391 5.87168 5.88038 5.96858 6.10721 6.31001 6.48385 6.52414 6.70535 6.86091 6.96040 7.12525 7.28437 7.30606 7.70728 7.78404 7.96471 8.61354 9.28370 9.43610 10.74661 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016400 B = 0.003921 C = 0.003552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1706.874194 B = 7138.751682 C = 7881.836622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.016 4.016 3 C -0.157 4.157 4 C 0.260 3.740 5 N -0.495 5.495 6 C 0.110 3.890 7 C -0.594 4.594 8 S 2.733 3.267 9 O -0.945 6.945 10 O -0.966 6.966 11 N -0.999 5.999 12 C 0.124 3.876 13 C -0.135 4.135 14 C 0.252 3.748 15 O -0.585 6.585 16 C -0.537 4.537 17 H 0.066 0.934 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.274 1.274 24 C 0.134 3.866 25 N -0.511 5.511 26 H 0.424 0.576 27 H 0.064 0.936 28 H 0.056 0.944 29 H 0.070 0.930 30 H 0.108 0.892 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.186 0.814 35 H 0.059 0.941 36 H 0.049 0.951 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.385 0.615 40 H 0.270 0.730 41 H 0.069 0.931 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.292 3.469 5.443 14.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.215 4.215 4 C -0.007 4.007 5 N -0.215 5.215 6 C -0.046 4.046 7 C -0.790 4.790 8 S 2.819 3.181 9 O -0.935 6.935 10 O -0.956 6.956 11 N -0.839 5.839 12 C -0.001 4.001 13 C -0.175 4.175 14 C 0.210 3.790 15 O -0.395 6.395 16 C -0.576 4.576 17 H 0.085 0.915 18 C -0.130 4.130 19 N -0.538 5.538 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.010 3.990 25 N -0.113 5.113 26 H 0.264 0.736 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.089 0.911 30 H 0.126 0.874 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.086 0.914 34 H 0.203 0.797 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.406 2.524 5.414 15.596 hybrid contribution 1.608 1.018 -0.266 1.922 sum -12.798 3.542 5.148 14.242 Atomic orbital electron populations 1.21866 0.93040 1.02994 1.02480 1.19757 0.96324 0.95275 0.92282 1.21953 1.02361 0.94346 1.02810 1.23763 0.99209 0.90121 0.87607 1.70329 1.18325 1.12274 1.20548 1.22397 0.96077 0.97593 0.88527 1.34072 1.24325 0.97085 1.23531 1.00868 0.71589 0.73318 0.72366 1.93595 1.85903 1.39904 1.74060 1.93532 1.69991 1.53410 1.78674 1.58448 1.22406 1.15512 1.87504 1.21820 0.97926 0.80806 0.99584 1.23199 0.89870 1.02174 1.02262 1.19583 0.90746 0.89027 0.79629 1.86080 1.54001 1.78716 1.20681 1.21485 0.90595 1.17642 1.27832 0.91536 1.24990 0.99537 0.94096 0.94352 1.69553 1.27663 1.23136 1.33463 0.86455 0.81910 0.79157 0.79328 1.20016 1.21175 1.19964 1.22240 0.84499 0.91623 1.00653 1.42737 1.48300 1.11893 1.08368 0.73617 0.91651 0.92527 0.91124 0.87366 0.92599 0.90702 0.91425 0.79703 0.92245 0.93221 0.90044 0.91240 0.76265 0.92038 0.91216 0.90363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.18 37.16 0.34 -0.79 16 2 C -0.02 -0.15 3.39 -91.77 -0.31 -0.46 16 3 C -0.16 -1.23 8.94 37.16 0.33 -0.90 16 4 C 0.26 3.54 6.87 -155.42 -1.07 2.48 16 5 N -0.50 -8.06 11.25 -10.82 -0.12 -8.18 16 6 C 0.11 1.81 11.64 -17.81 -0.21 1.60 16 7 C -0.59 -9.54 7.27 -16.56 -0.12 -9.66 16 8 S 2.73 46.51 6.10 -107.50 -0.66 45.86 16 9 O -0.94 -17.74 17.45 -57.18 -1.00 -18.73 16 10 O -0.97 -17.19 17.60 -57.18 -1.01 -18.20 16 11 N -1.00 -18.29 3.70 -111.41 -0.41 -18.70 16 12 C 0.12 2.21 6.99 -3.06 -0.02 2.19 16 13 C -0.14 -2.81 5.64 -24.89 -0.14 -2.95 16 14 C 0.25 5.79 0.89 -89.62 -0.08 5.71 16 15 O -0.58 -14.29 13.18 -35.23 -0.46 -14.75 16 16 C -0.54 -13.43 8.25 -34.44 -0.28 -13.71 16 17 H 0.07 1.64 7.77 -52.49 -0.41 1.23 16 18 C 0.07 1.81 5.30 -17.82 -0.09 1.71 16 19 N -0.90 -22.55 10.79 55.43 0.60 -21.95 16 20 Si 0.90 19.70 29.54 -169.99 -5.02 14.68 16 21 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 22 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 24 C 0.13 2.73 6.16 -2.53 -0.02 2.72 16 25 N -0.51 -7.04 5.91 -9.45 -0.06 -7.10 16 26 H 0.42 4.78 8.16 -40.82 -0.33 4.44 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.11 1.00 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.40 7.42 -51.93 -0.39 0.01 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.19 2.73 8.06 -52.49 -0.42 2.31 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 37 H 0.08 1.77 7.85 -51.93 -0.41 1.37 16 38 H 0.07 1.44 8.03 -51.93 -0.42 1.03 16 39 H 0.39 9.67 6.93 45.56 0.32 9.98 16 40 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 41 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 42 H 0.08 1.52 8.01 -51.93 -0.42 1.11 16 LS Contribution 361.16 15.07 5.44 5.44 Total: -1.00 -30.41 361.16 -9.78 -40.19 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.41 Total: 13.51 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -1.67 Total: -12.06 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: 0.01 Total: -55.92 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -2.47 Total: -51.68 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 16 Polarization: 46.51 SS G_CDS: -0.66 Total: 45.86 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.41 -9.78 -40.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592073357.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.232 kcal (2) G-P(sol) polarization free energy of solvation -30.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds