Wall clock time and date at job start Tue Mar 31 2020 05:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39682 * 120.11692 * 103.23507 * 3 2 1 5 5 C 1.37974 * 120.00369 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.23343 * 359.70463 * 5 4 3 7 7 C 1.39010 * 120.22998 * 0.55048 * 6 5 4 8 8 N 1.39757 * 120.00538 * 179.75116 * 7 6 5 9 9 C 1.34774 * 120.00214 * 146.33098 * 8 7 6 10 10 O 1.21377 * 120.00124 * 354.71877 * 9 8 7 11 11 C 1.49352 * 119.99877 * 174.72202 * 9 8 7 12 12 O 1.21360 * 120.00251 * 359.97438 * 11 9 8 13 13 N 1.34781 * 120.00094 * 179.97438 * 11 9 8 14 14 C 1.47423 * 125.64610 * 359.96250 * 13 11 9 15 15 C 1.54908 * 104.83352 * 204.16084 * 14 13 11 16 16 C 1.55157 * 101.57978 * 322.99129 * 15 14 13 17 17 O 1.42905 * 110.72131 * 277.13786 * 16 15 14 18 18 C 1.50696 * 110.87363 * 153.93448 * 16 15 14 19 19 H 1.08000 * 120.00054 * 2.55343 * 18 16 15 20 20 C 1.37883 * 119.99836 * 182.54232 * 18 16 15 21 21 N 1.31507 * 120.00140 * 0.02562 * 20 18 16 22 22 Si 1.86801 * 119.99514 * 180.02562 * 20 18 16 23 23 H 1.48495 * 109.47293 * 60.00727 * 22 20 18 24 24 H 1.48502 * 109.46648 * 180.02562 * 22 20 18 25 25 H 1.48496 * 109.47367 * 300.00076 * 22 20 18 26 26 C 1.47022 * 125.65082 * 179.97438 * 13 11 9 27 27 C 1.38687 * 119.99529 * 359.47038 * 7 6 5 28 28 H 1.08004 * 119.99570 * 359.97438 * 4 3 2 29 29 H 1.08004 * 119.88257 * 179.97438 * 5 4 3 30 30 H 1.08002 * 119.88993 * 180.29756 * 6 5 4 31 31 H 0.97000 * 119.99688 * 326.32491 * 8 7 6 32 32 H 1.08998 * 110.36954 * 323.00108 * 14 13 11 33 33 H 1.09003 * 110.36599 * 85.32144 * 14 13 11 34 34 H 1.09003 * 111.00703 * 204.92032 * 15 14 13 35 35 H 1.08997 * 111.00672 * 81.05935 * 15 14 13 36 36 H 0.96692 * 114.00630 * 174.97603 * 17 16 15 37 37 H 0.97002 * 119.99813 * 179.97438 * 21 20 18 38 38 H 1.09002 * 109.87844 * 59.49208 * 26 13 11 39 39 H 1.08998 * 109.88213 * 298.32973 * 26 13 11 40 40 H 1.08003 * 120.11772 * 180.23253 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 0.2776 -1.1762 5 6 4.6485 0.2781 -1.1734 6 6 5.3423 0.0112 -0.0079 7 6 4.6548 -0.2709 1.1669 8 7 5.3610 -0.5452 2.3413 9 6 4.8599 -0.1653 3.5333 10 8 3.8446 0.4981 3.5813 11 6 5.5539 -0.5607 4.7954 12 8 6.5688 -1.2244 4.7475 13 7 5.0531 -0.1804 5.9875 14 6 3.8344 0.6240 6.1902 15 6 4.0265 1.2931 7.5741 16 6 4.7378 0.1661 8.3688 17 8 3.7863 -0.7675 8.8837 18 6 5.5747 0.7406 9.4826 19 1 5.5815 1.8061 9.6586 20 6 6.3317 -0.0943 10.2770 21 7 6.3238 -1.3917 10.0625 22 14 7.3686 0.6177 11.6581 23 1 6.4898 1.3292 12.6207 24 1 8.0828 -0.4805 12.3575 25 1 8.3581 1.5704 11.0936 26 6 5.6317 -0.4989 7.3010 27 6 3.2680 -0.2744 1.1749 28 1 2.7305 0.4913 -2.0878 29 1 5.1884 0.4921 -2.0840 30 1 6.4223 0.0178 -0.0109 31 1 6.2119 -1.0091 2.2984 32 1 3.7460 1.3817 5.4116 33 1 2.9533 -0.0176 6.1981 34 1 3.0657 1.5421 8.0245 35 1 4.6605 2.1763 7.4965 36 1 4.1833 -1.5321 9.3226 37 1 6.8566 -1.9790 10.6212 38 1 6.6446 -0.1016 7.3660 39 1 5.6447 -1.5788 7.4483 40 1 2.7318 -0.4895 2.0874 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592304151.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:03 Heat of formation + Delta-G solvation = -45.586143 kcal Electronic energy + Delta-G solvation = -27081.220431 eV Core-core repulsion = 23054.724369 eV Total energy + Delta-G solvation = -4026.496062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.17069 -39.70553 -38.46543 -37.38062 -36.75462 -35.24514 -34.24396 -32.27438 -31.71082 -30.34778 -30.18548 -28.03587 -26.13170 -24.51070 -24.38355 -22.93182 -21.76366 -20.05547 -19.71110 -19.30146 -17.45383 -17.28209 -16.86058 -16.71636 -16.11660 -15.88307 -15.64362 -15.16016 -14.70929 -14.57450 -14.33292 -14.23102 -13.96490 -13.45062 -13.16898 -13.10966 -13.03674 -12.98256 -12.72657 -12.51486 -12.19587 -11.99446 -11.77883 -11.58725 -11.20355 -11.10272 -10.85916 -10.79745 -10.66444 -10.55033 -10.24420 -9.48462 -9.40533 -9.25868 -8.72873 -8.61801 -8.41667 -8.16082 -6.35967 -4.44338 0.36131 0.78804 1.56623 2.24042 2.45050 2.64195 3.18727 3.24465 3.26514 3.31500 3.48109 3.56665 3.69643 4.21542 4.40933 4.47234 4.63189 4.66963 4.92078 4.96546 5.04501 5.37067 5.40367 5.72441 5.74004 5.76696 5.82616 5.90141 5.90439 5.97764 6.18829 6.41318 6.44373 6.64132 6.69668 6.73608 6.86664 7.10554 7.21453 7.23446 7.57296 7.65901 7.82843 7.94379 8.21098 8.59081 9.23228 9.32931 10.72095 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023932 B = 0.002630 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.721302 B =10643.013076 C =11349.186169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C 0.256 3.744 3 C -0.008 4.008 4 C -0.088 4.088 5 C -0.099 4.099 6 C -0.113 4.113 7 C 0.152 3.848 8 N -0.652 5.652 9 C 0.513 3.487 10 O -0.493 6.493 11 C 0.508 3.492 12 O -0.534 6.534 13 N -0.570 5.570 14 C 0.096 3.904 15 C -0.121 4.121 16 C 0.249 3.751 17 O -0.583 6.583 18 C -0.537 4.537 19 H 0.068 0.932 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.905 3.095 23 H -0.274 1.274 24 H -0.285 1.285 25 H -0.275 1.275 26 C 0.098 3.902 27 C -0.075 4.075 28 H 0.134 0.866 29 H 0.139 0.861 30 H 0.137 0.863 31 H 0.426 0.574 32 H 0.087 0.913 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.384 0.616 37 H 0.272 0.728 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 1.858 -19.956 20.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.088 5.088 2 C -0.059 4.059 3 C -0.012 4.012 4 C -0.109 4.109 5 C -0.117 4.117 6 C -0.134 4.134 7 C 0.057 3.943 8 N -0.299 5.299 9 C 0.296 3.704 10 O -0.366 6.366 11 C 0.290 3.710 12 O -0.413 6.413 13 N -0.302 5.302 14 C -0.026 4.026 15 C -0.159 4.159 16 C 0.208 3.792 17 O -0.392 6.392 18 C -0.576 4.576 19 H 0.086 0.914 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.733 3.267 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.200 1.200 26 C -0.023 4.023 27 C -0.098 4.098 28 H 0.152 0.848 29 H 0.157 0.843 30 H 0.155 0.845 31 H 0.265 0.735 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.235 0.765 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -2.270 2.194 -20.065 20.312 hybrid contribution 1.935 -0.398 1.010 2.219 sum -0.335 1.796 -19.055 19.142 Atomic orbital electron populations 1.81261 1.11994 1.08375 1.07210 1.25606 0.92570 0.93899 0.93850 1.15766 0.84437 1.06134 0.94869 1.21162 0.94412 0.98661 0.96663 1.20881 0.93392 0.99427 0.98030 1.21210 1.00792 0.99651 0.91779 1.17521 0.90810 0.99734 0.86232 1.43236 1.25228 1.57806 1.03661 1.20707 0.85120 0.79504 0.85091 1.90747 1.23757 1.35240 1.86834 1.19246 0.85496 0.82703 0.83604 1.90755 1.24470 1.39538 1.86491 1.48729 1.26530 1.49135 1.05836 1.22699 0.86452 0.94667 0.98813 1.22822 1.01658 0.98231 0.93140 1.19510 0.85047 0.85306 0.89325 1.86123 1.37392 1.37929 1.77772 1.21468 1.26766 0.94404 1.14926 0.91410 1.25078 0.95901 0.94893 0.97376 1.69622 1.41235 1.02772 1.39847 0.86427 0.80062 0.78701 0.81546 1.19930 1.21051 1.20003 1.23340 0.99004 1.01470 0.78464 1.21210 0.92734 0.97897 0.97943 0.84781 0.84302 0.84499 0.73518 0.89447 0.91138 0.90183 0.90385 0.76545 0.91824 0.90695 0.90909 0.83618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -5.56 18.54 41.84 0.78 -4.78 16 2 C 0.26 2.86 15.33 -22.47 -0.34 2.51 16 3 C -0.01 -0.07 5.73 -106.96 -0.61 -0.69 16 4 C -0.09 -0.55 9.75 -39.14 -0.38 -0.94 16 5 C -0.10 -0.51 10.02 -39.68 -0.40 -0.91 16 6 C -0.11 -0.73 9.96 -39.30 -0.39 -1.12 16 7 C 0.15 1.44 6.27 -83.79 -0.53 0.91 16 8 N -0.65 -7.10 5.32 -10.33 -0.05 -7.16 16 9 C 0.51 7.47 7.59 -11.63 -0.09 7.38 16 10 O -0.49 -7.72 11.46 5.47 0.06 -7.66 16 11 C 0.51 9.14 7.91 -11.63 -0.09 9.05 16 12 O -0.53 -10.50 16.81 5.49 0.09 -10.41 16 13 N -0.57 -11.20 3.33 -171.06 -0.57 -11.77 16 14 C 0.10 1.73 6.05 -2.53 -0.02 1.72 16 15 C -0.12 -2.37 6.23 -24.58 -0.15 -2.52 16 16 C 0.25 5.80 0.85 -89.94 -0.08 5.72 16 17 O -0.58 -14.26 13.07 -35.23 -0.46 -14.72 16 18 C -0.54 -13.56 8.12 -34.44 -0.28 -13.84 16 19 H 0.07 1.68 7.78 -52.49 -0.41 1.27 16 20 C 0.07 1.79 5.28 -17.82 -0.09 1.69 16 21 N -0.90 -22.95 10.98 55.43 0.61 -22.35 16 22 Si 0.91 19.86 29.54 -169.99 -5.02 14.84 16 23 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.29 -6.24 7.11 56.52 0.40 -5.83 16 25 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 26 C 0.10 2.23 5.37 -3.06 -0.02 2.21 16 27 C -0.08 -0.79 8.36 -38.95 -0.33 -1.11 16 28 H 0.13 0.57 8.06 -52.48 -0.42 0.15 16 29 H 0.14 0.33 8.06 -52.48 -0.42 -0.09 16 30 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.43 3.92 8.30 -40.82 -0.34 3.58 16 32 H 0.09 1.46 6.16 -51.93 -0.32 1.14 16 33 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 35 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.38 9.57 7.26 45.56 0.33 9.90 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.07 1.83 7.81 -51.93 -0.41 1.42 16 39 H 0.07 1.79 7.98 -51.93 -0.41 1.37 16 40 H 0.15 1.78 6.42 -52.48 -0.34 1.45 16 LS Contribution 351.69 15.07 5.30 5.30 Total: -1.00 -29.32 351.69 -6.62 -35.94 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -3.56 Total: 12.70 kcal Atomic # 6 Polarization: 13.86 SS G_CDS: -3.79 Total: 10.06 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.76 Total: -46.05 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.31 Total: -32.78 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.84 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.32 -6.62 -35.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304151.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.647 kcal (2) G-P(sol) polarization free energy of solvation -29.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds