Wall clock time and date at job start Tue Mar 31 2020 06:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99887 * 2 1 3 5 5 N 1.30497 * 125.65198 * 264.69366 * 4 2 1 6 6 C 1.34125 * 109.25760 * 179.89096 * 5 4 2 7 7 C 1.34676 * 108.01692 * 0.37366 * 6 5 4 8 8 S 1.76195 * 126.58698 * 179.74405 * 7 6 5 9 9 O 1.42098 * 106.40472 * 23.57688 * 8 7 6 10 10 O 1.42104 * 106.40109 * 156.50052 * 8 7 6 11 11 N 1.65601 * 107.21861 * 270.03780 * 8 7 6 12 12 C 1.47021 * 125.64985 * 90.02453 * 11 8 7 13 13 C 1.54315 * 107.27384 * 181.02473 * 12 11 8 14 14 C 1.55152 * 102.94278 * 22.19519 * 13 12 11 15 15 O 1.42897 * 111.00567 * 82.61050 * 14 13 12 16 16 C 1.50706 * 111.00615 * 206.42451 * 14 13 12 17 17 H 1.07993 * 119.99938 * 118.54224 * 16 14 13 18 18 C 1.37872 * 119.99882 * 298.54679 * 16 14 13 19 19 N 1.31517 * 120.00063 * 359.97438 * 18 16 14 20 20 Si 1.86806 * 120.00194 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46862 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47191 * 119.99602 * 20 18 16 23 23 H 1.48501 * 109.46813 * 239.99886 * 20 18 16 24 24 C 1.47422 * 125.64845 * 269.71999 * 11 8 7 25 25 N 1.35043 * 125.64448 * 84.99860 * 4 2 1 26 26 H 0.96998 * 126.40327 * 359.95120 * 25 4 2 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 32 32 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 33 33 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 34 34 H 1.07998 * 125.99297 * 180.18702 * 6 5 4 35 35 H 1.09004 * 109.88388 * 300.44644 * 12 11 8 36 36 H 1.09004 * 109.87969 * 61.60349 * 12 11 8 37 37 H 1.09002 * 110.72417 * 140.56056 * 13 12 11 38 38 H 1.09005 * 110.72427 * 263.65326 * 13 12 11 39 39 H 0.96699 * 113.99836 * 61.45398 * 15 14 13 40 40 H 0.97006 * 120.00120 * 180.02562 * 19 18 16 41 41 H 1.09000 * 110.36824 * 274.74309 * 24 11 8 42 42 H 1.09003 * 110.36602 * 37.07132 * 24 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 7 2.3783 -1.9671 -1.2953 6 6 2.7720 -2.2536 -2.5450 7 6 2.6737 -1.1299 -3.2807 8 16 3.0732 -0.9539 -4.9878 9 8 2.9761 -2.2515 -5.5585 10 8 2.3298 0.1610 -5.4609 11 7 4.6697 -0.5226 -5.0756 12 6 5.8046 -1.4526 -5.1682 13 6 7.0921 -0.6025 -5.2005 14 6 6.6421 0.7344 -4.5544 15 8 6.6710 0.6494 -3.1283 16 6 7.4890 1.8818 -5.0415 17 1 7.0331 2.6982 -5.5818 18 6 8.8460 1.8893 -4.7975 19 7 9.4012 0.8952 -4.1392 20 14 9.8960 3.3112 -5.4019 21 1 9.0375 4.2943 -6.1103 22 1 10.5514 3.9698 -4.2436 23 1 10.9337 2.7994 -6.3328 24 6 5.1878 0.8575 -5.0804 25 7 2.2045 -0.1506 -2.4473 26 1 2.0283 0.7728 -2.6862 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9562 0.8900 34 1 3.1114 -3.2160 -2.8986 35 1 5.8165 -2.1107 -4.2993 36 1 5.7269 -2.0425 -6.0815 37 1 7.8787 -1.0711 -4.6090 38 1 7.4250 -0.4453 -6.2265 39 1 7.5489 0.4744 -2.7624 40 1 10.3558 0.9006 -3.9671 41 1 5.1810 1.2619 -6.0926 42 1 4.5965 1.4870 -4.4154 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592073360.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:49:27 Heat of formation + Delta-G solvation = -74.741582 kcal Electronic energy + Delta-G solvation = -27331.983331 eV Core-core repulsion = 23439.666946 eV Total energy + Delta-G solvation = -3892.316385 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.22431 -38.12835 -37.09685 -35.73278 -35.68137 -34.33579 -32.65855 -32.27005 -29.33003 -29.22477 -28.35475 -27.48737 -24.92837 -23.54526 -21.93845 -21.47787 -20.51460 -19.92423 -19.16635 -18.21967 -17.35544 -16.98203 -15.93011 -15.62183 -15.35959 -15.04552 -14.99160 -14.49933 -14.39338 -14.21788 -13.81287 -13.44851 -13.24489 -13.01210 -12.53431 -12.49532 -12.08213 -11.98075 -11.94896 -11.93204 -11.84606 -11.68954 -11.52575 -11.39057 -11.24810 -11.08834 -10.85639 -10.56236 -10.48438 -10.21758 -10.18074 -10.06463 -9.48306 -8.93476 -8.74707 -8.46676 -8.26190 -6.32909 -4.41366 0.49418 1.47684 2.84410 2.91361 3.15224 3.24630 3.27133 3.30996 3.90201 4.04602 4.21717 4.48820 4.53167 4.76951 4.92629 4.93509 5.12799 5.26960 5.30490 5.32164 5.47005 5.53402 5.60171 5.73864 5.82011 5.88785 5.90014 5.93004 5.95147 6.12126 6.27856 6.46606 6.50330 6.69215 6.88019 6.96145 7.13563 7.28328 7.33848 7.69000 7.77320 7.97361 8.61478 9.25099 9.33565 10.74337 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014484 B = 0.004192 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.700603 B = 6678.554508 C = 7689.510266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.016 4.016 3 C -0.158 4.158 4 C 0.261 3.739 5 N -0.497 5.497 6 C 0.103 3.897 7 C -0.593 4.593 8 S 2.732 3.268 9 O -0.949 6.949 10 O -0.962 6.962 11 N -0.999 5.999 12 C 0.120 3.880 13 C -0.132 4.132 14 C 0.250 3.750 15 O -0.584 6.584 16 C -0.537 4.537 17 H 0.065 0.935 18 C 0.074 3.926 19 N -0.893 5.893 20 Si 0.901 3.099 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.137 3.863 25 N -0.508 5.508 26 H 0.426 0.574 27 H 0.056 0.944 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.108 0.892 31 H 0.068 0.932 32 H 0.056 0.944 33 H 0.074 0.926 34 H 0.185 0.815 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.069 0.931 39 H 0.381 0.619 40 H 0.267 0.733 41 H 0.079 0.921 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 -1.885 5.571 13.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.036 4.036 3 C -0.215 4.215 4 C -0.006 4.006 5 N -0.216 5.216 6 C -0.053 4.053 7 C -0.789 4.789 8 S 2.818 3.182 9 O -0.939 6.939 10 O -0.952 6.952 11 N -0.839 5.839 12 C -0.005 4.005 13 C -0.172 4.172 14 C 0.209 3.791 15 O -0.393 6.393 16 C -0.576 4.576 17 H 0.084 0.916 18 C -0.129 4.129 19 N -0.532 5.532 20 Si 0.729 3.271 21 H -0.196 1.196 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.013 3.987 25 N -0.109 5.109 26 H 0.266 0.734 27 H 0.075 0.925 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.126 0.874 31 H 0.087 0.913 32 H 0.075 0.925 33 H 0.093 0.907 34 H 0.202 0.798 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.231 0.769 40 H 0.077 0.923 41 H 0.097 0.903 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.117 -2.554 5.529 14.462 hybrid contribution 1.479 1.457 -0.263 2.093 sum -11.638 -1.097 5.266 12.821 Atomic orbital electron populations 1.21867 0.93064 1.02923 1.02528 1.19762 0.96301 0.95373 0.92187 1.21957 1.02543 0.94211 1.02838 1.23761 0.99097 0.90065 0.87657 1.70318 1.18408 1.12424 1.20475 1.22362 0.96817 0.97480 0.88615 1.34075 1.24296 0.96972 1.23537 1.00891 0.71687 0.73257 0.72378 1.93580 1.86047 1.40086 1.74141 1.93550 1.69842 1.53263 1.78548 1.58454 1.21975 1.15922 1.87557 1.21902 0.86792 0.91809 0.99982 1.23163 0.94078 0.97624 1.02295 1.19658 0.88466 0.91747 0.79239 1.86089 1.36184 1.95119 1.21871 1.21501 0.92615 1.06591 1.36890 0.91646 1.24982 0.97812 0.96032 0.94091 1.69727 1.12289 1.30901 1.40328 0.86388 0.80056 0.82071 0.78591 1.19594 1.20850 1.20808 1.22227 0.96425 0.79543 1.00543 1.42748 1.47850 1.11864 1.08402 0.73428 0.92504 0.91109 0.91709 0.87418 0.91263 0.92538 0.90725 0.79812 0.92578 0.92129 0.89599 0.91265 0.76880 0.92262 0.90306 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.18 37.16 0.34 -0.83 16 2 C -0.02 -0.16 3.39 -91.77 -0.31 -0.47 16 3 C -0.16 -1.37 8.94 37.15 0.33 -1.03 16 4 C 0.26 3.60 6.87 -155.41 -1.07 2.54 16 5 N -0.50 -7.92 11.25 -10.81 -0.12 -8.04 16 6 C 0.10 1.64 11.64 -17.81 -0.21 1.43 16 7 C -0.59 -9.47 7.27 -16.56 -0.12 -9.59 16 8 S 2.73 46.41 6.10 -107.50 -0.66 45.75 16 9 O -0.95 -17.27 17.45 -57.17 -1.00 -18.27 16 10 O -0.96 -17.65 17.60 -57.17 -1.01 -18.66 16 11 N -1.00 -18.23 3.70 -111.29 -0.41 -18.64 16 12 C 0.12 2.17 6.99 -3.07 -0.02 2.15 16 13 C -0.13 -2.75 5.37 -24.90 -0.13 -2.89 16 14 C 0.25 5.68 0.87 -89.50 -0.08 5.60 16 15 O -0.58 -13.87 13.17 -35.23 -0.46 -14.33 16 16 C -0.54 -13.33 8.27 -34.44 -0.28 -13.62 16 17 H 0.07 1.61 7.79 -52.49 -0.41 1.20 16 18 C 0.07 1.82 5.29 -17.82 -0.09 1.73 16 19 N -0.89 -22.27 10.76 55.43 0.60 -21.68 16 20 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 21 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 22 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 C 0.14 2.75 6.17 -2.41 -0.01 2.73 16 25 N -0.51 -7.22 5.91 -9.44 -0.06 -7.28 16 26 H 0.43 5.19 8.16 -40.82 -0.33 4.85 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.46 7.42 -51.93 -0.39 0.07 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.18 2.52 8.06 -52.49 -0.42 2.09 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.09 1.89 7.55 -51.93 -0.39 1.49 16 38 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 39 H 0.38 9.23 7.56 45.56 0.34 9.58 16 40 H 0.27 6.42 8.31 -40.82 -0.34 6.08 16 41 H 0.08 1.53 8.03 -51.93 -0.42 1.11 16 42 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 LS Contribution 361.23 15.07 5.44 5.44 Total: -1.00 -30.11 361.23 -9.73 -39.84 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: -5.37 Total: 13.55 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: -1.66 Total: -12.24 kcal Atomic # 7 Polarization: -55.64 SS G_CDS: 0.01 Total: -55.63 kcal Atomic # 8 Polarization: -48.79 SS G_CDS: -2.47 Total: -51.26 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.66 Total: 45.75 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.11 -9.73 -39.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592073360.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.901 kcal (2) G-P(sol) polarization free energy of solvation -30.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds