Wall clock time and date at job start Tue Mar 31 2020 05:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42893 * 113.99936 * 2 1 4 4 C 1.52996 * 109.47087 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47164 * 60.00418 * 4 3 2 6 6 O 1.42901 * 109.47353 * 299.99716 * 4 3 2 7 7 C 1.53005 * 109.47077 * 180.02562 * 4 3 2 8 8 N 1.46505 * 109.47274 * 185.00009 * 7 4 3 9 9 S 1.65594 * 120.00134 * 162.84194 * 8 7 4 10 10 O 1.42103 * 106.40116 * 311.81815 * 9 8 7 11 11 O 1.42101 * 106.40161 * 178.90086 * 9 8 7 12 12 C 1.76195 * 107.21996 * 65.36031 * 9 8 7 13 13 C 1.37643 * 120.12667 * 245.28451 * 12 9 8 14 14 C 1.38617 * 120.24525 * 179.70161 * 13 12 9 15 15 C 1.38655 * 120.50308 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.24796 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12958 * 65.00618 * 12 9 8 18 18 C 1.41401 * 120.23951 * 0.25612 * 17 12 9 19 19 H 1.07997 * 120.00056 * 329.14351 * 18 17 12 20 20 C 1.39950 * 119.99513 * 149.14545 * 18 17 12 21 21 N 1.30816 * 120.00275 * 345.86762 * 20 18 17 22 22 Si 1.86799 * 119.99448 * 165.87109 * 20 18 17 23 23 H 1.48497 * 109.47754 * 59.99931 * 22 20 18 24 24 H 1.48502 * 109.47050 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.47005 * 299.99599 * 22 20 18 26 26 H 1.09001 * 109.47408 * 299.99423 * 1 2 3 27 27 H 1.09001 * 109.47282 * 60.00278 * 1 2 3 28 28 H 1.09004 * 109.47123 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47117 * 60.00302 * 3 2 1 30 30 H 1.09001 * 109.47517 * 299.99930 * 3 2 1 31 31 H 1.09007 * 109.46865 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.46882 * 299.99699 * 5 4 3 33 33 H 1.08994 * 109.47269 * 59.99873 * 5 4 3 34 34 H 0.96696 * 114.00215 * 300.00325 * 6 4 3 35 35 H 1.09004 * 109.47322 * 64.99716 * 7 4 3 36 36 H 1.09000 * 109.47003 * 305.00100 * 7 4 3 37 37 H 0.96998 * 119.99612 * 342.84364 * 8 7 4 38 38 H 1.07995 * 119.87986 * 359.72460 * 13 12 9 39 39 H 1.08002 * 119.74641 * 180.02562 * 14 13 12 40 40 H 1.08001 * 119.87541 * 179.97438 * 15 14 13 41 41 H 1.08005 * 120.12674 * 179.97438 * 16 15 14 42 42 H 0.97005 * 120.00238 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 3.9863 0.4257 -1.2502 6 8 3.9576 0.4753 1.1659 7 6 4.1577 2.5824 0.0000 8 7 5.6133 2.4690 -0.1210 9 16 6.5119 3.7854 -0.5702 10 8 5.8699 4.3392 -1.7106 11 8 7.8689 3.3637 -0.5704 12 6 6.3628 4.9817 0.7147 13 6 5.7353 6.1824 0.4714 14 6 5.6112 7.1228 1.4822 15 6 6.1168 6.8668 2.7476 16 6 6.7488 5.6738 3.0132 17 6 6.8796 4.7111 1.9951 18 6 7.5258 3.4809 2.2568 19 1 7.2253 2.5895 1.7263 20 6 8.5548 3.4185 3.2034 21 7 9.1075 4.5200 3.6422 22 14 9.1388 1.7624 3.8401 23 1 9.6439 0.9464 2.7069 24 1 10.2290 1.9681 4.8272 25 1 8.0074 1.0561 4.4931 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8900 31 1 5.0730 0.3400 -1.2509 32 1 3.5430 -0.5701 -1.2502 33 1 3.6644 0.9667 -2.1399 34 1 3.7053 0.8999 1.9972 35 1 3.9090 3.0904 0.9318 36 1 3.7666 3.1546 -0.8413 37 1 6.0507 1.6227 0.0620 38 1 5.3379 6.3924 -0.5105 39 1 5.1170 8.0621 1.2824 40 1 6.0149 7.6069 3.5275 41 1 7.1423 5.4765 3.9995 42 1 9.8205 4.4768 4.2986 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601355021.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:46 Heat of formation + Delta-G solvation = -181.699870 kcal Electronic energy + Delta-G solvation = -27281.799278 eV Core-core repulsion = 23352.552082 eV Total energy + Delta-G solvation = -3929.247196 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.08554 -39.36652 -38.05724 -37.84769 -36.65627 -35.68138 -35.29673 -32.36367 -31.96210 -31.37109 -28.33230 -27.55200 -27.27862 -25.57505 -23.42692 -22.94265 -21.51579 -20.25834 -19.48507 -18.58487 -18.48562 -17.69576 -17.21884 -17.05073 -16.92535 -16.60269 -16.06058 -15.82528 -15.67958 -15.37481 -15.03941 -14.90807 -14.44095 -14.35754 -14.02065 -13.65793 -13.29995 -13.23564 -13.01353 -12.99618 -12.94262 -12.88414 -12.82600 -12.76654 -12.67590 -12.46055 -12.39472 -12.16552 -11.63872 -11.62220 -11.18917 -11.12376 -10.91751 -10.57956 -10.25624 -9.82834 -9.41619 -8.80304 -6.59234 -0.16853 0.53933 0.98309 1.37879 1.48409 1.52805 2.17160 2.28782 2.63335 2.80234 3.00433 3.41350 3.47526 3.75723 3.81958 3.89395 3.98991 4.34237 4.40782 4.44606 4.49151 4.50997 4.59683 4.60943 4.71519 4.78114 4.87746 4.89663 4.99107 5.03953 5.09735 5.13924 5.30575 5.33618 5.53218 5.71485 5.81634 6.00577 6.09645 6.17705 6.25598 6.48167 6.69693 6.83731 6.87349 8.17959 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.004900 C = 0.004272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.830027 B = 5712.802680 C = 6552.784398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.037 3.963 4 C 0.135 3.865 5 C -0.139 4.139 6 O -0.560 6.560 7 C 0.095 3.905 8 N -1.103 6.103 9 S 2.721 3.279 10 O -1.006 7.006 11 O -1.001 7.001 12 C -0.791 4.791 13 C -0.015 4.015 14 C -0.249 4.249 15 C -0.074 4.074 16 C -0.184 4.184 17 C 0.167 3.833 18 C -0.478 4.478 19 H 0.093 0.907 20 C 0.043 3.957 21 N -0.809 5.809 22 Si 0.971 3.029 23 H -0.264 1.264 24 H -0.264 1.264 25 H -0.245 1.245 26 H 0.049 0.951 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.069 0.931 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.388 0.612 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.420 0.580 38 H 0.124 0.876 39 H 0.128 0.872 40 H 0.122 0.878 41 H 0.107 0.893 42 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.977 -5.881 -1.934 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C -0.040 4.040 4 C 0.093 3.907 5 C -0.196 4.196 6 O -0.368 6.368 7 C -0.032 4.032 8 N -0.864 5.864 9 S 2.817 3.183 10 O -0.996 6.996 11 O -0.991 6.991 12 C -0.885 4.885 13 C -0.035 4.035 14 C -0.269 4.269 15 C -0.093 4.093 16 C -0.204 4.204 17 C 0.163 3.837 18 C -0.506 4.506 19 H 0.111 0.889 20 C -0.175 4.175 21 N -0.433 5.433 22 Si 0.791 3.209 23 H -0.189 1.189 24 H -0.188 1.188 25 H -0.169 1.169 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.100 0.900 34 H 0.237 0.763 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.257 0.743 38 H 0.142 0.858 39 H 0.146 0.854 40 H 0.140 0.860 41 H 0.125 0.875 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.050 -6.125 -3.070 14.739 hybrid contribution 0.195 0.301 1.559 1.600 sum -12.855 -5.824 -1.511 14.194 Atomic orbital electron populations 1.22937 0.79714 1.03675 1.00868 1.87905 1.21044 1.27471 1.95575 1.23182 0.92705 0.85522 1.02641 1.21330 0.91443 0.90025 0.87922 1.21699 1.01797 1.01127 0.95011 1.86556 1.81473 1.52618 1.16124 1.21933 0.79431 0.98346 1.03491 1.55181 1.16129 1.26933 1.88153 1.00332 0.71901 0.72913 0.73142 1.93420 1.77386 1.79556 1.49284 1.93496 1.35456 1.82255 1.87913 1.30190 1.28504 1.15560 1.14230 1.20597 0.92730 0.91780 0.98375 1.20899 1.10767 1.01052 0.94171 1.21239 0.95168 0.95959 0.96905 1.21441 1.03647 0.96021 0.99281 1.17264 0.85151 0.92494 0.88833 1.20079 1.15005 0.95870 1.19647 0.88878 1.26723 0.94920 1.02057 0.93830 1.69818 1.18900 1.31311 1.23231 0.85394 0.79276 0.77371 0.78853 1.18868 1.18809 1.16893 0.93262 0.93047 0.88789 0.91254 0.90651 0.92500 0.91293 0.89991 0.76322 0.90595 0.88863 0.74341 0.85778 0.85390 0.85975 0.87506 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 11.01 113.37 1.25 1.59 16 2 O -0.40 -8.55 9.92 -139.78 -1.39 -9.93 16 3 C 0.04 0.71 5.03 71.98 0.36 1.07 16 4 C 0.14 3.19 0.85 -10.79 -0.01 3.18 16 5 C -0.14 -3.36 8.48 71.98 0.61 -2.75 16 6 O -0.56 -14.52 12.65 -139.78 -1.77 -16.29 16 7 C 0.09 2.55 5.38 86.38 0.47 3.01 16 8 N -1.10 -37.28 4.49 -187.47 -0.84 -38.12 16 9 S 2.72 116.87 4.97 -56.49 -0.28 116.59 16 10 O -1.01 -43.73 16.40 -128.00 -2.10 -45.83 16 11 O -1.00 -50.76 16.60 -128.00 -2.12 -52.89 16 12 C -0.79 -36.85 5.94 22.73 0.14 -36.71 16 13 C -0.02 -0.65 9.54 22.22 0.21 -0.44 16 14 C -0.25 -10.05 10.05 22.46 0.23 -9.82 16 15 C -0.07 -3.14 10.02 22.22 0.22 -2.92 16 16 C -0.18 -8.95 8.65 22.73 0.20 -8.76 16 17 C 0.17 8.42 5.51 -21.29 -0.12 8.30 16 18 C -0.48 -24.02 7.56 23.46 0.18 -23.85 16 19 H 0.09 4.40 5.86 -2.91 -0.02 4.38 16 20 C 0.04 2.08 5.17 85.26 0.44 2.52 16 21 N -0.81 -40.57 11.18 21.83 0.24 -40.32 16 22 Si 0.97 37.10 29.58 68.60 2.03 39.13 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 24 H -0.26 -9.47 7.11 99.48 0.71 -8.77 16 25 H -0.25 -8.75 7.11 99.48 0.71 -8.04 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.06 1.47 6.94 -2.38 -0.02 1.45 16 32 H 0.07 1.67 7.68 -2.39 -0.02 1.65 16 33 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.39 7.90 9.04 -74.06 -0.67 7.23 16 35 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.34 7.70 -2.39 -0.02 2.32 16 37 H 0.42 13.75 7.40 -96.75 -0.72 13.03 16 38 H 0.12 4.82 7.32 -2.91 -0.02 4.80 16 39 H 0.13 4.26 8.06 -2.91 -0.02 4.24 16 40 H 0.12 4.37 8.06 -2.91 -0.02 4.35 16 41 H 0.11 5.34 6.52 -2.91 -0.02 5.32 16 42 H 0.29 13.33 8.30 -92.70 -0.77 12.56 16 Total: -1.00 -67.74 360.17 -2.39 -70.13 By element: Atomic # 1 Polarization: 43.43 SS G_CDS: -0.33 Total: 43.10 kcal Atomic # 6 Polarization: -69.74 SS G_CDS: 4.17 Total: -65.57 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -0.60 Total: -78.44 kcal Atomic # 8 Polarization: -117.56 SS G_CDS: -7.38 Total: -124.94 kcal Atomic # 14 Polarization: 37.10 SS G_CDS: 2.03 Total: 39.13 kcal Atomic # 16 Polarization: 116.87 SS G_CDS: -0.28 Total: 116.59 kcal Total: -67.74 -2.39 -70.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601355021.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.571 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds