Wall clock time and date at job start Tue Mar 31 2020 07:05:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.34949 * 126.03339 * 84.99638 * 4 2 1 6 6 C 1.35319 * 107.74151 * 179.97438 * 5 4 2 7 7 S 1.76202 * 126.03631 * 180.02562 * 6 5 4 8 8 O 1.42100 * 106.40120 * 203.54061 * 7 6 5 9 9 O 1.42098 * 106.40380 * 336.46185 * 7 6 5 10 10 N 1.65601 * 107.21820 * 90.00276 * 7 6 5 11 11 C 1.47019 * 125.64742 * 90.02392 * 10 7 6 12 12 C 1.54333 * 107.27028 * 181.02360 * 11 10 7 13 13 C 1.55154 * 102.93951 * 22.19073 * 12 11 10 14 14 O 1.42898 * 111.00557 * 82.61309 * 13 12 11 15 15 C 1.50701 * 111.00227 * 206.42443 * 13 12 11 16 16 H 1.08002 * 119.99842 * 118.54950 * 15 13 12 17 17 C 1.37876 * 120.00330 * 298.54569 * 15 13 12 18 18 N 1.31523 * 119.99705 * 0.02562 * 17 15 13 19 19 Si 1.86798 * 120.00328 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46695 * 90.00556 * 19 17 15 21 21 H 1.48498 * 109.47420 * 210.00152 * 19 17 15 22 22 H 1.48493 * 109.47187 * 330.00660 * 19 17 15 23 23 C 1.47424 * 125.64913 * 269.71494 * 10 7 6 24 24 C 1.39863 * 107.92335 * 0.02562 * 6 5 4 25 25 N 1.30842 * 108.20032 * 359.73867 * 24 6 5 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 30 30 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 31 31 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 32 32 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 33 33 H 1.08000 * 126.12934 * 359.96379 * 5 4 2 34 34 H 1.09004 * 109.88619 * 300.43459 * 11 10 7 35 35 H 1.08997 * 109.88651 * 61.60802 * 11 10 7 36 36 H 1.09001 * 110.72037 * 140.55678 * 12 11 10 37 37 H 1.09005 * 110.71817 * 263.65367 * 12 11 10 38 38 H 0.96699 * 113.99901 * 61.45305 * 14 13 12 39 39 H 0.97000 * 120.00117 * 179.97438 * 18 17 15 40 40 H 1.09008 * 110.36887 * 274.74930 * 23 10 7 41 41 H 1.09003 * 110.36761 * 37.06510 * 23 10 7 42 42 H 1.07998 * 125.90269 * 179.97438 * 24 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1933 -0.1393 -2.4153 6 6 2.6571 -1.1051 -3.2419 7 16 3.0507 -0.9083 -4.9481 8 8 2.9557 -2.1997 -5.5334 9 8 2.3025 0.2096 -5.4061 10 7 4.6456 -0.4713 -5.0360 11 6 5.7829 -1.3967 -5.1429 12 6 7.0679 -0.5423 -5.1694 13 6 6.6158 0.7857 -4.5067 14 8 6.6495 0.6846 -3.0817 15 6 7.4578 1.9412 -4.9833 16 1 6.9976 2.7624 -5.5127 17 6 8.8155 1.9501 -4.7434 18 7 9.3759 0.9498 -4.0990 19 14 9.8592 3.3819 -5.3348 20 1 9.9169 4.4224 -4.2768 21 1 11.2328 2.9032 -5.6336 22 1 9.2576 3.9585 -6.5639 23 6 5.1596 0.9104 -5.0266 24 6 2.7689 -2.2872 -2.5027 25 7 2.3913 -2.0386 -1.2749 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 1.6767 1.9563 0.8899 32 1 3.1300 1.4425 0.0005 33 1 1.9980 0.8885 -2.6834 34 1 5.7997 -2.0646 -4.2816 35 1 5.7042 -1.9763 -6.0626 36 1 7.8577 -1.0153 -4.5857 37 1 7.3969 -0.3724 -6.1946 38 1 7.5290 0.5081 -2.7206 39 1 10.3311 0.9558 -3.9305 40 1 5.1483 1.3264 -6.0341 41 1 4.5684 1.5306 -4.3527 42 1 3.1117 -3.2396 -2.8792 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592074064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:27 Heat of formation + Delta-G solvation = -68.986824 kcal Electronic energy + Delta-G solvation = -27316.354972 eV Core-core repulsion = 23424.288131 eV Total energy + Delta-G solvation = -3892.066840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -42.42739 -39.67515 -38.23465 -36.89255 -36.82648 -35.96082 -34.12351 -31.63925 -31.16366 -30.82135 -29.91341 -28.29516 -26.65871 -24.57065 -23.16578 -22.70080 -21.59169 -21.15960 -20.00107 -19.30050 -18.71449 -18.38955 -16.90949 -16.82205 -16.73988 -16.45099 -16.10218 -15.90800 -15.74358 -15.15273 -15.03304 -14.46787 -14.22729 -14.05731 -13.98439 -13.61089 -13.36235 -13.32127 -13.25028 -13.17549 -13.12798 -13.08129 -12.93569 -12.74558 -12.54142 -12.46725 -12.23293 -12.12972 -12.09451 -11.80131 -11.72033 -11.14913 -10.68044 -10.57982 -10.30521 -10.04687 -9.79869 -8.16853 -6.30949 -0.52923 0.52062 1.19823 1.34166 1.45425 1.49161 1.57208 2.18084 2.44425 2.86053 3.07687 3.11717 3.45883 3.63310 3.79422 3.80627 3.88280 4.00746 4.18166 4.28530 4.33877 4.46974 4.49135 4.57280 4.65193 4.67071 4.73677 4.79230 4.81229 5.01924 5.09414 5.15490 5.28120 5.30464 5.33935 5.49133 5.56642 5.65279 5.81218 5.86041 6.18869 6.34538 6.74158 7.39448 7.47267 8.88495 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.004191 C = 0.003650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.160540 B = 6679.331698 C = 7668.811060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.136 3.864 3 C -0.168 4.168 4 N -0.350 5.350 5 C 0.180 3.820 6 C -0.826 4.826 7 S 2.757 3.243 8 O -0.981 6.981 9 O -0.984 6.984 10 N -1.007 6.007 11 C 0.124 3.876 12 C -0.125 4.125 13 C 0.236 3.764 14 O -0.588 6.588 15 C -0.558 4.558 16 H 0.060 0.940 17 C 0.036 3.964 18 N -0.909 5.909 19 Si 0.955 3.045 20 H -0.279 1.279 21 H -0.284 1.284 22 H -0.270 1.270 23 C 0.141 3.859 24 C 0.125 3.875 25 N -0.316 5.316 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.115 0.885 32 H 0.053 0.947 33 H 0.209 0.791 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.374 0.626 39 H 0.268 0.732 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.415 -1.336 7.368 15.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.036 3.964 3 C -0.226 4.226 4 N -0.128 5.128 5 C 0.025 3.975 6 C -0.927 4.927 7 S 2.849 3.151 8 O -0.972 6.972 9 O -0.975 6.975 10 N -0.845 5.845 11 C -0.001 4.001 12 C -0.165 4.165 13 C 0.195 3.805 14 O -0.395 6.395 15 C -0.596 4.596 16 H 0.078 0.922 17 C -0.165 4.165 18 N -0.548 5.548 19 Si 0.781 3.219 20 H -0.205 1.205 21 H -0.210 1.210 22 H -0.195 1.195 23 C 0.016 3.984 24 C -0.064 4.064 25 N -0.134 5.134 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.133 0.867 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.223 0.777 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -14.805 -1.873 8.043 16.952 hybrid contribution 1.868 0.749 -0.305 2.035 sum -12.937 -1.124 7.738 15.116 Atomic orbital electron populations 1.22242 0.91491 1.03094 1.04896 1.21881 0.96394 0.93703 0.84393 1.22298 1.01866 0.92675 1.05738 1.49750 1.46742 1.07147 1.09167 1.22701 0.90825 0.99580 0.84357 1.31549 1.31614 1.01856 1.27649 0.99606 0.70400 0.72010 0.73070 1.93494 1.86003 1.41440 1.76233 1.93500 1.69712 1.53819 1.80461 1.58420 1.22557 1.14697 1.88801 1.21801 0.85535 0.91634 1.01094 1.22968 0.95136 0.97402 1.00997 1.19822 0.90180 0.91862 0.78619 1.86085 1.35449 1.95091 1.22912 1.21778 0.93361 1.06751 1.37749 0.92166 1.25583 0.98677 0.97942 0.94308 1.69805 1.12215 1.31583 1.41208 0.85603 0.77866 0.79679 0.78703 1.20527 1.20969 1.19500 1.22024 0.94945 0.80994 1.00428 1.23792 0.94771 0.98374 0.89508 1.77292 1.21655 0.94224 1.20278 0.92731 0.91601 0.87203 0.87158 0.90675 0.86689 0.92734 0.77459 0.91732 0.90757 0.91298 0.92286 0.77701 0.92287 0.90398 0.91275 0.77335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.02 9.52 71.98 0.69 -1.33 16 2 C 0.14 2.31 3.93 44.99 0.18 2.49 16 3 C -0.17 -2.33 8.84 71.98 0.64 -1.69 16 4 N -0.35 -8.96 3.53 -327.48 -1.15 -10.11 16 5 C 0.18 4.90 10.33 83.54 0.86 5.76 16 6 C -0.83 -25.47 6.17 21.99 0.14 -25.33 16 7 S 2.76 93.72 6.08 -56.49 -0.34 93.37 16 8 O -0.98 -36.06 17.45 -128.00 -2.23 -38.30 16 9 O -0.98 -36.24 17.43 -128.00 -2.23 -38.47 16 10 N -1.01 -36.94 3.70 -506.00 -1.87 -38.81 16 11 C 0.12 4.54 6.99 86.73 0.61 5.15 16 12 C -0.13 -5.36 5.37 31.78 0.17 -5.19 16 13 C 0.24 10.89 0.87 -10.07 -0.01 10.88 16 14 O -0.59 -28.28 13.17 -148.98 -1.96 -30.24 16 15 C -0.56 -28.07 8.27 25.60 0.21 -27.85 16 16 H 0.06 3.00 7.79 -2.91 -0.02 2.98 16 17 C 0.04 1.79 5.29 84.65 0.45 2.24 16 18 N -0.91 -45.95 10.76 21.45 0.23 -45.71 16 19 Si 0.96 40.28 29.54 68.60 2.03 42.30 16 20 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 23 C 0.14 5.72 6.17 86.93 0.54 6.25 16 24 C 0.12 3.72 11.82 85.23 1.01 4.73 16 25 N -0.32 -9.45 12.58 -57.03 -0.72 -10.17 16 26 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.11 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.07 0.97 7.16 -2.39 -0.02 0.95 16 31 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.21 4.49 7.26 -2.91 -0.02 4.47 16 34 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.44 16 36 H 0.07 3.12 7.55 -2.39 -0.02 3.10 16 37 H 0.06 2.57 8.04 -2.38 -0.02 2.55 16 38 H 0.37 18.55 7.56 -74.06 -0.56 17.99 16 39 H 0.27 13.02 8.31 -92.71 -0.77 12.25 16 40 H 0.08 3.08 8.04 -2.38 -0.02 3.06 16 41 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 42 H 0.21 5.22 8.06 -2.91 -0.02 5.20 16 Total: -1.00 -64.53 362.14 -2.31 -66.84 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: 0.47 Total: 33.19 kcal Atomic # 6 Polarization: -29.37 SS G_CDS: 5.47 Total: -23.91 kcal Atomic # 7 Polarization: -101.29 SS G_CDS: -3.51 Total: -104.81 kcal Atomic # 8 Polarization: -100.58 SS G_CDS: -6.43 Total: -107.00 kcal Atomic # 14 Polarization: 40.28 SS G_CDS: 2.03 Total: 42.30 kcal Atomic # 16 Polarization: 93.72 SS G_CDS: -0.34 Total: 93.37 kcal Total: -64.53 -2.31 -66.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592074064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.144 kcal (2) G-P(sol) polarization free energy of solvation -64.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds