Wall clock time and date at job start Tue Mar 31 2020 07:44:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35735 * 117.00084 * 2 1 4 4 C 1.39292 * 120.84346 * 359.97438 * 3 2 1 5 5 C 1.37951 * 119.09049 * 180.02562 * 4 3 2 6 6 N 1.31982 * 120.82579 * 0.02562 * 5 4 3 7 7 C 1.31941 * 121.86233 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.58750 * 180.02562 * 7 6 5 9 9 N 1.46500 * 109.47412 * 275.00067 * 8 7 6 10 10 S 1.65593 * 119.99925 * 164.99847 * 9 8 7 11 11 O 1.42096 * 106.40460 * 311.46213 * 10 9 8 12 12 O 1.42108 * 106.40218 * 178.54273 * 10 9 8 13 13 N 1.65606 * 107.21842 * 65.00539 * 10 9 8 14 14 C 1.46497 * 119.99739 * 269.99739 * 13 10 9 15 15 C 1.46497 * 120.00188 * 89.99816 * 13 10 9 16 16 H 1.09007 * 109.47078 * 359.97438 * 15 13 10 17 17 C 1.53000 * 109.47021 * 240.00233 * 15 13 10 18 18 C 1.50694 * 109.47115 * 120.00014 * 15 13 10 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.37995 * 120.82108 * 0.27889 * 7 6 5 27 27 H 1.08997 * 109.47254 * 60.00659 * 1 2 3 28 28 H 1.09007 * 109.46775 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47169 * 299.99862 * 1 2 3 30 30 H 1.07997 * 120.45217 * 0.02567 * 4 3 2 31 31 H 1.08000 * 119.58508 * 180.02562 * 5 4 3 32 32 H 1.09006 * 109.46596 * 154.99978 * 8 7 6 33 33 H 1.09004 * 109.47086 * 35.00279 * 8 7 6 34 34 H 0.97005 * 119.99538 * 345.00608 * 9 8 7 35 35 H 1.09001 * 109.46905 * 270.00036 * 14 13 10 36 36 H 1.09005 * 109.47144 * 29.99977 * 14 13 10 37 37 H 1.08993 * 109.47302 * 150.00165 * 14 13 10 38 38 H 1.08998 * 109.47089 * 59.99825 * 17 15 13 39 39 H 1.08995 * 109.47131 * 179.97438 * 17 15 13 40 40 H 1.09002 * 109.47106 * 299.99878 * 17 15 13 41 41 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 42 42 H 1.08002 * 120.45078 * 179.70693 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 6 1.3039 2.3886 -0.0005 5 6 1.9675 3.5981 -0.0011 6 7 3.2864 3.6458 -0.0016 7 6 4.0230 2.5511 -0.0011 8 6 5.5256 2.6653 -0.0011 9 7 6.0035 2.8218 -1.3771 10 16 7.5508 3.3380 -1.6625 11 8 7.7491 4.4831 -0.8448 12 8 7.7149 3.3530 -3.0740 13 7 8.5719 2.1689 -1.0855 14 6 9.0410 2.2254 0.3012 15 6 9.0062 1.0781 -1.9618 16 1 8.5578 1.2033 -2.9474 17 6 8.5641 -0.2605 -1.3672 18 6 10.5079 1.1011 -2.0860 19 1 11.0815 1.8533 -1.5647 20 6 11.1496 0.1625 -2.8660 21 7 10.4512 -0.7531 -3.5012 22 14 13.0109 0.1916 -3.0205 23 1 13.3990 1.0482 -4.1697 24 1 13.6028 0.7386 -1.7732 25 1 13.5108 -1.1893 -3.2414 26 6 3.4344 1.3029 -0.0058 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2244 2.3565 -0.0005 31 1 1.4006 4.5173 -0.0011 32 1 5.9584 1.7642 0.4336 33 1 5.8241 3.5325 0.5880 34 1 5.4135 2.6231 -2.1210 35 1 9.9662 2.7997 0.3487 36 1 8.2836 2.7047 0.9217 37 1 9.2220 1.2141 0.6651 38 1 7.4779 -0.2771 -1.2774 39 1 8.8868 -1.0720 -2.0194 40 1 9.0122 -0.3860 -0.3815 41 1 10.9026 -1.4132 -4.0502 42 1 4.0431 0.4108 -0.0101 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595348792.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:44:58 Heat of formation + Delta-G solvation = -70.471336 kcal Electronic energy + Delta-G solvation = -26439.657350 eV Core-core repulsion = 22547.526136 eV Total energy + Delta-G solvation = -3892.131214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 5.47 seconds Orbital eigenvalues (eV) -40.93310 -38.70902 -36.62900 -36.15183 -35.22803 -35.16480 -32.55262 -31.84676 -31.31979 -29.07210 -28.10937 -26.02668 -25.54021 -25.09775 -23.75470 -21.94837 -20.76764 -18.88874 -18.42212 -17.43836 -17.15420 -16.80052 -16.41817 -16.24386 -15.95024 -15.68688 -15.25909 -14.98219 -14.33754 -14.22747 -13.87219 -13.54549 -13.45677 -13.27904 -13.07149 -12.75871 -12.51095 -12.02562 -11.95130 -11.72319 -11.69513 -11.44147 -11.32619 -11.30797 -11.18610 -10.94598 -10.78709 -10.45002 -10.24107 -9.99846 -9.73747 -9.44600 -9.34470 -9.21139 -9.16732 -8.42716 -7.95266 -6.04774 -4.10964 0.69906 1.06728 1.30975 2.72880 3.31476 3.36889 3.37965 3.41374 3.72034 3.97539 4.20637 4.30302 4.42995 4.54199 4.66550 4.69367 4.83372 4.91022 5.02843 5.06365 5.24047 5.26982 5.41614 5.50422 5.62207 5.68332 5.78881 5.93822 6.16152 6.22718 6.39963 6.65462 6.79234 6.81635 6.83769 7.03936 7.14470 7.51119 7.66508 7.80009 7.81998 8.07028 8.30561 8.91418 9.54719 11.00942 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.018495 B = 0.003198 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.543252 B = 8753.435052 C = 9688.131505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.309 6.309 3 C 0.166 3.834 4 C -0.262 4.262 5 C 0.136 3.864 6 N -0.491 5.491 7 C 0.157 3.843 8 C 0.174 3.826 9 N -1.126 6.126 10 S 2.781 3.219 11 O -0.992 6.992 12 O -0.972 6.972 13 N -0.990 5.990 14 C 0.107 3.893 15 C 0.268 3.732 16 H 0.059 0.941 17 C -0.148 4.148 18 C -0.519 4.519 19 H 0.063 0.937 20 C 0.063 3.937 21 N -0.891 5.891 22 Si 0.898 3.102 23 H -0.280 1.280 24 H -0.274 1.274 25 H -0.287 1.287 26 C -0.187 4.187 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.139 0.861 31 H 0.160 0.840 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.413 0.587 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.011 0.989 39 H 0.092 0.908 40 H 0.034 0.966 41 H 0.263 0.737 42 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.379 1.517 9.546 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.220 6.220 3 C 0.113 3.887 4 C -0.283 4.283 5 C -0.021 4.021 6 N -0.204 5.204 7 C 0.019 3.981 8 C 0.047 3.953 9 N -0.884 5.884 10 S 2.790 3.210 11 O -0.975 6.975 12 O -0.956 6.956 13 N -0.833 5.833 14 C -0.039 4.039 15 C 0.165 3.835 16 H 0.077 0.923 17 C -0.208 4.208 18 C -0.558 4.558 19 H 0.081 0.919 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.726 3.274 23 H -0.206 1.206 24 H -0.199 1.199 25 H -0.212 1.212 26 C -0.208 4.208 27 H 0.077 0.923 28 H 0.122 0.878 29 H 0.076 0.924 30 H 0.156 0.844 31 H 0.177 0.823 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.245 0.755 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.030 0.970 39 H 0.111 0.889 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -19.483 2.809 9.177 21.718 hybrid contribution -0.225 -1.302 -0.275 1.350 sum -19.708 1.507 8.902 21.677 Atomic orbital electron populations 1.23144 0.77740 1.04455 1.01612 1.86097 1.21908 1.26250 1.87751 1.19322 0.92385 0.84624 0.92398 1.22249 1.01528 0.93340 1.11189 1.22591 0.89995 0.97044 0.92460 1.67592 1.06872 1.31858 1.14044 1.21021 0.96170 0.87508 0.93412 1.20030 0.87718 1.03361 0.84224 1.56208 1.33125 1.87043 1.12073 1.01947 0.72305 0.73551 0.73233 1.93543 1.85289 1.47912 1.70798 1.93618 1.84964 1.86876 1.30136 1.57716 1.60385 1.44707 1.20473 1.21183 0.98845 1.02495 0.81379 1.18733 0.95470 0.81262 0.88048 0.92325 1.22119 0.95882 1.01944 1.00809 1.21342 0.91165 1.14034 1.29303 0.91922 1.24910 0.98554 0.95249 0.95208 1.69861 1.35318 1.16948 1.30820 0.86499 0.85186 0.77150 0.78575 1.20586 1.19879 1.21235 1.21414 0.92105 1.00000 1.07296 0.92296 0.87789 0.92356 0.84356 0.82305 0.89853 0.88532 0.75476 0.93173 0.93310 0.90904 0.96985 0.88926 0.94734 0.92746 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.84 101.05 0.99 1.13 16 2 O -0.31 -2.96 10.51 -18.91 -0.20 -3.16 16 3 C 0.17 1.72 6.74 -38.82 -0.26 1.46 16 4 C -0.26 -2.26 9.11 -39.29 -0.36 -2.62 16 5 C 0.14 1.33 11.17 -17.59 -0.20 1.13 16 6 N -0.49 -6.26 10.27 -9.55 -0.10 -6.36 16 7 C 0.16 1.96 6.17 -82.63 -0.51 1.45 16 8 C 0.17 2.27 6.55 -5.19 -0.03 2.24 16 9 N -1.13 -17.30 6.05 -11.65 -0.07 -17.37 16 10 S 2.78 54.94 6.09 -107.50 -0.66 54.28 16 11 O -0.99 -20.87 16.68 -57.17 -0.95 -21.82 16 12 O -0.97 -22.94 16.70 -57.17 -0.95 -23.90 16 13 N -0.99 -20.23 3.12 -115.86 -0.36 -20.59 16 14 C 0.11 1.86 9.53 59.85 0.57 2.43 16 15 C 0.27 6.48 2.62 -69.09 -0.18 6.30 16 16 H 0.06 1.58 6.91 -51.92 -0.36 1.22 16 17 C -0.15 -3.28 8.95 37.16 0.33 -2.95 16 18 C -0.52 -13.95 8.37 -34.44 -0.29 -14.24 16 19 H 0.06 1.68 7.65 -52.49 -0.40 1.28 16 20 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 21 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 22 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 23 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 24 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 C -0.19 -2.13 9.68 -39.30 -0.38 -2.51 16 27 H 0.06 0.26 7.71 -51.93 -0.40 -0.15 16 28 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.23 7.71 -51.93 -0.40 -0.17 16 30 H 0.14 0.78 6.47 -52.49 -0.34 0.44 16 31 H 0.16 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.08 0.94 8.04 -51.93 -0.42 0.52 16 33 H 0.10 1.29 7.75 -51.93 -0.40 0.88 16 34 H 0.41 5.88 8.64 -34.47 -0.30 5.58 16 35 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.05 0.69 7.79 -51.93 -0.40 0.29 16 37 H 0.07 1.21 6.43 -51.93 -0.33 0.87 16 38 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 39 H 0.09 2.30 6.07 -51.93 -0.32 1.98 16 40 H 0.03 0.71 6.66 -51.93 -0.35 0.37 16 41 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 42 H 0.15 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 362.33 15.07 5.46 5.46 Total: -1.00 -34.40 362.33 -8.30 -42.70 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: -5.67 Total: 3.26 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.41 Total: -4.55 kcal Atomic # 7 Polarization: -68.56 SS G_CDS: 0.10 Total: -68.46 kcal Atomic # 8 Polarization: -46.77 SS G_CDS: -2.11 Total: -48.88 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 54.94 SS G_CDS: -0.66 Total: 54.28 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.40 -8.30 -42.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595348792.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.768 kcal (2) G-P(sol) polarization free energy of solvation -34.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.48 seconds