Wall clock time and date at job start Tue Mar 31 2020 05:59:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39689 * 120.11197 * 225.88529 * 3 2 1 5 5 C 1.37978 * 119.99890 * 180.02562 * 4 3 2 6 6 C 1.38245 * 120.23631 * 359.97356 * 5 4 3 7 7 C 1.39020 * 120.22784 * 0.02869 * 6 5 4 8 8 N 1.39748 * 120.00080 * 179.97438 * 7 6 5 9 9 C 1.34773 * 120.00019 * 146.70871 * 8 7 6 10 10 O 1.21377 * 119.99945 * 354.71926 * 9 8 7 11 11 C 1.49360 * 119.99763 * 174.72618 * 9 8 7 12 12 O 1.21360 * 120.00237 * 359.97438 * 11 9 8 13 13 N 1.34782 * 119.99646 * 180.02562 * 11 9 8 14 14 C 1.47421 * 125.64994 * 0.02562 * 13 11 9 15 15 C 1.54904 * 104.92916 * 155.79925 * 14 13 11 16 16 C 1.55446 * 101.45129 * 37.00486 * 15 14 13 17 17 O 1.42900 * 110.70507 * 82.88989 * 16 15 14 18 18 C 1.50704 * 110.86204 * 206.07329 * 16 15 14 19 19 H 1.08000 * 119.99352 * 355.08965 * 18 16 15 20 20 C 1.37873 * 119.99639 * 175.08901 * 18 16 15 21 21 N 1.31511 * 120.00653 * 359.97438 * 20 18 16 22 22 Si 1.86805 * 119.99544 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47407 * 89.99784 * 22 20 18 24 24 H 1.48501 * 109.47195 * 210.00096 * 22 20 18 25 25 H 1.48500 * 109.47140 * 329.99718 * 22 20 18 26 26 C 1.47024 * 125.64740 * 179.97438 * 13 11 9 27 27 C 1.38682 * 119.99388 * 0.24638 * 7 6 5 28 28 H 1.08000 * 120.00013 * 359.97438 * 4 3 2 29 29 H 1.07999 * 119.88271 * 180.02562 * 5 4 3 30 30 H 1.08000 * 119.88497 * 180.02562 * 6 5 4 31 31 H 0.97007 * 119.99924 * 326.71021 * 8 7 6 32 32 H 1.09004 * 110.36670 * 274.69466 * 14 13 11 33 33 H 1.09008 * 110.36780 * 36.90585 * 14 13 11 34 34 H 1.08996 * 111.00699 * 155.13735 * 15 14 13 35 35 H 1.09004 * 111.00450 * 278.99002 * 15 14 13 36 36 H 0.96702 * 114.00034 * 184.99957 * 17 16 15 37 37 H 0.97001 * 120.00226 * 179.97438 * 21 20 18 38 38 H 1.09004 * 109.88019 * 300.49651 * 26 13 11 39 39 H 1.09001 * 109.88023 * 61.50195 * 26 13 11 40 40 H 1.07995 * 120.11147 * 179.74886 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2685 0.8421 0.8676 5 6 4.6483 0.8412 0.8652 6 6 5.3424 0.0092 0.0068 7 6 4.6551 -0.8321 -0.8607 8 7 5.3616 -1.6709 -1.7269 9 6 4.8609 -2.8791 -2.0525 10 8 3.8458 -3.2788 -1.5205 11 6 5.5553 -3.7261 -3.0679 12 8 6.5701 -3.3263 -3.6001 13 7 5.0543 -4.9342 -3.3940 14 6 3.8345 -5.5394 -2.8291 15 6 3.3557 -6.5484 -3.9025 16 6 4.7088 -7.1003 -4.4326 17 8 5.1975 -8.1406 -3.5835 18 6 4.5691 -7.5930 -5.8499 19 1 3.5990 -7.6044 -6.3244 20 6 5.6797 -8.0292 -6.5407 21 7 6.8611 -8.0148 -5.9630 22 14 5.5066 -8.6393 -8.2978 23 1 5.6772 -7.5011 -9.2361 24 1 6.5451 -9.6653 -8.5701 25 1 4.1599 -9.2367 -8.4839 26 6 5.6333 -5.8661 -4.3727 27 6 3.2683 -0.8348 -0.8703 28 1 2.7300 1.4940 1.5395 29 1 5.1879 1.4922 1.5370 30 1 6.4224 0.0128 0.0100 31 1 6.2124 -1.3835 -2.0937 32 1 4.0642 -6.0569 -1.8976 33 1 3.0751 -4.7757 -2.6607 34 1 2.7569 -7.3411 -3.4541 35 1 2.8025 -6.0433 -4.6943 36 1 6.0750 -8.4666 -3.8261 37 1 7.6424 -8.3220 -6.4489 38 1 5.6822 -5.3914 -5.3526 39 1 6.6325 -6.1639 -4.0549 40 1 2.7325 -1.4846 -1.5463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592304150.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:00 Heat of formation + Delta-G solvation = -45.680072 kcal Electronic energy + Delta-G solvation = -27092.877800 eV Core-core repulsion = 23066.377665 eV Total energy + Delta-G solvation = -4026.500135 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.16855 -39.70110 -38.46046 -37.37362 -36.75712 -35.24452 -34.24087 -32.30265 -31.71110 -30.34258 -30.17862 -28.02218 -26.12904 -24.50969 -24.38460 -22.93004 -21.75787 -20.05723 -19.71529 -19.30795 -17.45249 -17.25662 -16.88324 -16.71185 -16.16065 -15.86506 -15.43767 -15.34208 -14.75676 -14.42686 -14.39684 -14.27255 -13.94910 -13.44539 -13.18657 -13.10700 -13.01922 -12.97298 -12.73246 -12.51387 -12.21860 -11.98878 -11.77979 -11.59912 -11.20031 -11.11151 -10.87236 -10.79784 -10.64303 -10.54209 -10.24141 -9.48265 -9.39117 -9.25396 -8.74094 -8.61509 -8.41808 -8.15412 -6.35887 -4.44436 0.36088 0.78956 1.56886 2.24151 2.44834 2.64114 3.17175 3.25116 3.28129 3.31777 3.48050 3.56811 3.69770 4.21669 4.41135 4.47248 4.63170 4.66942 4.92312 4.96577 5.04518 5.36818 5.39789 5.72457 5.72873 5.76147 5.82647 5.90087 5.90453 5.97515 6.18780 6.41425 6.44420 6.64438 6.70300 6.74367 6.86863 7.11370 7.21136 7.23685 7.57565 7.65643 7.83341 7.94502 8.21648 8.59700 9.21833 9.30928 10.71961 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.022207 B = 0.002656 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.562072 B =10538.121123 C =11157.511462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C 0.257 3.743 3 C -0.008 4.008 4 C -0.088 4.088 5 C -0.098 4.098 6 C -0.113 4.113 7 C 0.152 3.848 8 N -0.652 5.652 9 C 0.513 3.487 10 O -0.493 6.493 11 C 0.508 3.492 12 O -0.533 6.533 13 N -0.571 5.571 14 C 0.096 3.904 15 C -0.121 4.121 16 C 0.248 3.752 17 O -0.583 6.583 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.070 3.930 21 N -0.895 5.895 22 Si 0.905 3.095 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.272 1.272 26 C 0.100 3.900 27 C -0.075 4.075 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.426 0.574 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.382 0.618 37 H 0.271 0.729 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.619 16.103 11.627 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.089 5.089 2 C -0.059 4.059 3 C -0.012 4.012 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.135 4.135 7 C 0.057 3.943 8 N -0.299 5.299 9 C 0.296 3.704 10 O -0.366 6.366 11 C 0.290 3.710 12 O -0.412 6.412 13 N -0.303 5.303 14 C -0.026 4.026 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.391 6.391 18 C -0.575 4.575 19 H 0.086 0.914 20 C -0.133 4.133 21 N -0.534 5.534 22 Si 0.732 3.268 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.196 1.196 26 C -0.021 4.021 27 C -0.098 4.098 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.265 0.735 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.923 16.040 11.930 20.203 hybrid contribution 1.537 -0.307 -1.428 2.121 sum -1.385 15.733 10.502 18.967 Atomic orbital electron populations 1.81260 1.11994 1.07876 1.07730 1.25607 0.92569 0.93818 0.93915 1.15766 0.84432 1.00563 1.00435 1.21163 0.94414 0.97628 0.97715 1.20883 0.93391 0.98806 0.98624 1.21211 1.00785 0.97012 0.94444 1.17519 0.90809 0.93169 0.92764 1.43237 1.25206 1.15635 1.45847 1.20715 0.85109 0.81679 0.82927 1.90747 1.23805 1.71195 1.50825 1.19242 0.85480 0.82304 0.84023 1.90756 1.24437 1.71678 1.54361 1.48738 1.26622 1.14931 1.39973 1.22686 0.86064 0.96571 0.97283 1.22868 0.98367 0.97365 0.97254 1.19577 0.87420 0.83141 0.89095 1.86134 1.39526 1.55807 1.57659 1.21498 0.94904 1.43894 0.97222 0.91372 1.25079 0.95015 0.94230 0.98966 1.69681 0.98959 1.46674 1.38068 0.86380 0.78143 0.78655 0.83628 1.20401 1.20950 1.19646 1.23305 0.98836 0.89905 0.90034 1.21198 0.92717 0.97513 0.98389 0.84780 0.84300 0.84496 0.73514 0.91098 0.89554 0.90185 0.90387 0.76746 0.91917 0.90702 0.90809 0.83657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.53 18.54 41.84 0.78 -4.76 16 2 C 0.26 2.84 15.33 -22.47 -0.34 2.50 16 3 C -0.01 -0.07 5.73 -106.96 -0.61 -0.69 16 4 C -0.09 -0.56 9.75 -39.13 -0.38 -0.94 16 5 C -0.10 -0.51 10.02 -39.67 -0.40 -0.91 16 6 C -0.11 -0.74 9.95 -39.29 -0.39 -1.13 16 7 C 0.15 1.44 6.27 -83.80 -0.53 0.92 16 8 N -0.65 -7.12 5.32 -10.33 -0.05 -7.18 16 9 C 0.51 7.49 7.59 -11.63 -0.09 7.40 16 10 O -0.49 -7.73 11.47 5.47 0.06 -7.67 16 11 C 0.51 9.16 7.91 -11.63 -0.09 9.07 16 12 O -0.53 -10.53 16.81 5.49 0.09 -10.44 16 13 N -0.57 -11.23 3.33 -171.06 -0.57 -11.80 16 14 C 0.10 1.74 6.05 -2.53 -0.02 1.73 16 15 C -0.12 -2.37 6.26 -24.43 -0.15 -2.52 16 16 C 0.25 5.78 0.85 -89.78 -0.08 5.70 16 17 O -0.58 -14.13 13.08 -35.23 -0.46 -14.59 16 18 C -0.54 -13.56 8.13 -34.44 -0.28 -13.84 16 19 H 0.07 1.70 7.78 -52.49 -0.41 1.29 16 20 C 0.07 1.78 5.28 -17.82 -0.09 1.68 16 21 N -0.90 -22.89 10.96 55.43 0.61 -22.29 16 22 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 23 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 26 C 0.10 2.28 5.23 -3.07 -0.02 2.26 16 27 C -0.08 -0.79 8.36 -38.95 -0.33 -1.11 16 28 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 29 H 0.14 0.34 8.06 -52.49 -0.42 -0.08 16 30 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.43 3.94 8.30 -40.82 -0.34 3.60 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.44 6.15 -51.92 -0.32 1.12 16 34 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.47 8.05 -51.93 -0.42 1.05 16 36 H 0.38 9.42 7.45 45.56 0.34 9.76 16 37 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 38 H 0.07 1.84 7.82 -51.93 -0.41 1.43 16 39 H 0.07 1.81 7.92 -51.93 -0.41 1.40 16 40 H 0.15 1.76 6.43 -52.49 -0.34 1.42 16 LS Contribution 351.73 15.07 5.30 5.30 Total: -1.00 -29.33 351.73 -6.61 -35.94 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -3.55 Total: 12.49 kcal Atomic # 6 Polarization: 13.90 SS G_CDS: -3.79 Total: 10.11 kcal Atomic # 7 Polarization: -46.77 SS G_CDS: 0.76 Total: -46.02 kcal Atomic # 8 Polarization: -32.40 SS G_CDS: -0.31 Total: -32.70 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.33 -6.61 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304150.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.740 kcal (2) G-P(sol) polarization free energy of solvation -29.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds