Wall clock time and date at job start Tue Mar 31 2020 05:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39781 * 120.07129 * 166.38868 * 3 2 1 5 5 C 1.37683 * 119.92285 * 179.74177 * 4 3 2 6 6 C 1.39159 * 120.07270 * 0.52979 * 5 4 3 7 7 N 1.39359 * 119.92086 * 179.70104 * 6 5 4 8 8 C 1.34778 * 119.99825 * 213.57921 * 7 6 5 9 9 O 1.21376 * 119.99758 * 5.28686 * 8 7 6 10 10 C 1.49358 * 120.00515 * 185.27992 * 8 7 6 11 11 O 1.21362 * 119.99562 * 0.02562 * 10 8 7 12 12 N 1.34772 * 120.00126 * 180.02562 * 10 8 7 13 13 C 1.47014 * 125.65142 * 359.69436 * 12 10 8 14 14 C 1.54338 * 107.26693 * 178.85098 * 13 12 10 15 15 C 1.55156 * 103.01927 * 338.13882 * 14 13 12 16 16 O 1.42905 * 111.00295 * 277.23429 * 15 14 13 17 17 C 1.50697 * 111.03834 * 153.39896 * 15 14 13 18 18 H 1.08005 * 119.99655 * 6.32866 * 17 15 14 19 19 C 1.37873 * 120.00422 * 186.33406 * 17 15 14 20 20 N 1.31519 * 119.99842 * 359.97438 * 19 17 15 21 21 Si 1.86800 * 120.00371 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47135 * 89.99740 * 21 19 17 23 23 H 1.48500 * 109.47035 * 209.99780 * 21 19 17 24 24 H 1.48497 * 109.46760 * 329.99553 * 21 19 17 25 25 C 1.47427 * 125.64343 * 180.02562 * 12 10 8 26 26 C 1.39150 * 120.15030 * 359.72175 * 6 5 4 27 27 C 1.37686 * 120.07638 * 0.02562 * 26 6 5 28 28 H 1.07998 * 120.03822 * 359.96530 * 4 3 2 29 29 H 1.08002 * 119.96683 * 180.27662 * 5 4 3 30 30 H 0.96999 * 120.00593 * 33.58665 * 7 6 5 31 31 H 1.08997 * 109.88209 * 298.39666 * 13 12 10 32 32 H 1.09001 * 109.88547 * 59.55946 * 13 12 10 33 33 H 1.09004 * 110.84457 * 219.67190 * 14 13 12 34 34 H 1.08998 * 110.51504 * 96.45285 * 14 13 12 35 35 H 0.96698 * 113.99502 * 173.64882 * 16 15 14 36 36 H 0.96997 * 120.00285 * 180.02562 * 20 19 17 37 37 H 1.09000 * 110.36926 * 322.93277 * 25 12 10 38 38 H 1.08998 * 110.36777 * 85.14892 * 25 12 10 39 39 H 1.08002 * 119.96248 * 180.02562 * 26 6 5 40 40 H 1.07991 * 120.03700 * 180.02562 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 1.1766 -0.2847 5 6 4.6447 1.1751 -0.2786 6 6 5.3395 0.0019 -0.0003 7 7 6.7331 0.0024 -0.0012 8 6 7.4071 -1.0926 -0.4050 9 8 6.8041 -2.0436 -0.8580 10 6 8.8960 -1.1359 -0.2952 11 8 9.4989 -0.1851 0.1581 12 7 9.5700 -2.2307 -0.6995 13 6 8.9678 -3.4496 -1.2590 14 6 10.1222 -4.4149 -1.6023 15 6 11.3431 -3.4666 -1.7344 16 8 11.3908 -2.8708 -3.0324 17 6 12.6277 -4.1930 -1.4292 18 1 12.6182 -5.2600 -1.2621 19 6 13.8152 -3.4955 -1.3632 20 7 13.8269 -2.1963 -1.5671 21 14 15.4075 -4.3958 -0.9842 22 1 16.0326 -4.8510 -2.2519 23 1 16.3369 -3.4803 -0.2748 24 1 15.1186 -5.5717 -0.1245 25 6 11.0328 -2.4070 -0.6475 26 6 4.6459 -1.1718 0.2783 27 6 3.2690 -1.1760 0.2790 28 1 2.7293 2.0863 -0.5056 29 1 5.1862 2.0844 -0.4941 30 1 7.2180 0.7908 0.2889 31 1 8.3057 -3.9071 -0.5239 32 1 8.4095 -3.2061 -2.1629 33 1 9.9302 -4.9299 -2.5436 34 1 10.2750 -5.1302 -0.7942 35 1 12.0784 -2.1981 -3.1313 36 1 14.6624 -1.7056 -1.5211 37 1 11.5365 -1.4683 -0.8781 38 1 11.3367 -2.7684 0.3349 39 1 5.1881 -2.0805 0.4943 40 1 2.7314 -2.0871 0.4958 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592304669.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:11 Heat of formation + Delta-G solvation = -47.634639 kcal Electronic energy + Delta-G solvation = -26921.358883 eV Core-core repulsion = 22894.773992 eV Total energy + Delta-G solvation = -4026.584891 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.17761 -39.69709 -38.50790 -37.36495 -36.78048 -35.20407 -34.23591 -32.32222 -31.53704 -30.54115 -30.34274 -28.03255 -26.27899 -24.81132 -23.40474 -23.21959 -21.80483 -19.97552 -19.67765 -19.30359 -18.14119 -17.34785 -17.25106 -16.41989 -16.06654 -15.48073 -15.24819 -14.96305 -14.76491 -14.53944 -14.40259 -14.23548 -13.96939 -13.88154 -13.24532 -13.16390 -13.04077 -12.94519 -12.73526 -12.59820 -12.41074 -11.76835 -11.67564 -11.59735 -11.27147 -11.11089 -10.90884 -10.72716 -10.65231 -10.52951 -10.29411 -9.53053 -9.47000 -9.32922 -8.78270 -8.57111 -8.50198 -8.05101 -6.36914 -4.46491 0.29364 0.95097 1.50544 2.27625 2.37243 2.63264 3.15896 3.23971 3.26060 3.31879 3.54519 3.56872 3.63587 4.19597 4.36235 4.46126 4.48629 4.82122 4.90684 5.03070 5.10080 5.36920 5.52076 5.60663 5.68393 5.71593 5.82285 5.92157 5.92362 5.96400 6.17145 6.40669 6.44656 6.62994 6.63570 6.73128 6.86075 7.08343 7.18720 7.21380 7.54032 7.65240 7.83881 7.91611 8.20974 8.57895 9.20319 9.29158 10.70340 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.035222 B = 0.002328 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 794.764562 B =12025.274370 C =12435.827933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.260 3.740 3 C -0.055 4.055 4 C -0.046 4.046 5 C -0.147 4.147 6 C 0.186 3.814 7 N -0.653 5.653 8 C 0.512 3.488 9 O -0.489 6.489 10 C 0.509 3.491 11 O -0.533 6.533 12 N -0.570 5.570 13 C 0.108 3.892 14 C -0.121 4.121 15 C 0.249 3.751 16 O -0.581 6.581 17 C -0.537 4.537 18 H 0.069 0.931 19 C 0.071 3.929 20 N -0.894 5.894 21 Si 0.905 3.095 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C 0.091 3.909 26 C -0.126 4.126 27 C -0.045 4.045 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.426 0.574 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.381 0.619 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.147 0.853 40 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.511 5.023 3.986 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.101 5.101 2 C -0.055 4.055 3 C -0.059 4.059 4 C -0.067 4.067 5 C -0.167 4.167 6 C 0.089 3.911 7 N -0.300 5.300 8 C 0.295 3.705 9 O -0.361 6.361 10 C 0.290 3.710 11 O -0.412 6.412 12 N -0.301 5.301 13 C -0.014 4.014 14 C -0.159 4.159 15 C 0.208 3.792 16 O -0.389 6.389 17 C -0.575 4.575 18 H 0.087 0.913 19 C -0.133 4.133 20 N -0.532 5.532 21 Si 0.732 3.268 22 H -0.203 1.203 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.029 4.029 26 C -0.146 4.146 27 C -0.066 4.066 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.265 0.735 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.096 0.904 34 H 0.097 0.903 35 H 0.231 0.769 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.164 0.836 40 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -16.693 4.589 3.809 17.727 hybrid contribution 2.060 0.430 0.456 2.153 sum -14.634 5.019 4.266 16.048 Atomic orbital electron populations 1.81265 1.12114 1.07427 1.09306 1.25690 0.92606 0.93723 0.93473 1.16010 0.84316 0.95751 1.09835 1.20927 0.93301 0.96758 0.95752 1.20867 0.93910 0.98052 1.03895 1.18009 0.82525 0.94966 0.95586 1.43252 1.04500 1.18131 1.64094 1.20726 0.89603 0.82549 0.77581 1.90768 1.69990 1.34768 1.40571 1.19238 0.86552 0.83637 0.81524 1.90761 1.69162 1.35067 1.46198 1.48700 1.10513 1.14125 1.56799 1.22211 0.96138 0.84721 0.98376 1.22716 0.94150 0.97263 1.01807 1.19646 0.91942 0.87494 0.80113 1.86137 1.59991 1.59374 1.33445 1.21451 0.91244 0.95143 1.49676 0.91325 1.25091 0.99704 0.94957 0.93509 1.69699 1.28141 1.06572 1.48815 0.86377 0.82270 0.79527 0.78606 1.20349 1.21000 1.19655 1.23569 0.74516 1.03313 1.01514 1.21139 0.93676 0.98635 1.01186 1.21041 0.93473 0.96667 0.95444 0.84476 0.84196 0.73496 0.91567 0.90983 0.90386 0.90260 0.76881 0.91905 0.88928 0.91175 0.83570 0.84497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.04 18.54 41.84 0.78 -4.27 16 2 C 0.26 2.46 15.33 -22.47 -0.34 2.12 16 3 C -0.05 -0.43 5.74 -106.82 -0.61 -1.04 16 4 C -0.05 -0.30 9.75 -39.21 -0.38 -0.68 16 5 C -0.15 -1.02 9.94 -39.44 -0.39 -1.41 16 6 C 0.19 1.73 6.27 -83.76 -0.53 1.21 16 7 N -0.65 -7.02 5.30 -10.27 -0.05 -7.08 16 8 C 0.51 7.31 7.58 -11.63 -0.09 7.22 16 9 O -0.49 -7.39 11.80 5.47 0.06 -7.33 16 10 C 0.51 9.03 7.91 -11.63 -0.09 8.94 16 11 O -0.53 -10.42 16.74 5.49 0.09 -10.32 16 12 N -0.57 -10.92 3.33 -171.05 -0.57 -11.49 16 13 C 0.11 1.88 5.49 -3.06 -0.02 1.86 16 14 C -0.12 -2.30 6.13 -24.89 -0.15 -2.45 16 15 C 0.25 5.67 0.87 -89.61 -0.08 5.59 16 16 O -0.58 -14.05 13.16 -35.23 -0.46 -14.51 16 17 C -0.54 -13.23 8.27 -34.44 -0.28 -13.52 16 18 H 0.07 1.66 7.79 -52.48 -0.41 1.25 16 19 C 0.07 1.76 5.29 -17.82 -0.09 1.66 16 20 N -0.89 -22.58 10.69 55.43 0.59 -21.99 16 21 Si 0.90 19.49 29.54 -169.99 -5.02 14.47 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 24 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 25 C 0.09 2.02 5.38 -2.52 -0.01 2.01 16 26 C -0.13 -1.19 8.62 -39.44 -0.34 -1.53 16 27 C -0.05 -0.35 9.75 -39.21 -0.38 -0.74 16 28 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 29 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 30 H 0.43 3.93 8.29 -40.82 -0.34 3.59 16 31 H 0.07 1.03 7.71 -51.93 -0.40 0.63 16 32 H 0.07 1.26 7.57 -51.93 -0.39 0.87 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 34 H 0.08 1.40 8.03 -51.93 -0.42 0.98 16 35 H 0.38 9.41 7.56 45.56 0.34 9.76 16 36 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 37 H 0.09 2.28 7.33 -51.93 -0.38 1.90 16 38 H 0.07 1.58 8.03 -51.93 -0.42 1.17 16 39 H 0.15 1.52 6.41 -52.49 -0.34 1.18 16 40 H 0.14 0.85 8.06 -52.49 -0.42 0.42 16 LS Contribution 352.09 15.07 5.31 5.31 Total: -1.00 -28.63 352.09 -6.65 -35.28 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -3.57 Total: 12.70 kcal Atomic # 6 Polarization: 13.03 SS G_CDS: -3.80 Total: 9.23 kcal Atomic # 7 Polarization: -45.57 SS G_CDS: 0.74 Total: -44.83 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.31 Total: -32.17 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -28.63 -6.65 -35.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592304669.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.357 kcal (2) G-P(sol) polarization free energy of solvation -28.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds