Wall clock time and date at job start Tue Mar 31 2020 07:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47171 * 2 1 4 4 N 1.46492 * 109.47474 * 120.00552 * 2 1 3 5 5 C 1.34956 * 126.03874 * 275.26193 * 4 2 1 6 6 C 1.35312 * 107.74413 * 180.14473 * 5 4 2 7 7 S 1.76208 * 126.03595 * 179.87148 * 6 5 4 8 8 O 1.42100 * 106.39836 * 156.17460 * 7 6 5 9 9 O 1.42101 * 106.40249 * 23.25459 * 7 6 5 10 10 N 1.65601 * 107.21791 * 269.71609 * 7 6 5 11 11 C 1.47022 * 125.64825 * 89.97486 * 10 7 6 12 12 C 1.54327 * 107.26741 * 178.97550 * 11 10 7 13 13 C 1.55150 * 102.94568 * 337.80866 * 12 11 10 14 14 O 1.42905 * 111.00581 * 277.42771 * 13 12 11 15 15 C 1.50701 * 111.00497 * 153.61292 * 13 12 11 16 16 H 1.07994 * 120.00187 * 244.57899 * 15 13 12 17 17 C 1.37878 * 119.99769 * 64.58397 * 15 13 12 18 18 N 1.31509 * 120.00073 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 119.99731 * 180.02562 * 17 15 13 20 20 H 1.48498 * 109.47016 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.46880 * 119.99821 * 19 17 15 22 22 H 1.48498 * 109.46921 * 239.99525 * 19 17 15 23 23 C 1.47525 * 125.63234 * 270.01336 * 10 7 6 24 24 C 1.39866 * 107.92635 * 359.60768 * 6 5 4 25 25 N 1.30841 * 108.19769 * 0.24357 * 24 6 5 26 26 H 1.08999 * 109.47212 * 299.99582 * 1 2 3 27 27 H 1.09002 * 109.47533 * 59.99073 * 1 2 3 28 28 H 1.08996 * 109.46961 * 179.97438 * 1 2 3 29 29 H 1.09008 * 109.47121 * 240.00667 * 2 1 3 30 30 H 1.09004 * 109.46600 * 60.00837 * 3 2 1 31 31 H 1.09000 * 109.47346 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47738 * 300.00418 * 3 2 1 33 33 H 1.07995 * 126.12222 * 359.97438 * 5 4 2 34 34 H 1.08995 * 109.87982 * 59.56186 * 11 10 7 35 35 H 1.08997 * 109.88284 * 298.39430 * 11 10 7 36 36 H 1.09001 * 110.71861 * 219.44470 * 12 11 10 37 37 H 1.08999 * 110.86844 * 96.24789 * 12 11 10 38 38 H 0.96697 * 113.99904 * 295.42106 * 14 13 12 39 39 H 0.97000 * 120.00160 * 180.02562 * 18 17 15 40 40 H 1.09001 * 110.36898 * 85.27686 * 23 10 7 41 41 H 1.08991 * 110.41716 * 322.91958 * 23 10 7 42 42 H 1.07993 * 125.90330 * 180.25789 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.1887 -0.1407 2.4166 6 6 2.6568 -1.1053 3.2419 7 16 3.0495 -0.9088 4.9484 8 8 2.9537 -2.2002 5.5334 9 8 2.3014 0.2093 5.4061 10 7 4.6445 -0.4723 5.0372 11 6 5.1579 0.9053 5.0218 12 6 6.6936 0.8233 5.1516 13 6 6.9136 -0.5683 5.8015 14 8 6.7436 -0.5043 7.2190 15 6 8.2700 -1.1214 5.4475 16 1 8.3485 -2.0200 4.8538 17 6 9.4107 -0.4802 5.8819 18 7 9.3151 0.6143 6.6046 19 14 11.0920 -1.1655 5.4425 20 1 10.9275 -2.3957 4.6272 21 1 11.8511 -0.1536 4.6648 22 1 11.8339 -1.4923 6.6866 23 6 5.7852 -1.4016 5.1441 24 6 2.7681 -2.2875 2.5028 25 7 2.3857 -2.0401 1.2762 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8901 30 1 1.6767 1.9562 0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6766 1.9564 -0.8899 33 1 1.9899 0.8862 2.6855 34 1 4.7443 1.4644 5.8610 35 1 4.8906 1.3900 4.0829 36 1 7.0686 1.6153 5.7998 37 1 7.1691 0.8710 4.1720 38 1 7.3982 0.0470 7.6691 39 1 10.1176 1.0656 6.9099 40 1 6.0918 -1.7414 4.1549 41 1 5.5252 -2.2519 5.7744 42 1 3.1103 -3.2400 2.8794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074061.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:19 Heat of formation + Delta-G solvation = -45.120032 kcal Electronic energy + Delta-G solvation = -27004.154105 eV Core-core repulsion = 23113.122207 eV Total energy + Delta-G solvation = -3891.031899 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.40 seconds Orbital eigenvalues (eV) -41.47196 -37.96886 -36.77787 -36.15869 -35.40525 -34.19783 -32.13610 -30.66335 -30.25772 -29.16226 -28.22225 -27.82688 -24.81606 -23.73180 -21.86971 -21.38750 -20.36270 -19.75413 -18.75006 -17.85266 -17.29993 -16.72581 -15.77329 -15.66089 -15.31717 -15.08217 -14.93274 -14.46253 -14.36432 -14.06896 -13.42140 -13.28980 -13.28033 -12.80720 -12.76709 -12.68122 -12.37670 -11.96949 -11.91168 -11.86972 -11.71924 -11.69140 -11.59308 -11.40562 -11.30630 -10.99838 -10.76777 -10.59059 -10.47000 -10.39550 -9.98624 -9.71276 -9.36157 -9.28583 -8.66548 -8.29757 -8.13932 -6.26004 -4.33617 0.81709 1.48425 2.15462 2.28818 3.19854 3.29222 3.33196 3.57942 3.99364 4.24210 4.28013 4.34773 4.35684 4.54052 4.59664 4.86395 4.96959 5.01457 5.05976 5.16692 5.28589 5.39069 5.46404 5.49389 5.58947 5.62503 5.84309 6.01554 6.05615 6.28018 6.31488 6.46935 6.64565 6.68977 6.86989 6.98349 7.11373 7.34396 7.38299 7.41015 7.77152 8.06470 8.68943 9.35220 9.50196 10.81493 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.017138 B = 0.003602 C = 0.003361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.387766 B = 7771.229957 C = 8329.368993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.147 3.853 3 C -0.170 4.170 4 N -0.357 5.357 5 C 0.175 3.825 6 C -0.812 4.812 7 S 2.738 3.262 8 O -0.959 6.959 9 O -0.970 6.970 10 N -1.004 6.004 11 C 0.124 3.876 12 C -0.134 4.134 13 C 0.252 3.748 14 O -0.582 6.582 15 C -0.534 4.534 16 H 0.065 0.935 17 C 0.072 3.928 18 N -0.895 5.895 19 Si 0.902 3.098 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 C 0.131 3.869 24 C 0.135 3.865 25 N -0.297 5.297 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.067 0.933 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.187 0.813 34 H 0.061 0.939 35 H 0.045 0.955 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.383 0.617 39 H 0.267 0.733 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 3.128 -12.708 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.045 3.955 3 C -0.228 4.228 4 N -0.136 5.136 5 C 0.022 3.978 6 C -0.909 4.909 7 S 2.827 3.173 8 O -0.950 6.950 9 O -0.961 6.961 10 N -0.843 5.843 11 C -0.001 4.001 12 C -0.173 4.173 13 C 0.211 3.789 14 O -0.391 6.391 15 C -0.573 4.573 16 H 0.084 0.916 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.210 1.210 22 H -0.208 1.208 23 C 0.007 3.993 24 C -0.054 4.054 25 N -0.115 5.115 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.204 0.796 34 H 0.080 0.920 35 H 0.063 0.937 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.233 0.767 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -14.798 2.298 -13.466 20.140 hybrid contribution 1.713 0.502 -0.186 1.795 sum -13.085 2.799 -13.653 19.117 Atomic orbital electron populations 1.22264 0.93190 1.03563 1.03461 1.21448 0.95154 0.93099 0.85764 1.22268 1.02844 0.93602 1.04120 1.49426 1.48088 1.07751 1.08316 1.22340 0.92179 0.99003 0.84250 1.32007 1.29402 1.00860 1.28680 1.00410 0.71244 0.73000 0.72667 1.93537 1.85769 1.40791 1.74862 1.93514 1.69767 1.53342 1.79439 1.58427 1.22533 1.15080 1.88276 1.21771 0.97792 0.81208 0.99304 1.23163 0.90094 1.02213 1.01870 1.19571 0.90695 0.89235 0.79422 1.86119 1.58233 1.74219 1.20576 1.21544 0.90250 1.11450 1.34059 0.91629 1.24991 0.99586 0.94339 0.94153 1.69665 1.29698 1.17919 1.36224 0.86384 0.83289 0.79074 0.78314 1.19619 1.20957 1.20812 1.22198 0.84933 0.92404 0.99800 1.23547 0.94519 0.97913 0.89458 1.77388 1.21192 0.92549 1.20356 0.91591 0.90110 0.91438 0.87468 0.91154 0.90994 0.89534 0.79576 0.92015 0.93697 0.89908 0.91643 0.76685 0.92272 0.91396 0.90518 0.78560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.07 9.52 37.15 0.35 -0.71 16 2 C 0.15 1.15 3.93 -67.94 -0.27 0.88 16 3 C -0.17 -1.00 8.84 37.16 0.33 -0.67 16 4 N -0.36 -4.24 3.52 -54.87 -0.19 -4.43 16 5 C 0.18 2.19 10.33 -17.22 -0.18 2.01 16 6 C -0.81 -11.99 6.17 -40.02 -0.25 -12.24 16 7 S 2.74 47.89 6.08 -107.50 -0.65 47.24 16 8 O -0.96 -19.10 17.20 -57.17 -0.98 -20.08 16 9 O -0.97 -18.23 17.43 -57.17 -1.00 -19.23 16 10 N -1.00 -18.91 3.70 -111.35 -0.41 -19.33 16 11 C 0.12 2.29 6.99 -3.06 -0.02 2.27 16 12 C -0.13 -2.85 5.51 -24.90 -0.14 -2.99 16 13 C 0.25 5.99 0.88 -89.62 -0.08 5.92 16 14 O -0.58 -14.82 13.17 -35.23 -0.46 -15.28 16 15 C -0.53 -13.62 8.25 -34.44 -0.28 -13.90 16 16 H 0.07 1.65 7.78 -52.49 -0.41 1.24 16 17 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 18 N -0.90 -22.83 10.76 55.43 0.60 -22.24 16 19 Si 0.90 19.93 29.54 -169.99 -5.02 14.91 16 20 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 21 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 22 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 23 C 0.13 2.74 6.29 -2.47 -0.02 2.73 16 24 C 0.13 1.94 11.82 -17.36 -0.21 1.74 16 25 N -0.30 -4.21 12.58 30.62 0.39 -3.82 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 30 H 0.07 0.38 7.16 -51.93 -0.37 0.01 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.19 1.79 7.27 -52.49 -0.38 1.41 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.08 1.86 7.68 -51.93 -0.40 1.46 16 37 H 0.06 1.38 8.03 -51.93 -0.42 0.97 16 38 H 0.38 9.76 7.25 45.56 0.33 10.10 16 39 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 40 H 0.07 1.31 8.03 -51.93 -0.42 0.89 16 41 H 0.08 1.65 7.78 -51.93 -0.40 1.25 16 42 H 0.20 2.44 8.06 -52.49 -0.42 2.01 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -31.95 361.58 -8.55 -40.50 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.41 Total: 9.55 kcal Atomic # 6 Polarization: -12.39 SS G_CDS: -0.85 Total: -13.24 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.38 Total: -49.82 kcal Atomic # 8 Polarization: -52.15 SS G_CDS: -2.44 Total: -54.59 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.02 Total: 14.91 kcal Atomic # 16 Polarization: 47.89 SS G_CDS: -0.65 Total: 47.24 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.95 -8.55 -40.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074061.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.624 kcal (2) G-P(sol) polarization free energy of solvation -31.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.40 seconds