Wall clock time and date at job start Tue Mar 31 2020 06:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53007 * 109.47184 * 2 1 4 4 C 1.52995 * 109.47251 * 120.00068 * 2 1 3 5 5 H 1.08995 * 109.47434 * 58.29760 * 4 2 1 6 6 N 1.46501 * 109.47293 * 178.30128 * 4 2 1 7 7 S 1.65600 * 119.99734 * 256.04861 * 6 4 2 8 8 O 1.42099 * 104.27745 * 308.92148 * 7 6 4 9 9 O 1.42111 * 104.27344 * 181.06764 * 7 6 4 10 10 C 1.81399 * 104.44876 * 64.99680 * 7 6 4 11 11 C 1.52999 * 117.51845 * 110.09986 * 10 7 6 12 12 C 1.53001 * 117.49445 * 178.72847 * 10 7 6 13 13 C 1.50707 * 109.46876 * 298.30185 * 4 2 1 14 14 O 1.21290 * 119.99607 * 271.39790 * 13 4 2 15 15 N 1.34773 * 119.99967 * 91.40369 * 13 4 2 16 16 C 1.37092 * 119.99989 * 183.35028 * 15 13 4 17 17 H 1.08001 * 119.99869 * 129.16124 * 16 15 13 18 18 C 1.38953 * 120.00500 * 309.16722 * 16 15 13 19 19 N 1.31414 * 120.00389 * 168.78958 * 18 16 15 20 20 Si 1.86802 * 119.99784 * 348.78932 * 18 16 15 21 21 H 1.48501 * 109.47173 * 94.06057 * 20 18 16 22 22 H 1.48497 * 109.47255 * 214.06612 * 20 18 16 23 23 H 1.48500 * 109.46757 * 334.06177 * 20 18 16 24 24 C 1.46499 * 120.00254 * 3.35720 * 15 13 4 25 25 C 1.47200 * 109.47337 * 92.82155 * 24 15 13 26 26 N 5.42797 * 76.84553 * 133.30953 * 2 1 3 27 27 H 1.09001 * 109.47022 * 300.58424 * 1 2 3 28 28 H 1.09000 * 109.47042 * 60.57546 * 1 2 3 29 29 H 1.08996 * 109.47560 * 180.58334 * 1 2 3 30 30 H 1.09001 * 109.47075 * 239.99906 * 2 1 3 31 31 H 1.09002 * 109.46840 * 174.53430 * 3 2 1 32 32 H 1.08994 * 109.46934 * 294.53076 * 3 2 1 33 33 H 1.09000 * 109.46956 * 54.53578 * 3 2 1 34 34 H 0.96996 * 119.99795 * 76.04949 * 6 4 2 35 35 H 1.08997 * 115.55010 * 324.39872 * 10 7 6 36 36 H 1.08999 * 117.49939 * 214.97274 * 11 10 7 37 37 H 1.09001 * 117.49923 * 359.97438 * 11 10 7 38 38 H 1.08988 * 117.50351 * 359.97438 * 12 10 7 39 39 H 1.09004 * 117.49275 * 144.99908 * 12 10 7 40 40 H 0.97000 * 120.00127 * 180.02562 * 19 18 16 41 41 H 1.09003 * 109.47338 * 212.82333 * 24 15 13 42 42 H 1.09004 * 109.46992 * 332.82353 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6520 -1.7397 1.2646 6 7 3.5044 -0.7568 1.2289 7 16 4.2932 -2.1586 0.8348 8 8 3.7067 -3.1398 1.6789 9 8 5.6710 -1.8277 0.9433 10 6 3.8450 -2.4586 -0.8971 11 6 4.9411 -2.2874 -1.9508 12 6 4.4482 -3.6877 -1.5801 13 6 1.5723 0.0131 2.4793 14 8 2.2439 0.9111 2.9415 15 7 0.4078 -0.3281 3.0658 16 6 -0.0514 0.3842 4.1434 17 1 -1.0634 0.7615 4.1497 18 6 0.7849 0.6208 5.2275 19 7 0.4300 1.4803 6.1561 20 14 2.4140 -0.2830 5.3651 21 1 3.4936 0.5504 4.7775 22 1 2.7147 -0.5465 6.7952 23 1 2.3286 -1.5714 4.6317 24 6 -0.3671 -1.4602 2.5520 25 6 0.0064 -2.6824 3.2824 26 7 0.2947 -3.6256 3.8461 27 1 -0.3633 0.5229 0.8847 28 1 -0.3633 0.5049 -0.8951 29 1 -0.3634 -1.0275 0.0105 30 1 1.8933 -0.5139 -0.8900 31 1 3.1256 1.4440 0.0979 32 1 1.7589 1.9273 -0.9349 33 1 1.5990 1.9838 0.8370 34 1 4.0119 0.0407 1.4463 35 1 2.8302 -2.1751 -1.1760 36 1 4.6474 -1.8913 -2.9228 37 1 5.9318 -1.9941 -1.6034 38 1 5.1145 -4.3157 -0.9890 39 1 3.8300 -4.2127 -2.3084 40 1 1.0140 1.6457 6.9126 41 1 -1.4306 -1.2651 2.6901 42 1 -0.1568 -1.5926 1.4907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597032664.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:34 Heat of formation + Delta-G solvation = -26.418259 kcal Electronic energy + Delta-G solvation = -28431.797056 eV Core-core repulsion = 24541.576127 eV Total energy + Delta-G solvation = -3890.220929 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.09297 -37.46614 -37.01043 -36.49371 -36.02031 -35.95475 -34.56674 -32.84758 -32.15709 -28.03388 -27.15091 -26.68732 -24.16288 -23.82018 -22.96483 -21.14007 -19.61149 -19.14081 -18.42084 -17.66258 -17.53053 -16.87323 -16.17812 -15.94714 -15.51053 -15.20940 -15.10022 -14.76454 -14.08094 -13.80874 -13.59606 -13.30461 -13.23749 -12.88176 -12.52165 -12.45684 -12.27070 -12.25346 -12.08428 -11.97251 -11.94585 -11.78809 -11.66642 -11.51313 -11.46665 -11.35195 -11.18562 -10.97205 -10.79996 -10.75953 -10.59290 -10.34169 -9.99524 -9.60255 -8.80578 -8.60834 -7.91970 -6.31930 -4.24698 0.19869 2.51370 2.94757 3.07297 3.28788 3.35455 3.50697 3.57953 3.61696 3.65463 4.08107 4.21365 4.25489 4.42518 4.45532 4.56285 4.63657 4.74965 4.90714 4.92403 5.08272 5.09649 5.14580 5.24589 5.27881 5.39496 5.45252 5.54962 5.65757 5.75739 5.80099 5.84654 5.95778 6.09819 6.10996 6.37311 6.57725 7.07795 7.66328 7.77774 8.13573 8.50888 8.63860 9.22909 9.48663 10.72299 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.005765 C = 0.005506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.743281 B = 4855.698556 C = 5084.574456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.100 4.100 3 C -0.147 4.147 4 C 0.126 3.874 5 H 0.098 0.902 6 N -1.095 6.095 7 S 2.629 3.371 8 O -0.944 6.944 9 O -0.955 6.955 10 C -0.690 4.690 11 C -0.123 4.123 12 C -0.128 4.128 13 C 0.474 3.526 14 O -0.516 6.516 15 N -0.460 5.460 16 C -0.349 4.349 17 H 0.104 0.896 18 C 0.098 3.902 19 N -0.862 5.862 20 Si 0.891 3.109 21 H -0.255 1.255 22 H -0.304 1.304 23 H -0.270 1.270 24 C 0.175 3.825 25 C 0.190 3.810 26 N -0.432 5.432 27 H 0.080 0.920 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.427 0.573 35 H 0.162 0.838 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.105 0.895 39 H 0.115 0.885 40 H 0.275 0.725 41 H 0.123 0.877 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.319 -5.054 -20.568 21.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.121 4.121 3 C -0.205 4.205 4 C 0.014 3.986 5 H 0.116 0.884 6 N -0.855 5.855 7 S 2.719 3.281 8 O -0.933 6.933 9 O -0.945 6.945 10 C -0.797 4.797 11 C -0.161 4.161 12 C -0.167 4.167 13 C 0.261 3.739 14 O -0.394 6.394 15 N -0.184 5.184 16 C -0.475 4.475 17 H 0.122 0.878 18 C -0.113 4.113 19 N -0.496 5.496 20 Si 0.721 3.279 21 H -0.181 1.181 22 H -0.232 1.232 23 H -0.195 1.195 24 C 0.048 3.952 25 C -0.129 4.129 26 N -0.110 5.110 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.095 0.905 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.264 0.736 35 H 0.180 0.820 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.134 0.866 40 H 0.085 0.915 41 H 0.140 0.860 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 3.576 -6.525 -18.771 20.192 hybrid contribution 0.372 0.377 -0.330 0.624 sum 3.949 -6.148 -19.102 20.451 Atomic orbital electron populations 1.22237 0.94068 1.02119 1.04027 1.21517 0.96741 0.98186 0.95656 1.21826 1.01615 0.94702 1.02328 1.21025 0.80345 1.00978 0.96211 0.88403 1.55298 1.14015 1.31209 1.85006 1.04362 0.73792 0.73774 0.76175 1.93666 1.78433 1.60022 1.61219 1.93593 1.31730 1.83035 1.86174 1.32725 1.09634 1.15050 1.22308 1.22839 0.96411 0.99007 0.97806 1.22761 1.01807 0.90022 1.02083 1.20305 0.83773 0.85197 0.84641 1.90553 1.53546 1.31455 1.63863 1.43567 1.20214 1.24726 1.29868 1.18853 1.01537 1.33109 0.94008 0.87819 1.25356 0.98367 0.93698 0.93878 1.69663 1.38232 1.30497 1.11174 0.86583 0.85065 0.80272 0.76029 1.18051 1.23249 1.19469 1.19863 0.99882 0.79431 0.95989 1.30154 0.93755 0.94617 0.94405 1.81052 1.08055 1.13180 1.08749 0.90070 0.91718 0.91968 0.90535 0.92387 0.92884 0.90757 0.73575 0.82032 0.86872 0.86484 0.87663 0.86634 0.91546 0.85971 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.67 7.67 37.16 0.29 -1.38 16 2 C -0.10 -1.15 2.92 -90.62 -0.26 -1.41 16 3 C -0.15 -1.84 8.53 37.16 0.32 -1.53 16 4 C 0.13 1.98 2.04 -69.08 -0.14 1.84 16 5 H 0.10 1.43 5.53 -51.93 -0.29 1.14 16 6 N -1.09 -17.27 4.74 -5.88 -0.03 -17.30 16 7 S 2.63 39.30 5.77 -107.50 -0.62 38.68 16 8 O -0.94 -18.07 17.44 -57.54 -1.00 -19.08 16 9 O -0.96 -16.13 17.37 -57.54 -1.00 -17.13 16 10 C -0.69 -6.54 6.45 -26.73 -0.17 -6.71 16 11 C -0.12 -0.93 10.17 -26.73 -0.27 -1.20 16 12 C -0.13 -1.00 10.30 -26.73 -0.28 -1.27 16 13 C 0.47 9.88 3.47 -10.98 -0.04 9.84 16 14 O -0.52 -12.61 11.28 5.55 0.06 -12.55 16 15 N -0.46 -9.69 1.46 -117.93 -0.17 -9.86 16 16 C -0.35 -8.92 9.60 -14.93 -0.14 -9.06 16 17 H 0.10 2.69 8.06 -52.49 -0.42 2.27 16 18 C 0.10 2.77 5.05 -17.47 -0.09 2.68 16 19 N -0.86 -25.42 13.96 55.50 0.77 -24.64 16 20 Si 0.89 24.64 24.71 -169.99 -4.20 20.44 16 21 H -0.26 -7.17 6.49 56.52 0.37 -6.80 16 22 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 23 H -0.27 -7.61 7.10 56.52 0.40 -7.21 16 24 C 0.17 2.79 4.52 -6.83 -0.03 2.76 16 25 C 0.19 3.74 15.55 -20.76 -0.32 3.41 16 26 N -0.43 -9.60 18.54 42.15 0.78 -8.82 16 27 H 0.08 1.01 6.31 -51.93 -0.33 0.68 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.48 6.22 -51.93 -0.32 0.16 16 30 H 0.08 0.64 6.34 -51.93 -0.33 0.31 16 31 H 0.06 0.72 7.03 -51.93 -0.36 0.35 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.07 1.16 6.91 -51.93 -0.36 0.80 16 34 H 0.43 6.77 7.62 -34.47 -0.26 6.51 16 35 H 0.16 1.19 6.39 -51.93 -0.33 0.86 16 36 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.12 0.93 7.67 -51.93 -0.40 0.53 16 38 H 0.11 0.79 8.14 -51.94 -0.42 0.37 16 39 H 0.12 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 41 H 0.12 1.58 8.06 -51.93 -0.42 1.16 16 42 H 0.11 1.29 2.99 -51.93 -0.16 1.13 16 LS Contribution 350.37 15.07 5.28 5.28 Total: -1.00 -38.23 350.37 -6.53 -44.77 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -5.26 Total: 2.24 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: -1.15 Total: -2.02 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: 1.36 Total: -60.62 kcal Atomic # 8 Polarization: -46.82 SS G_CDS: -1.94 Total: -48.76 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.20 Total: 20.44 kcal Atomic # 16 Polarization: 39.30 SS G_CDS: -0.62 Total: 38.68 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -38.23 -6.53 -44.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597032664.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.349 kcal (2) G-P(sol) polarization free energy of solvation -38.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds