Wall clock time and date at job start Tue Mar 31 2020 07:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53000 * 109.47130 * 2 1 4 4 N 1.46504 * 109.46935 * 119.99969 * 2 1 3 5 5 C 1.35046 * 126.39446 * 299.99880 * 4 2 1 6 6 N 1.30499 * 108.69457 * 180.02562 * 5 4 2 7 7 C 1.34128 * 109.26095 * 0.02562 * 6 5 4 8 8 S 1.76200 * 125.99325 * 180.26532 * 7 6 5 9 9 O 1.42101 * 106.40099 * 23.22582 * 8 7 6 10 10 O 1.42095 * 106.40483 * 156.14962 * 8 7 6 11 11 N 1.65606 * 107.21839 * 269.69077 * 8 7 6 12 12 C 1.47021 * 125.64288 * 269.68986 * 11 8 7 13 13 C 1.54336 * 107.26185 * 178.84756 * 12 11 8 14 14 C 1.55155 * 103.02161 * 338.14294 * 13 12 11 15 15 O 1.42905 * 111.00357 * 277.22956 * 14 13 12 16 16 C 1.50704 * 111.00554 * 153.38104 * 14 13 12 17 17 H 1.07999 * 119.99917 * 247.80361 * 16 14 13 18 18 C 1.37881 * 119.99890 * 67.79885 * 16 14 13 19 19 N 1.31514 * 120.00006 * 0.02562 * 18 16 14 20 20 Si 1.86804 * 119.99672 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46954 * 60.00574 * 20 18 16 22 22 H 1.48494 * 109.46797 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46913 * 300.00300 * 20 18 16 24 24 C 1.47419 * 125.65080 * 89.99641 * 11 8 7 25 25 C 1.34675 * 108.01655 * 0.02562 * 7 6 5 26 26 H 1.08999 * 109.46805 * 299.99873 * 1 2 3 27 27 H 1.08999 * 109.46923 * 60.00314 * 1 2 3 28 28 H 1.08997 * 109.46878 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.47004 * 239.99754 * 2 1 3 30 30 H 1.09006 * 109.46893 * 59.99762 * 3 2 1 31 31 H 1.09000 * 109.47146 * 179.97438 * 3 2 1 32 32 H 1.09003 * 109.47211 * 300.00113 * 3 2 1 33 33 H 1.08000 * 125.65569 * 359.97438 * 5 4 2 34 34 H 1.08993 * 109.88652 * 298.39437 * 12 11 8 35 35 H 1.09001 * 109.88499 * 59.56162 * 12 11 8 36 36 H 1.09003 * 110.85279 * 219.67080 * 13 12 11 37 37 H 1.09006 * 110.66578 * 96.52199 * 13 12 11 38 38 H 0.96698 * 113.99586 * 292.19634 * 15 14 13 39 39 H 0.97000 * 119.99253 * 179.97438 * 19 18 16 40 40 H 1.09006 * 110.36735 * 322.92866 * 24 11 8 41 41 H 1.08995 * 110.36516 * 85.24970 * 24 11 8 42 42 H 1.07999 * 126.58848 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.7730 -0.3436 2.4781 6 7 2.3749 -1.1939 3.2641 7 6 3.0198 -2.1045 2.5199 8 16 3.9693 -3.4570 3.1313 9 8 3.4918 -3.7219 4.4432 10 8 3.9879 -4.4333 2.0991 11 7 5.5285 -2.9249 3.2998 12 6 6.5740 -2.9955 2.2686 13 6 7.8474 -2.3574 2.8631 14 6 7.2907 -1.4597 3.9995 15 8 6.8423 -0.2034 3.4867 16 6 8.3181 -1.2620 5.0842 17 1 8.1607 -1.6927 6.0620 18 6 9.4591 -0.5315 4.8282 19 7 9.6506 -0.0066 3.6376 20 14 10.7329 -0.2872 6.1726 21 1 11.2450 -1.6089 6.6152 22 1 11.8567 0.5290 5.6471 23 1 10.1092 0.4131 7.3240 24 6 6.0996 -2.3078 4.5107 25 6 2.8101 -1.8068 1.2233 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5138 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 3.1301 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.1781 0.4985 2.7995 34 1 6.7662 -4.0358 2.0061 35 1 6.2611 -2.4397 1.3847 36 1 8.3656 -1.7566 2.1156 37 1 8.5094 -3.1238 3.2663 38 1 7.5530 0.3622 3.1550 39 1 10.4531 0.5076 3.4577 40 1 5.3607 -1.6702 4.9962 41 1 6.4494 -3.0768 5.1994 42 1 3.1920 -2.3461 0.3690 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592078370.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:05:34 Heat of formation + Delta-G solvation = -60.084293 kcal Electronic energy + Delta-G solvation = -27207.635242 eV Core-core repulsion = 23315.954444 eV Total energy + Delta-G solvation = -3891.680798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23027 -37.94516 -36.74412 -36.34570 -35.38335 -34.20218 -32.07851 -31.18573 -29.65788 -29.16265 -28.18567 -27.80240 -24.79149 -23.46452 -22.38419 -21.35994 -20.65238 -19.70157 -18.37252 -17.73639 -17.22392 -16.83406 -16.23083 -15.54730 -15.26597 -14.93211 -14.83380 -14.50122 -14.11537 -14.07236 -14.00743 -13.51206 -13.24992 -12.89069 -12.78775 -12.72421 -12.33209 -11.91296 -11.81273 -11.70205 -11.68793 -11.65639 -11.59312 -11.27506 -11.19782 -10.94463 -10.70587 -10.51502 -10.38825 -10.03361 -9.95745 -9.90173 -9.34968 -8.90605 -8.63841 -8.28100 -8.11732 -6.25049 -4.31948 0.85024 1.69375 2.48516 2.75354 3.25055 3.29300 3.33233 3.60819 4.06223 4.23512 4.29644 4.39555 4.44013 4.52728 4.59047 4.88882 5.01171 5.02288 5.12286 5.22057 5.26517 5.36385 5.51328 5.52448 5.68035 5.93400 5.96867 6.03928 6.11857 6.26194 6.28646 6.50453 6.72673 6.91143 6.97962 7.02056 7.15284 7.40151 7.42445 7.79232 7.83071 8.07788 8.70185 9.36742 9.54028 10.82548 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015495 B = 0.003979 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.627446 B = 7035.950067 C = 8010.362703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.122 3.878 3 C -0.165 4.165 4 N -0.450 5.450 5 C 0.184 3.816 6 N -0.408 5.408 7 C -0.551 4.551 8 S 2.739 3.261 9 O -0.949 6.949 10 O -0.967 6.967 11 N -0.999 5.999 12 C 0.124 3.876 13 C -0.135 4.135 14 C 0.251 3.749 15 O -0.584 6.584 16 C -0.534 4.534 17 H 0.066 0.934 18 C 0.072 3.928 19 N -0.900 5.900 20 Si 0.903 3.097 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C 0.137 3.863 25 C 0.065 3.935 26 H 0.067 0.933 27 H 0.079 0.921 28 H 0.065 0.935 29 H 0.104 0.896 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.209 0.791 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.383 0.617 39 H 0.268 0.732 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.883 1.688 -10.982 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.019 3.981 3 C -0.223 4.223 4 N -0.131 5.131 5 C -0.102 4.102 6 N -0.124 5.124 7 C -0.761 4.761 8 S 2.826 3.174 9 O -0.939 6.939 10 O -0.957 6.957 11 N -0.839 5.839 12 C -0.002 4.002 13 C -0.175 4.175 14 C 0.210 3.790 15 O -0.394 6.394 16 C -0.573 4.573 17 H 0.084 0.916 18 C -0.130 4.130 19 N -0.540 5.540 20 Si 0.731 3.269 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.200 1.200 24 C 0.013 3.987 25 C -0.076 4.076 26 H 0.086 0.914 27 H 0.098 0.902 28 H 0.084 0.916 29 H 0.122 0.878 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.098 0.902 33 H 0.225 0.775 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.235 0.765 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -14.841 0.814 -9.999 17.914 hybrid contribution 1.166 1.301 -0.807 1.924 sum -13.675 2.116 -10.806 17.557 Atomic orbital electron populations 1.22193 0.92865 1.03434 1.03647 1.21615 0.95722 0.94482 0.86250 1.22200 1.02853 0.93679 1.03553 1.46038 1.37233 1.21621 1.08237 1.25145 1.04019 1.02128 0.78909 1.70339 1.08365 1.02101 1.31627 1.33672 1.21332 1.22284 0.98860 1.00604 0.71177 0.72491 0.73130 1.93542 1.79548 1.83298 1.37490 1.93540 1.86890 1.55370 1.59923 1.58410 1.24560 1.77884 1.23083 1.21790 0.89138 0.99525 0.89698 1.23182 0.94114 0.99721 1.00482 1.19593 0.88318 0.81333 0.89775 1.86097 1.39524 1.30416 1.83334 1.21519 1.03550 1.33823 0.98368 0.91584 1.24985 0.97782 0.94508 0.95744 1.69563 1.28414 1.35311 1.20694 0.86470 0.80330 0.78359 0.81766 1.20024 1.21240 1.20021 1.22162 0.96475 0.95283 0.84829 1.22644 0.96065 0.89936 0.98965 0.91379 0.90171 0.91573 0.87816 0.91358 0.91130 0.90226 0.77499 0.92384 0.93160 0.90198 0.91374 0.76530 0.92167 0.91114 0.90725 0.79398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.24 37.16 0.34 -0.56 16 2 C 0.12 0.89 3.59 -67.92 -0.24 0.64 16 3 C -0.17 -1.09 9.24 37.16 0.34 -0.75 16 4 N -0.45 -5.27 2.62 -111.46 -0.29 -5.56 16 5 C 0.18 2.48 11.55 -90.37 -1.04 1.44 16 6 N -0.41 -7.41 11.25 -13.86 -0.16 -7.57 16 7 C -0.55 -9.77 7.13 -17.81 -0.13 -9.90 16 8 S 2.74 52.80 6.09 -107.50 -0.66 52.15 16 9 O -0.95 -20.90 17.60 -57.17 -1.01 -21.90 16 10 O -0.97 -18.65 17.42 -57.17 -1.00 -19.64 16 11 N -1.00 -20.18 3.70 -111.42 -0.41 -20.60 16 12 C 0.12 2.36 6.99 -3.06 -0.02 2.34 16 13 C -0.14 -2.95 5.64 -24.89 -0.14 -3.09 16 14 C 0.25 6.11 0.89 -89.62 -0.08 6.03 16 15 O -0.58 -14.91 13.18 -35.23 -0.46 -15.37 16 16 C -0.53 -13.93 8.25 -34.44 -0.28 -14.22 16 17 H 0.07 1.70 7.77 -52.49 -0.41 1.30 16 18 C 0.07 1.84 5.30 -17.82 -0.09 1.75 16 19 N -0.90 -23.17 10.79 55.43 0.60 -22.57 16 20 Si 0.90 20.24 29.54 -169.99 -5.02 15.22 16 21 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.14 3.07 6.16 -2.54 -0.02 3.05 16 25 C 0.06 0.92 11.28 -16.56 -0.19 0.73 16 26 H 0.07 0.37 7.95 -51.93 -0.41 -0.04 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.10 0.61 8.08 -51.93 -0.42 0.19 16 30 H 0.07 0.45 7.95 -51.93 -0.41 0.04 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.21 1.95 8.06 -52.49 -0.42 1.53 16 34 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.81 7.85 -51.93 -0.41 1.40 16 37 H 0.07 1.48 8.03 -51.93 -0.42 1.07 16 38 H 0.38 9.90 6.93 45.56 0.32 10.22 16 39 H 0.27 6.64 8.31 -40.82 -0.34 6.31 16 40 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.07 1.60 8.01 -51.93 -0.42 1.19 16 42 H 0.19 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 362.74 15.07 5.47 5.47 Total: -1.00 -33.34 362.74 -10.01 -43.34 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: -5.52 Total: 9.57 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -1.55 Total: -12.54 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -0.26 Total: -56.29 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: -2.47 Total: -56.92 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 52.80 SS G_CDS: -0.66 Total: 52.15 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.34 -10.01 -43.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592078370.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.741 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds