Wall clock time and date at job start Tue Mar 31 2020 07:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35729 * 117.00035 * 2 1 4 4 C 1.39290 * 120.84811 * 359.97438 * 3 2 1 5 5 C 1.37947 * 119.09336 * 180.02562 * 4 3 2 6 6 N 1.31979 * 120.82482 * 0.02562 * 5 4 3 7 7 C 1.31952 * 121.86254 * 359.97438 * 6 5 4 8 8 C 1.50699 * 119.58710 * 180.02562 * 7 6 5 9 9 N 1.46507 * 109.46885 * 275.00216 * 8 7 6 10 10 S 1.65596 * 119.99863 * 165.00428 * 9 8 7 11 11 O 1.42103 * 106.39869 * 311.45588 * 10 9 8 12 12 O 1.42099 * 106.40196 * 178.53586 * 10 9 8 13 13 N 1.65594 * 107.21909 * 64.99704 * 10 9 8 14 14 C 1.46505 * 119.99845 * 269.99893 * 13 10 9 15 15 C 1.46500 * 120.00077 * 90.00126 * 13 10 9 16 16 H 1.09000 * 109.47175 * 359.97438 * 15 13 10 17 17 C 1.53006 * 109.46998 * 119.99765 * 15 13 10 18 18 C 1.50697 * 109.46896 * 239.99694 * 15 13 10 19 19 H 1.07994 * 120.00496 * 0.02562 * 18 15 13 20 20 C 1.37887 * 119.99690 * 179.97438 * 18 15 13 21 21 N 1.31515 * 119.99477 * 180.02562 * 20 18 15 22 22 Si 1.86789 * 119.99942 * 359.97438 * 20 18 15 23 23 H 1.48505 * 109.47181 * 90.00449 * 22 20 18 24 24 H 1.48500 * 109.47253 * 209.99840 * 22 20 18 25 25 H 1.48501 * 109.47537 * 330.00117 * 22 20 18 26 26 C 1.37989 * 120.82167 * 0.27667 * 7 6 5 27 27 H 1.09004 * 109.47144 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47689 * 300.00224 * 1 2 3 29 29 H 1.09000 * 109.47481 * 60.00015 * 1 2 3 30 30 H 1.08000 * 120.45038 * 0.02962 * 4 3 2 31 31 H 1.08006 * 119.59050 * 180.02562 * 5 4 3 32 32 H 1.08996 * 109.47140 * 155.00364 * 8 7 6 33 33 H 1.08995 * 109.47004 * 35.00061 * 8 7 6 34 34 H 0.96996 * 119.99988 * 344.99789 * 9 8 7 35 35 H 1.09004 * 109.47130 * 270.00127 * 14 13 10 36 36 H 1.08997 * 109.47212 * 29.99879 * 14 13 10 37 37 H 1.09003 * 109.46772 * 150.00492 * 14 13 10 38 38 H 1.09001 * 109.47002 * 179.97438 * 17 15 13 39 39 H 1.08993 * 109.46955 * 300.00226 * 17 15 13 40 40 H 1.09000 * 109.47050 * 60.00054 * 17 15 13 41 41 H 0.97006 * 119.99768 * 179.97438 * 21 20 18 42 42 H 1.07992 * 120.45329 * 179.70652 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3040 2.3886 -0.0005 5 6 1.9676 3.5980 -0.0011 6 7 3.2865 3.6457 -0.0016 7 6 4.0231 2.5509 -0.0011 8 6 5.5257 2.6650 -0.0011 9 7 6.0035 2.8215 -1.3772 10 16 7.5509 3.3376 -1.6627 11 8 7.7492 4.4828 -0.8451 12 8 7.7149 3.3525 -3.0742 13 7 8.5719 2.1685 -1.0857 14 6 9.0410 2.2251 0.3010 15 6 9.0061 1.0777 -1.9620 16 1 8.5576 1.2029 -2.9475 17 6 10.5308 1.1010 -2.0882 18 6 8.5706 -0.2407 -1.3762 19 1 8.0247 -0.2638 -0.4447 20 6 8.8684 -1.4176 -2.0302 21 7 8.4879 -2.5681 -1.5192 22 14 9.8108 -1.3775 -3.6424 23 1 11.2679 -1.4526 -3.3661 24 1 9.4060 -2.5341 -4.4813 25 1 9.5078 -0.1141 -4.3617 26 6 3.4346 1.3028 -0.0058 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.2244 2.3566 -0.0005 31 1 1.4008 4.5174 -0.0011 32 1 5.9586 1.7641 0.4335 33 1 5.8242 3.5322 0.5880 34 1 5.4135 2.6228 -2.1210 35 1 9.9663 2.7993 0.3485 36 1 8.2838 2.7044 0.9215 37 1 9.2220 1.2136 0.6649 38 1 10.8539 0.2891 -2.7398 39 1 10.8457 2.0546 -2.5117 40 1 10.9789 0.9756 -1.1025 41 1 8.6970 -3.3961 -1.9795 42 1 4.0431 0.4107 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595348791.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:45 Heat of formation + Delta-G solvation = -63.712437 kcal Electronic energy + Delta-G solvation = -26703.447374 eV Core-core repulsion = 22811.609249 eV Total energy + Delta-G solvation = -3891.838126 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 8.24 seconds Orbital eigenvalues (eV) -40.80573 -38.58118 -36.78652 -36.39353 -35.33597 -35.15096 -32.52513 -31.71505 -31.22558 -30.02604 -27.99110 -25.98087 -25.64505 -25.04428 -23.62597 -21.83636 -20.92649 -18.95186 -18.35093 -17.45106 -17.19578 -16.92038 -16.46837 -16.13883 -15.94305 -15.74543 -15.29480 -15.03676 -14.46477 -14.12900 -13.76277 -13.63738 -13.37146 -13.20618 -13.14676 -12.79475 -12.43126 -12.32149 -12.12402 -11.94500 -11.85360 -11.69033 -11.60132 -11.48121 -11.28517 -11.19779 -10.94886 -10.54445 -10.13749 -9.64720 -9.60997 -9.46727 -9.32492 -9.21305 -9.03128 -8.66281 -8.12066 -6.17828 -4.18718 0.79219 1.17299 1.27272 2.86705 3.23217 3.33752 3.36224 3.39145 3.72671 4.04104 4.15046 4.33074 4.42066 4.65711 4.78114 4.80520 4.87663 5.02803 5.04727 5.14068 5.14884 5.33573 5.45972 5.64687 5.65389 5.81789 5.92553 5.97888 6.09461 6.18639 6.27719 6.35792 6.41002 6.54913 6.66200 6.86639 6.98216 7.14857 7.30811 7.40983 7.63356 7.90501 8.41175 8.84146 9.43525 10.94323 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012149 B = 0.004253 C = 0.003415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.094038 B = 6582.438156 C = 8196.804259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.307 6.307 3 C 0.166 3.834 4 C -0.262 4.262 5 C 0.134 3.866 6 N -0.493 5.493 7 C 0.156 3.844 8 C 0.174 3.826 9 N -1.119 6.119 10 S 2.787 3.213 11 O -0.990 6.990 12 O -0.982 6.982 13 N -0.984 5.984 14 C 0.101 3.899 15 C 0.238 3.762 16 H 0.057 0.943 17 C -0.158 4.158 18 C -0.527 4.527 19 H 0.084 0.916 20 C 0.076 3.924 21 N -0.893 5.893 22 Si 0.876 3.124 23 H -0.276 1.276 24 H -0.295 1.295 25 H -0.261 1.261 26 C -0.182 4.182 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.138 0.862 31 H 0.159 0.841 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.414 0.586 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.085 0.915 38 H 0.048 0.952 39 H 0.034 0.966 40 H 0.058 0.942 41 H 0.265 0.735 42 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.028 7.470 4.864 16.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.218 6.218 3 C 0.113 3.887 4 C -0.284 4.284 5 C -0.024 4.024 6 N -0.206 5.206 7 C 0.018 3.982 8 C 0.047 3.953 9 N -0.878 5.878 10 S 2.796 3.204 11 O -0.973 6.973 12 O -0.966 6.966 13 N -0.826 5.826 14 C -0.045 4.045 15 C 0.134 3.866 16 H 0.075 0.925 17 C -0.217 4.217 18 C -0.566 4.566 19 H 0.102 0.898 20 C -0.127 4.127 21 N -0.531 5.531 22 Si 0.706 3.294 23 H -0.203 1.203 24 H -0.222 1.222 25 H -0.186 1.186 26 C -0.203 4.203 27 H 0.122 0.878 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.176 0.824 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.247 0.753 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.104 0.896 38 H 0.067 0.933 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -13.158 8.719 4.602 16.441 hybrid contribution -0.696 -1.488 -0.981 1.913 sum -13.853 7.231 3.620 16.041 Atomic orbital electron populations 1.23135 0.77881 1.04424 1.01490 1.86125 1.21779 1.26220 1.87682 1.19338 0.92418 0.84598 0.92379 1.22232 1.01451 0.93362 1.11323 1.22548 0.90018 0.96955 0.92863 1.67579 1.06862 1.31901 1.14219 1.20983 0.96094 0.87488 0.93624 1.20052 0.87848 1.03528 0.83824 1.55924 1.32691 1.86744 1.12428 1.01700 0.72426 0.73355 0.72967 1.93563 1.85350 1.47661 1.70714 1.93587 1.85332 1.87198 1.30516 1.57483 1.61396 1.43328 1.20415 1.21304 0.98532 1.03425 0.81239 1.19090 0.91591 0.85893 0.90067 0.92545 1.22411 0.99021 0.99018 1.01290 1.21201 1.37115 0.88137 1.10121 0.89843 1.24880 0.95264 0.95372 0.97177 1.69872 1.46260 0.97619 1.39313 0.87025 0.80199 0.77774 0.84373 1.20304 1.22240 1.18607 1.21509 0.92163 1.00272 1.06384 0.87815 0.92418 0.92380 0.84442 0.82427 0.89296 0.88716 0.75300 0.93615 0.92799 0.89603 0.93344 0.94691 0.92242 0.92474 0.82988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.84 101.05 0.99 1.17 16 2 O -0.31 -3.54 10.51 -18.89 -0.20 -3.74 16 3 C 0.17 2.01 6.74 -38.81 -0.26 1.75 16 4 C -0.26 -2.59 9.11 -39.30 -0.36 -2.95 16 5 C 0.13 1.43 11.17 -17.59 -0.20 1.24 16 6 N -0.49 -6.75 10.27 -9.55 -0.10 -6.85 16 7 C 0.16 2.17 6.17 -82.63 -0.51 1.66 16 8 C 0.17 2.51 6.55 -5.19 -0.03 2.47 16 9 N -1.12 -18.01 6.05 -11.65 -0.07 -18.09 16 10 S 2.79 52.71 6.09 -107.50 -0.66 52.05 16 11 O -0.99 -19.66 16.68 -57.17 -0.95 -20.61 16 12 O -0.98 -21.42 16.70 -57.17 -0.95 -22.38 16 13 N -0.98 -19.20 3.12 -115.84 -0.36 -19.56 16 14 C 0.10 1.68 9.28 59.85 0.56 2.24 16 15 C 0.24 5.41 2.21 -69.08 -0.15 5.26 16 16 H 0.06 1.37 5.97 -51.93 -0.31 1.06 16 17 C -0.16 -3.37 8.68 37.16 0.32 -3.05 16 18 C -0.53 -13.44 8.57 -34.44 -0.30 -13.74 16 19 H 0.08 2.23 7.58 -52.49 -0.40 1.83 16 20 C 0.08 2.06 5.45 -17.82 -0.10 1.97 16 21 N -0.89 -25.63 13.96 55.43 0.77 -24.85 16 22 Si 0.88 21.07 24.37 -169.99 -4.14 16.93 16 23 H -0.28 -6.44 6.87 56.52 0.39 -6.05 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.26 -6.18 6.53 56.52 0.37 -5.81 16 26 C -0.18 -2.45 9.68 -39.30 -0.38 -2.83 16 27 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.31 7.71 -51.93 -0.40 -0.09 16 29 H 0.06 0.33 7.71 -51.93 -0.40 -0.07 16 30 H 0.14 0.93 6.47 -52.49 -0.34 0.59 16 31 H 0.16 1.19 8.06 -52.48 -0.42 0.76 16 32 H 0.09 1.21 8.04 -51.93 -0.42 0.79 16 33 H 0.09 1.33 7.75 -51.93 -0.40 0.92 16 34 H 0.41 6.26 8.64 -34.47 -0.30 5.96 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.05 0.77 7.79 -51.93 -0.40 0.36 16 37 H 0.09 1.49 7.02 -51.93 -0.36 1.12 16 38 H 0.05 1.07 3.28 -51.93 -0.17 0.90 16 39 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 1.18 7.67 -51.93 -0.40 0.78 16 41 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.15 2.09 8.06 -52.49 -0.42 1.66 16 LS Contribution 356.19 15.07 5.37 5.37 Total: -1.00 -33.73 356.19 -7.31 -41.03 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.60 Total: 5.52 kcal Atomic # 6 Polarization: -4.41 SS G_CDS: -0.41 Total: -4.82 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: 0.24 Total: -69.35 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -2.11 Total: -46.73 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.14 Total: 16.93 kcal Atomic # 16 Polarization: 52.71 SS G_CDS: -0.66 Total: 52.05 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.73 -7.31 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595348791.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.679 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 8.24 seconds