Wall clock time and date at job start Tue Mar 31 2020 05:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42894 * 113.99917 * 2 1 4 4 C 1.53001 * 109.47127 * 179.97438 * 3 2 1 5 5 O 1.42910 * 109.47056 * 64.99796 * 4 3 2 6 6 C 1.42897 * 114.00003 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.46918 * 180.02562 * 6 5 4 8 8 N 1.46497 * 109.47292 * 65.00174 * 7 6 5 9 9 S 1.65597 * 120.00470 * 165.80729 * 8 7 6 10 10 O 1.42101 * 106.39843 * 313.34714 * 9 8 7 11 11 O 1.42101 * 106.40540 * 180.42565 * 9 8 7 12 12 C 1.76199 * 107.21685 * 66.88224 * 9 8 7 13 13 C 1.37645 * 120.12807 * 113.08359 * 12 9 8 14 14 C 1.38610 * 120.24630 * 180.32331 * 13 12 9 15 15 C 1.38654 * 120.50424 * 359.66500 * 14 13 12 16 16 C 1.37599 * 120.24897 * 0.02562 * 15 14 13 17 17 C 1.40701 * 120.13061 * 292.77391 * 12 9 8 18 18 C 1.41396 * 120.23852 * 359.97438 * 17 12 9 19 19 H 1.07998 * 120.00265 * 330.61290 * 18 17 12 20 20 C 1.39953 * 119.99498 * 150.61695 * 18 17 12 21 21 N 1.30824 * 119.99994 * 337.78191 * 20 18 17 22 22 Si 1.86797 * 119.99914 * 157.78807 * 20 18 17 23 23 H 1.48502 * 109.46958 * 179.97438 * 22 20 18 24 24 H 1.48499 * 109.47272 * 299.99626 * 22 20 18 25 25 H 1.48504 * 109.47076 * 59.99763 * 22 20 18 26 26 H 1.09002 * 109.47054 * 60.00066 * 1 2 3 27 27 H 1.09001 * 109.47369 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47237 * 300.00210 * 1 2 3 29 29 H 1.08997 * 109.47324 * 60.00243 * 3 2 1 30 30 H 1.09006 * 109.47267 * 299.99775 * 3 2 1 31 31 H 1.09001 * 109.46972 * 305.00307 * 4 3 2 32 32 H 1.09001 * 109.47692 * 184.99956 * 4 3 2 33 33 H 1.09003 * 109.47208 * 59.99941 * 6 5 4 34 34 H 1.09010 * 109.47013 * 299.99989 * 6 5 4 35 35 H 1.08998 * 109.47107 * 304.99876 * 7 6 5 36 36 H 1.08998 * 109.47033 * 184.99820 * 7 6 5 37 37 H 0.97003 * 120.00039 * 345.80637 * 8 7 6 38 38 H 1.08000 * 119.87532 * 0.02562 * 13 12 9 39 39 H 1.08007 * 119.74787 * 179.69025 * 14 13 12 40 40 H 1.08001 * 119.87489 * 180.02562 * 15 14 13 41 41 H 1.07995 * 120.12769 * 180.02562 * 16 15 14 42 42 H 0.97004 * 119.99698 * 354.31597 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 8 3.9659 0.5791 -1.2202 6 6 5.3822 0.4186 -1.3216 7 6 5.7266 -0.2350 -2.6614 8 7 5.3598 0.6689 -3.7543 9 16 5.9280 0.3910 -5.2848 10 8 7.3176 0.1242 -5.1546 11 8 5.4096 1.4326 -6.1006 12 6 5.1858 -1.1025 -5.8534 13 6 4.2873 -1.0742 -6.8958 14 6 3.6969 -2.2468 -7.3407 15 6 4.0084 -3.4607 -6.7475 16 6 4.9086 -3.5136 -5.7082 17 6 5.5142 -2.3294 -5.2481 18 6 6.4412 -2.3715 -4.1812 19 1 7.2292 -1.6355 -4.1212 20 6 6.3375 -3.3671 -3.2031 21 7 5.1950 -3.9728 -3.0048 22 14 7.8304 -3.8310 -2.1807 23 1 7.4601 -4.9029 -1.2219 24 1 8.9110 -4.3182 -3.0752 25 1 8.3068 -2.6405 -1.4318 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6886 1.8463 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.8507 0.5684 0.8427 32 1 3.9785 2.1765 0.0902 33 1 5.7354 -0.2137 -0.5070 34 1 5.8638 1.3945 -1.2593 35 1 5.1750 -1.1697 -2.7622 36 1 6.7967 -0.4385 -2.7019 37 1 4.7841 1.4302 -3.5816 38 1 4.0377 -0.1343 -7.3656 39 1 2.9892 -2.2146 -8.1559 40 1 3.5427 -4.3681 -7.1025 41 1 5.1501 -4.4602 -5.2478 42 1 4.4008 -3.6765 -3.4763 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601317891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:30 Heat of formation + Delta-G solvation = -154.434423 kcal Electronic energy + Delta-G solvation = -27206.569130 eV Core-core repulsion = 23278.504253 eV Total energy + Delta-G solvation = -3928.064877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.47003 -37.88450 -37.26929 -36.32395 -34.90361 -34.64156 -33.88380 -30.46785 -30.18244 -29.43559 -27.88800 -26.26207 -25.40950 -22.56345 -22.19092 -21.67014 -21.18535 -18.69304 -18.15231 -17.06929 -16.86468 -16.75690 -16.18507 -15.74902 -15.37063 -15.25907 -14.88301 -14.77969 -14.42720 -14.03926 -13.75625 -13.49315 -13.25264 -12.95428 -12.61265 -12.38426 -12.22502 -11.96460 -11.72822 -11.46409 -11.38009 -11.23301 -11.18602 -11.10117 -11.00464 -10.95142 -10.67086 -10.49207 -10.42837 -9.80473 -9.74203 -9.48322 -9.30710 -9.26996 -8.58633 -8.19252 -7.78249 -7.42931 -4.82695 1.55932 2.25917 2.66979 3.07294 3.16111 3.29293 3.70260 3.76482 3.85277 4.04113 4.34333 4.70136 4.92710 5.09837 5.16389 5.18734 5.25914 5.28474 5.36175 5.40291 5.48669 5.54556 5.62509 5.66407 5.75166 5.94938 6.08273 6.18250 6.31452 6.46004 6.65616 6.77651 6.92473 7.08515 7.17924 7.31692 7.37750 7.41042 7.59403 7.69180 7.73988 7.83453 7.99882 8.40624 8.59689 9.79344 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009205 B = 0.005265 C = 0.004723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3041.127446 B = 5316.479320 C = 5926.900490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.379 6.379 3 C 0.063 3.937 4 C 0.061 3.939 5 O -0.372 6.372 6 C 0.051 3.949 7 C 0.127 3.873 8 N -1.116 6.116 9 S 2.709 3.291 10 O -0.976 6.976 11 O -1.000 7.000 12 C -0.779 4.779 13 C 0.013 3.987 14 C -0.261 4.261 15 C -0.057 4.057 16 C -0.210 4.210 17 C 0.169 3.831 18 C -0.532 4.532 19 H 0.118 0.882 20 C 0.042 3.958 21 N -0.773 5.773 22 Si 1.056 2.944 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.267 1.267 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.037 0.963 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.408 0.592 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.285 6.612 8.784 11.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.298 6.298 3 C -0.014 4.014 4 C -0.016 4.016 5 O -0.291 6.291 6 C -0.027 4.027 7 C 0.001 3.999 8 N -0.873 5.873 9 S 2.806 3.194 10 O -0.966 6.966 11 O -0.991 6.991 12 C -0.873 4.873 13 C -0.007 4.007 14 C -0.281 4.281 15 C -0.075 4.075 16 C -0.229 4.229 17 C 0.164 3.836 18 C -0.558 4.558 19 H 0.135 0.865 20 C -0.183 4.183 21 N -0.395 5.395 22 Si 0.879 3.121 23 H -0.196 1.196 24 H -0.194 1.194 25 H -0.192 1.192 26 H 0.060 0.940 27 H 0.104 0.896 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.241 0.759 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.129 0.871 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -3.093 5.712 9.381 11.411 hybrid contribution -1.535 0.910 -0.981 2.036 sum -4.628 6.622 8.400 11.655 Atomic orbital electron populations 1.22735 0.81315 1.02877 0.99576 1.88019 1.19369 1.27108 1.95286 1.22552 0.92686 0.85600 1.00524 1.22481 0.93206 0.97347 0.88527 1.88040 1.22223 1.81825 1.37007 1.22913 0.81487 0.99600 0.98681 1.21838 1.01565 0.93327 0.83133 1.55396 1.67544 1.38751 1.25659 1.00762 0.73777 0.73420 0.71488 1.93466 1.31351 1.86046 1.85750 1.93447 1.81507 1.56788 1.67342 1.29814 1.23388 1.16528 1.17604 1.20308 0.90872 0.97318 0.92202 1.20465 1.08334 0.93284 1.06064 1.20840 0.95520 0.96331 0.94858 1.21358 1.03162 0.97935 1.00488 1.17032 0.87929 0.89386 0.89273 1.21540 1.12459 1.15081 1.06767 0.86483 1.27104 1.02250 0.91670 0.97307 1.70465 1.01062 1.34420 1.33543 0.83755 0.73878 0.78074 0.76438 1.19573 1.19448 1.19239 0.94048 0.89579 0.94473 0.92241 0.92420 0.92578 0.92100 0.92142 0.93195 0.88538 0.88790 0.75917 0.87294 0.88529 0.88649 0.87127 0.88190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 101.05 1.11 1.44 16 2 O -0.38 -5.43 10.67 -40.08 -0.43 -5.86 16 3 C 0.06 0.72 6.32 37.16 0.23 0.96 16 4 C 0.06 0.74 6.32 37.16 0.23 0.98 16 5 O -0.37 -5.96 10.12 -40.08 -0.41 -6.37 16 6 C 0.05 0.77 6.13 37.16 0.23 1.00 16 7 C 0.13 2.37 4.74 -4.04 -0.02 2.35 16 8 N -1.12 -21.01 5.97 -10.62 -0.06 -21.07 16 9 S 2.71 59.76 5.44 -107.50 -0.58 59.17 16 10 O -0.98 -23.50 15.00 -57.17 -0.86 -24.36 16 11 O -1.00 -23.07 16.97 -57.17 -0.97 -24.04 16 12 C -0.78 -18.72 5.97 -38.87 -0.23 -18.96 16 13 C 0.01 0.30 9.54 -39.66 -0.38 -0.08 16 14 C -0.26 -5.75 10.05 -39.29 -0.39 -6.14 16 15 C -0.06 -1.26 10.02 -39.66 -0.40 -1.66 16 16 C -0.21 -5.09 7.89 -38.87 -0.31 -5.40 16 17 C 0.17 4.21 5.20 -106.82 -0.56 3.66 16 18 C -0.53 -12.80 4.73 -37.74 -0.18 -12.98 16 19 H 0.12 2.84 4.14 -52.49 -0.22 2.62 16 20 C 0.04 0.95 4.26 -17.34 -0.07 0.88 16 21 N -0.77 -18.52 12.41 55.55 0.69 -17.83 16 22 Si 1.06 19.93 29.99 -169.99 -5.10 14.83 16 23 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 25 H -0.27 -4.62 7.11 56.52 0.40 -4.22 16 26 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 35 H 0.10 2.06 5.84 -51.93 -0.30 1.76 16 36 H 0.09 1.77 6.28 -51.93 -0.33 1.44 16 37 H 0.41 6.76 8.51 -34.46 -0.29 6.47 16 38 H 0.11 2.33 7.32 -52.49 -0.38 1.94 16 39 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 40 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.11 2.69 6.65 -52.49 -0.35 2.34 16 42 H 0.30 7.55 6.58 -40.82 -0.27 7.28 16 LS Contribution 354.78 15.07 5.35 5.35 Total: -1.00 -30.66 354.78 -8.69 -39.35 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -5.59 Total: 14.77 kcal Atomic # 6 Polarization: -33.22 SS G_CDS: -0.73 Total: -33.95 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.63 Total: -38.90 kcal Atomic # 8 Polarization: -57.96 SS G_CDS: -2.66 Total: -60.62 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.10 Total: 14.83 kcal Atomic # 16 Polarization: 59.76 SS G_CDS: -0.58 Total: 59.17 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -30.66 -8.69 -39.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601317891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.084 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds