Wall clock time and date at job start Tue Mar 31 2020 07:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.34949 * 126.03339 * 84.99638 * 4 2 1 6 6 C 1.35319 * 107.74151 * 179.97438 * 5 4 2 7 7 S 1.76202 * 126.03631 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40120 * 203.54061 * 7 6 5 9 9 O 1.42098 * 106.40380 * 336.46185 * 7 6 5 10 10 N 1.65601 * 107.21820 * 90.00276 * 7 6 5 11 11 C 1.47019 * 125.64742 * 90.02392 * 10 7 6 12 12 C 1.54333 * 107.27028 * 181.02360 * 11 10 7 13 13 C 1.55154 * 102.93951 * 22.19073 * 12 11 10 14 14 O 1.42898 * 111.00557 * 82.61309 * 13 12 11 15 15 C 1.50701 * 111.00227 * 206.42443 * 13 12 11 16 16 H 1.08002 * 119.99842 * 118.54950 * 15 13 12 17 17 C 1.37876 * 120.00330 * 298.54569 * 15 13 12 18 18 N 1.31523 * 119.99705 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00328 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46695 * 90.00556 * 19 17 15 21 21 H 1.48498 * 109.47420 * 210.00152 * 19 17 15 22 22 H 1.48493 * 109.47187 * 330.00660 * 19 17 15 23 23 C 1.47424 * 125.64913 * 269.71494 * 10 7 6 24 24 C 1.39863 * 107.92335 * 0.02562 * 6 5 4 25 25 N 1.30842 * 108.20032 * 359.73867 * 24 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.08000 * 126.12934 * 359.96379 * 5 4 2 34 34 H 1.09004 * 109.88619 * 300.43459 * 11 10 7 35 35 H 1.08997 * 109.88651 * 61.60802 * 11 10 7 36 36 H 1.09001 * 110.72037 * 140.55678 * 12 11 10 37 37 H 1.09005 * 110.71817 * 263.65367 * 12 11 10 38 38 H 0.96699 * 113.99901 * 61.45305 * 14 13 12 39 39 H 0.97000 * 120.00117 * 179.97438 * 18 17 15 40 40 H 1.09008 * 110.36887 * 274.74930 * 23 10 7 41 41 H 1.09003 * 110.36761 * 37.06510 * 23 10 7 42 42 H 1.07998 * 125.90269 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1933 -0.1393 -2.4153 6 6 2.6571 -1.1051 -3.2419 7 16 3.0507 -0.9083 -4.9481 8 8 2.9557 -2.1997 -5.5334 9 8 2.3025 0.2096 -5.4061 10 7 4.6456 -0.4713 -5.0360 11 6 5.7829 -1.3967 -5.1429 12 6 7.0679 -0.5423 -5.1694 13 6 6.6158 0.7857 -4.5067 14 8 6.6495 0.6846 -3.0817 15 6 7.4578 1.9412 -4.9833 16 1 6.9976 2.7624 -5.5127 17 6 8.8155 1.9501 -4.7434 18 7 9.3759 0.9498 -4.0990 19 14 9.8592 3.3819 -5.3348 20 1 9.9169 4.4224 -4.2768 21 1 11.2328 2.9032 -5.6336 22 1 9.2576 3.9585 -6.5639 23 6 5.1596 0.9104 -5.0266 24 6 2.7689 -2.2872 -2.5027 25 7 2.3913 -2.0386 -1.2749 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.9980 0.8885 -2.6834 34 1 5.7997 -2.0646 -4.2816 35 1 5.7042 -1.9763 -6.0626 36 1 7.8577 -1.0153 -4.5857 37 1 7.3969 -0.3724 -6.1946 38 1 7.5290 0.5081 -2.7206 39 1 10.3311 0.9558 -3.9305 40 1 5.1483 1.3264 -6.0341 41 1 4.5684 1.5306 -4.3527 42 1 3.1117 -3.2396 -2.8792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592074064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:30 Heat of formation + Delta-G solvation = -45.677559 kcal Electronic energy + Delta-G solvation = -27315.344206 eV Core-core repulsion = 23424.288131 eV Total energy + Delta-G solvation = -3891.056075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.33801 -37.99378 -36.78398 -36.02157 -35.42711 -34.21501 -32.20805 -30.53637 -30.13500 -29.14399 -28.23511 -27.67945 -24.83286 -23.60614 -21.81655 -21.31656 -20.25101 -19.77659 -18.68580 -17.88853 -17.13540 -16.82993 -15.68300 -15.54921 -15.27754 -15.01789 -14.94080 -14.37770 -14.29790 -14.11526 -13.38403 -13.24226 -13.11233 -12.85143 -12.67372 -12.52947 -12.36862 -11.92734 -11.84738 -11.75765 -11.74075 -11.71083 -11.62273 -11.31762 -11.30757 -11.01412 -10.76701 -10.56959 -10.48172 -10.38600 -9.98039 -9.57777 -9.39482 -9.15758 -8.68290 -8.29293 -8.18750 -6.27238 -4.35256 0.85779 1.63681 2.28460 2.40185 3.19894 3.27682 3.30885 3.57762 4.11845 4.25588 4.26630 4.45429 4.50079 4.67929 4.70942 4.92597 4.99835 5.11183 5.17580 5.31996 5.41016 5.46523 5.51272 5.58149 5.71019 5.79033 5.90214 6.00010 6.06979 6.24995 6.40327 6.42840 6.65362 6.79537 6.86144 6.99630 7.10788 7.37007 7.41710 7.46802 7.74912 8.05297 8.67374 9.31656 9.39923 10.79929 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.004191 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.160540 B = 6679.331698 C = 7668.811060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.147 3.853 3 C -0.171 4.171 4 N -0.356 5.356 5 C 0.183 3.817 6 C -0.810 4.810 7 S 2.738 3.262 8 O -0.967 6.967 9 O -0.969 6.969 10 N -1.004 6.004 11 C 0.123 3.877 12 C -0.132 4.132 13 C 0.250 3.750 14 O -0.584 6.584 15 C -0.536 4.536 16 H 0.065 0.935 17 C 0.073 3.927 18 N -0.895 5.895 19 Si 0.901 3.099 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 C 0.138 3.862 24 C 0.134 3.866 25 N -0.297 5.297 26 H 0.066 0.934 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.107 0.893 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.187 0.813 34 H 0.053 0.947 35 H 0.057 0.943 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.380 0.620 39 H 0.267 0.733 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.437 -1.982 6.694 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.046 3.954 3 C -0.229 4.229 4 N -0.134 5.134 5 C 0.030 3.970 6 C -0.908 4.908 7 S 2.828 3.172 8 O -0.957 6.957 9 O -0.960 6.960 10 N -0.843 5.843 11 C -0.002 4.002 12 C -0.172 4.172 13 C 0.209 3.791 14 O -0.392 6.392 15 C -0.575 4.575 16 H 0.083 0.917 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.728 3.272 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C 0.014 3.986 24 C -0.055 4.055 25 N -0.115 5.115 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.204 0.796 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.229 0.771 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.081 0.919 42 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.823 -2.515 7.379 15.870 hybrid contribution 1.611 0.934 -0.190 1.872 sum -12.212 -1.581 7.188 14.258 Atomic orbital electron populations 1.22262 0.93301 1.03416 1.03415 1.21443 0.94984 0.93230 0.85744 1.22276 1.03236 0.93432 1.03980 1.49365 1.47944 1.07722 1.08364 1.22312 0.91654 0.98843 0.84239 1.31825 1.29700 1.00815 1.28436 1.00357 0.71245 0.72794 0.72843 1.93518 1.86005 1.40928 1.75271 1.93527 1.69581 1.53238 1.79618 1.58439 1.22135 1.15503 1.88239 1.21817 0.86871 0.91919 0.99626 1.23151 0.94220 0.97703 1.02106 1.19655 0.88712 0.91639 0.79125 1.86093 1.35904 1.95045 1.22160 1.21492 0.92602 1.06016 1.37360 0.91714 1.24981 0.97793 0.96025 0.94150 1.69726 1.12094 1.30655 1.40898 0.86454 0.79301 0.82169 0.79245 1.20548 1.21132 1.19685 1.22152 0.96225 0.79918 1.00316 1.23450 0.94813 0.97744 0.89536 1.77345 1.21181 0.92845 1.20170 0.91537 0.91628 0.90153 0.87536 0.91187 0.89635 0.90663 0.79639 0.92877 0.92469 0.89821 0.91428 0.77066 0.92306 0.90655 0.91882 0.78858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 9.52 37.16 0.35 -0.90 16 2 C 0.15 1.40 3.93 -67.93 -0.27 1.13 16 3 C -0.17 -1.38 8.84 37.16 0.33 -1.05 16 4 N -0.36 -4.80 3.53 -54.86 -0.19 -4.99 16 5 C 0.18 2.61 10.33 -17.22 -0.18 2.43 16 6 C -0.81 -12.91 6.17 -40.01 -0.25 -13.16 16 7 S 2.74 47.89 6.08 -107.50 -0.65 47.24 16 8 O -0.97 -18.27 17.45 -57.17 -1.00 -19.27 16 9 O -0.97 -18.36 17.43 -57.17 -1.00 -19.36 16 10 N -1.00 -18.85 3.70 -111.29 -0.41 -19.27 16 11 C 0.12 2.29 6.99 -3.06 -0.02 2.27 16 12 C -0.13 -2.82 5.37 -24.89 -0.13 -2.96 16 13 C 0.25 5.76 0.87 -89.51 -0.08 5.69 16 14 O -0.58 -14.00 13.17 -35.23 -0.46 -14.46 16 15 C -0.54 -13.47 8.27 -34.44 -0.28 -13.76 16 16 H 0.06 1.61 7.79 -52.49 -0.41 1.20 16 17 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 18 N -0.89 -22.57 10.76 55.43 0.60 -21.97 16 19 Si 0.90 19.76 29.54 -169.99 -5.02 14.74 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.29 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 C 0.14 2.84 6.17 -2.41 -0.01 2.82 16 24 C 0.13 2.06 11.82 -17.37 -0.21 1.86 16 25 N -0.30 -4.59 12.58 30.62 0.39 -4.20 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.11 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.54 7.16 -51.93 -0.37 0.17 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.19 2.18 7.26 -52.49 -0.38 1.80 16 34 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 1.87 7.55 -51.93 -0.39 1.48 16 37 H 0.07 1.46 8.04 -51.93 -0.42 1.05 16 38 H 0.38 9.28 7.56 45.56 0.34 9.63 16 39 H 0.27 6.50 8.31 -40.82 -0.34 6.17 16 40 H 0.08 1.50 8.04 -51.92 -0.42 1.08 16 41 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 LS Contribution 362.14 15.07 5.46 5.46 Total: -1.00 -30.91 362.14 -8.55 -39.46 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -5.41 Total: 10.50 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: -0.84 Total: -13.89 kcal Atomic # 7 Polarization: -50.80 SS G_CDS: 0.38 Total: -50.43 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -2.46 Total: -53.09 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -5.02 Total: 14.74 kcal Atomic # 16 Polarization: 47.89 SS G_CDS: -0.65 Total: 47.24 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.91 -8.55 -39.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.216 kcal (2) G-P(sol) polarization free energy of solvation -30.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds