Wall clock time and date at job start Tue Mar 31 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39779 * 120.07806 * 37.13251 * 3 2 1 5 5 C 1.37682 * 119.92450 * 180.02562 * 4 3 2 6 6 C 1.39157 * 120.07817 * 359.97438 * 5 4 3 7 7 N 1.39354 * 119.92717 * 179.97438 * 6 5 4 8 8 C 1.34780 * 120.00063 * 146.55249 * 7 6 5 9 9 O 1.21366 * 119.99698 * 354.71965 * 8 7 6 10 10 C 1.49350 * 119.99814 * 174.72285 * 8 7 6 11 11 O 1.21357 * 120.00676 * 359.97438 * 10 8 7 12 12 N 1.34780 * 119.99814 * 179.97438 * 10 8 7 13 13 C 1.47029 * 125.64783 * 0.02562 * 12 10 8 14 14 C 1.54314 * 107.27046 * 181.04243 * 13 12 10 15 15 C 1.55155 * 102.94550 * 22.19075 * 14 13 12 16 16 O 1.42904 * 111.00422 * 82.57614 * 15 14 13 17 17 C 1.50704 * 111.00767 * 206.42185 * 15 14 13 18 18 H 1.08007 * 119.99613 * 353.65489 * 17 15 14 19 19 C 1.37874 * 119.99956 * 173.64611 * 17 15 14 20 20 N 1.31507 * 120.00151 * 0.02562 * 19 17 15 21 21 Si 1.86806 * 119.99706 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47139 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46825 * 120.00340 * 21 19 17 24 24 H 1.48501 * 109.47248 * 240.00468 * 21 19 17 25 25 C 1.47419 * 125.64947 * 180.02562 * 12 10 8 26 26 C 1.39152 * 120.14504 * 0.26263 * 6 5 4 27 27 C 1.37682 * 120.07830 * 359.48252 * 26 6 5 28 28 H 1.07998 * 120.03859 * 0.03762 * 4 3 2 29 29 H 1.07998 * 119.96048 * 179.97438 * 5 4 3 30 30 H 0.97000 * 120.00039 * 326.54777 * 7 6 5 31 31 H 1.09006 * 109.88060 * 300.45742 * 13 12 10 32 32 H 1.09001 * 109.88051 * 61.62072 * 13 12 10 33 33 H 1.09003 * 110.72069 * 140.55816 * 14 13 12 34 34 H 1.09004 * 110.72332 * 263.64919 * 14 13 12 35 35 H 0.96702 * 113.99833 * 186.35363 * 16 15 14 36 36 H 0.97003 * 120.00298 * 179.97438 * 20 19 17 37 37 H 1.08999 * 110.36767 * 274.72731 * 25 12 10 38 38 H 1.09002 * 110.37032 * 37.05012 * 25 12 10 39 39 H 1.08005 * 119.96547 * 179.74341 * 26 6 5 40 40 H 1.08007 * 120.04412 * 180.23600 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2689 -0.9634 -0.7302 5 6 4.6457 -0.9601 -0.7275 6 6 5.3395 0.0017 0.0005 7 7 6.7330 0.0017 0.0014 8 6 7.4069 1.1666 0.0764 9 8 6.8039 2.2194 0.0464 10 6 8.8956 1.1617 0.1962 11 8 9.4985 0.1089 0.2266 12 7 9.5695 2.3265 0.2706 13 6 8.9676 3.6678 0.2458 14 6 10.1213 4.6892 0.3293 15 6 11.3429 3.8756 -0.1736 16 8 11.3925 3.8559 -1.6016 17 6 12.6264 4.4169 0.4017 18 1 12.6154 5.3251 0.9862 19 6 13.8144 3.7526 0.1822 20 7 13.8277 2.6470 -0.5297 21 14 15.4052 4.4232 0.8959 22 1 15.1218 5.6696 1.6518 23 1 16.0014 3.4155 1.8094 24 1 16.3567 4.7173 -0.2056 25 6 11.0321 2.4669 0.3903 26 6 4.6448 0.9598 0.7325 27 6 3.2680 0.9656 0.7300 28 1 2.7312 -1.7098 -1.2959 29 1 5.1879 -1.7049 -1.2911 30 1 7.2181 -0.8366 -0.0518 31 1 8.4142 3.8086 -0.6827 32 1 8.3010 3.7907 1.0994 33 1 9.9301 5.5411 -0.3233 34 1 10.2709 5.0189 1.3575 35 1 12.0806 3.2807 -1.9633 36 1 14.6636 2.1798 -0.6845 37 1 11.3352 2.4014 1.4353 38 1 11.5362 1.7020 -0.2004 39 1 5.1862 1.7024 1.2998 40 1 2.7293 1.7118 1.2953 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592304668.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:07 Heat of formation + Delta-G solvation = -47.668019 kcal Electronic energy + Delta-G solvation = -26921.088487 eV Core-core repulsion = 22894.502148 eV Total energy + Delta-G solvation = -4026.586339 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.17811 -39.69797 -38.50996 -37.36784 -36.78320 -35.20483 -34.23524 -32.32563 -31.53717 -30.54120 -30.34353 -28.03504 -26.28017 -24.81240 -23.40425 -23.21905 -21.80473 -19.97771 -19.67734 -19.30369 -18.14125 -17.34772 -17.25376 -16.42042 -16.06835 -15.48013 -15.25441 -14.96326 -14.76388 -14.53612 -14.40095 -14.23613 -13.96906 -13.88111 -13.24479 -13.16512 -13.04122 -12.94998 -12.73570 -12.59816 -12.41261 -11.77042 -11.67965 -11.60127 -11.26918 -11.13020 -10.89865 -10.72557 -10.65294 -10.51812 -10.28683 -9.53177 -9.47046 -9.33009 -8.78903 -8.57184 -8.50062 -8.05018 -6.37151 -4.46643 0.29368 0.95071 1.50519 2.27685 2.37280 2.63242 3.14545 3.24098 3.27328 3.31866 3.54456 3.56926 3.63617 4.19515 4.36191 4.46039 4.48598 4.82085 4.90549 5.03064 5.10003 5.36956 5.52052 5.60607 5.67990 5.71765 5.82272 5.92226 5.92363 5.96474 6.17010 6.40680 6.44610 6.63011 6.63832 6.72980 6.86048 7.08293 7.18695 7.21354 7.54019 7.65168 7.83844 7.91520 8.20957 8.58114 9.20209 9.29017 10.70121 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035225 B = 0.002328 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.704398 B =12026.462422 C =12437.142531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.260 3.740 3 C -0.055 4.055 4 C -0.046 4.046 5 C -0.147 4.147 6 C 0.186 3.814 7 N -0.653 5.653 8 C 0.513 3.487 9 O -0.489 6.489 10 C 0.509 3.491 11 O -0.533 6.533 12 N -0.570 5.570 13 C 0.108 3.892 14 C -0.121 4.121 15 C 0.248 3.752 16 O -0.581 6.581 17 C -0.536 4.536 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.281 1.281 25 C 0.091 3.909 26 C -0.126 4.126 27 C -0.045 4.045 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.426 0.574 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.381 0.619 36 H 0.270 0.730 37 H 0.070 0.930 38 H 0.092 0.908 39 H 0.146 0.854 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.524 -6.210 1.589 15.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.055 4.055 3 C -0.059 4.059 4 C -0.067 4.067 5 C -0.167 4.167 6 C 0.089 3.911 7 N -0.300 5.300 8 C 0.295 3.705 9 O -0.361 6.361 10 C 0.290 3.710 11 O -0.412 6.412 12 N -0.302 5.302 13 C -0.014 4.014 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.389 6.389 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.195 1.195 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.029 4.029 26 C -0.146 4.146 27 C -0.066 4.066 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.265 0.735 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.231 0.769 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.111 0.889 39 H 0.164 0.836 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.708 -5.735 1.604 17.737 hybrid contribution 2.062 -0.590 0.243 2.159 sum -14.646 -6.325 1.847 16.060 Atomic orbital electron populations 1.81260 1.12121 1.08072 1.08656 1.25686 0.92604 0.93638 0.93562 1.16012 0.84316 1.00485 1.05097 1.20927 0.93293 0.96419 0.96099 1.20866 0.93915 1.01158 1.00791 1.18005 0.82527 0.96206 0.94337 1.43253 1.04501 1.10824 1.71406 1.20721 0.89599 0.83600 0.76530 1.90766 1.69977 1.30446 1.44898 1.19238 0.86556 0.84344 0.80815 1.90760 1.69145 1.30095 1.51181 1.48707 1.10532 1.05102 1.65811 1.22210 0.96132 0.81323 1.01765 1.22709 0.94155 0.97449 1.01623 1.19648 0.91961 0.88071 0.79558 1.86136 1.59962 1.71303 1.21545 1.21494 0.91257 1.10635 1.34076 0.91266 1.25091 0.99711 0.94320 0.94154 1.69705 1.28029 1.16684 1.38799 0.86329 0.82465 0.79096 0.78919 1.19528 1.20761 1.20717 1.23561 0.74528 1.02911 1.01908 1.21138 0.93664 1.00162 0.99672 1.21044 0.93480 0.96081 0.96018 0.84476 0.84199 0.73497 0.90982 0.91569 0.90423 0.90231 0.76880 0.91959 0.91168 0.88925 0.83584 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.04 18.54 41.83 0.78 -4.27 16 2 C 0.26 2.46 15.33 -22.48 -0.34 2.12 16 3 C -0.05 -0.43 5.74 -106.82 -0.61 -1.04 16 4 C -0.05 -0.30 9.75 -39.21 -0.38 -0.68 16 5 C -0.15 -1.02 9.94 -39.44 -0.39 -1.41 16 6 C 0.19 1.73 6.27 -83.76 -0.53 1.21 16 7 N -0.65 -7.02 5.30 -10.28 -0.05 -7.08 16 8 C 0.51 7.31 7.58 -11.63 -0.09 7.22 16 9 O -0.49 -7.39 11.81 5.48 0.06 -7.33 16 10 C 0.51 9.03 7.91 -11.63 -0.09 8.93 16 11 O -0.53 -10.42 16.74 5.49 0.09 -10.32 16 12 N -0.57 -10.93 3.33 -171.08 -0.57 -11.49 16 13 C 0.11 1.88 5.49 -3.07 -0.02 1.87 16 14 C -0.12 -2.30 6.13 -24.90 -0.15 -2.45 16 15 C 0.25 5.66 0.87 -89.63 -0.08 5.58 16 16 O -0.58 -14.04 13.16 -35.23 -0.46 -14.51 16 17 C -0.54 -13.22 8.27 -34.44 -0.28 -13.51 16 18 H 0.07 1.68 7.79 -52.48 -0.41 1.27 16 19 C 0.07 1.75 5.29 -17.82 -0.09 1.66 16 20 N -0.89 -22.57 10.69 55.43 0.59 -21.98 16 21 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 22 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 C 0.09 2.02 5.38 -2.54 -0.01 2.01 16 26 C -0.13 -1.18 8.63 -39.45 -0.34 -1.53 16 27 C -0.05 -0.35 9.75 -39.21 -0.38 -0.74 16 28 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.43 3.93 8.29 -40.82 -0.34 3.59 16 31 H 0.07 1.26 7.58 -51.93 -0.39 0.87 16 32 H 0.07 1.03 7.69 -51.93 -0.40 0.63 16 33 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 35 H 0.38 9.41 7.57 45.56 0.34 9.75 16 36 H 0.27 6.56 8.31 -40.82 -0.34 6.22 16 37 H 0.07 1.59 8.03 -51.93 -0.42 1.17 16 38 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 39 H 0.15 1.52 6.42 -52.48 -0.34 1.18 16 40 H 0.14 0.85 8.06 -52.48 -0.42 0.42 16 LS Contribution 352.10 15.07 5.31 5.31 Total: -1.00 -28.65 352.10 -6.65 -35.30 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -3.57 Total: 12.67 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.80 Total: 9.24 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: 0.74 Total: -44.82 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -0.31 Total: -32.16 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.65 -6.65 -35.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304668.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.368 kcal (2) G-P(sol) polarization free energy of solvation -28.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds