Wall clock time and date at job start Tue Mar 31 2020 05:24:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 113.99643 * 2 1 4 4 C 1.53003 * 109.46817 * 179.97438 * 3 2 1 5 5 C 1.53004 * 109.47086 * 304.99968 * 4 3 2 6 6 O 1.42900 * 109.47172 * 64.99709 * 4 3 2 7 7 C 1.53001 * 109.47296 * 184.99657 * 4 3 2 8 8 N 1.46499 * 109.47279 * 179.97438 * 7 4 3 9 9 S 1.65597 * 120.00137 * 165.98597 * 8 7 4 10 10 O 1.42097 * 106.40192 * 176.33514 * 9 8 7 11 11 O 1.42098 * 106.40249 * 309.25481 * 9 8 7 12 12 C 1.76200 * 107.21656 * 62.79492 * 9 8 7 13 13 C 1.37639 * 120.12904 * 245.79787 * 12 9 8 14 14 C 1.38610 * 120.24675 * 179.97438 * 13 12 9 15 15 C 1.38656 * 120.50383 * 0.02566 * 14 13 12 16 16 C 1.37599 * 120.24884 * 0.02562 * 15 14 13 17 17 C 1.40699 * 120.12722 * 65.53044 * 12 9 8 18 18 C 1.41401 * 120.24423 * 359.97438 * 17 12 9 19 19 H 1.07998 * 119.99567 * 331.45740 * 18 17 12 20 20 C 1.39945 * 120.00240 * 151.46299 * 18 17 12 21 21 N 1.30826 * 119.99616 * 348.30957 * 20 18 17 22 22 Si 1.86796 * 120.00342 * 168.31354 * 20 18 17 23 23 H 1.48501 * 109.46828 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47129 * 119.99679 * 22 20 18 25 25 H 1.48494 * 109.47046 * 240.00082 * 22 20 18 26 26 H 1.08998 * 109.47402 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47589 * 300.00217 * 1 2 3 28 28 H 1.09003 * 109.47383 * 59.99785 * 1 2 3 29 29 H 1.08997 * 109.47409 * 60.00055 * 3 2 1 30 30 H 1.09000 * 109.47305 * 299.99370 * 3 2 1 31 31 H 1.09001 * 109.47111 * 179.97438 * 5 4 3 32 32 H 1.08998 * 109.46746 * 299.99819 * 5 4 3 33 33 H 1.09002 * 109.47004 * 60.00120 * 5 4 3 34 34 H 0.96707 * 113.99969 * 59.99872 * 6 4 3 35 35 H 1.08992 * 109.47169 * 300.00035 * 7 4 3 36 36 H 1.09001 * 109.46484 * 60.00202 * 7 4 3 37 37 H 0.97003 * 119.99704 * 345.98360 * 8 7 4 38 38 H 1.07999 * 119.87579 * 0.02562 * 13 12 9 39 39 H 1.07999 * 119.74730 * 179.97438 * 14 13 12 40 40 H 1.08004 * 119.87219 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.12430 * 179.97438 * 16 15 14 42 42 H 0.97003 * 120.00125 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9780 0.3198 1.1826 6 8 3.9658 0.5792 -1.2201 7 6 4.1572 2.5769 0.1263 8 7 5.6177 2.4612 0.1275 9 16 6.5552 3.8077 -0.0970 10 8 7.9046 3.3849 0.0425 11 8 6.0592 4.4523 -1.2622 12 6 6.2335 4.8976 1.2496 13 6 5.6226 6.1105 1.0260 14 6 5.3679 6.9695 2.0836 15 6 5.7250 6.6189 3.3768 16 6 6.3377 5.4119 3.6236 17 6 6.5952 4.5289 2.5584 18 6 7.2177 3.2827 2.8010 19 1 7.0211 2.4448 2.1486 20 6 8.0886 3.1351 3.8865 21 7 8.5066 4.1899 4.5378 22 14 8.6543 1.4321 4.4053 23 1 8.0424 0.4143 3.5137 24 1 10.1338 1.3509 4.3079 25 1 8.2357 1.1772 5.8071 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.6885 1.8464 0.8899 30 1 1.6886 1.8463 -0.8900 31 1 5.0646 0.2334 1.1828 32 1 3.6497 0.7817 2.1137 33 1 3.5350 -0.6721 1.0930 34 1 3.7191 1.0745 -2.0132 35 1 3.8420 3.1930 -0.7157 36 1 3.8289 3.0387 1.0575 37 1 6.0355 1.5958 0.2599 38 1 5.3398 6.3936 0.0229 39 1 4.8885 7.9194 1.8989 40 1 5.5213 7.2959 4.1933 41 1 6.6153 5.1411 4.6315 42 1 9.1099 4.0876 5.2905 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601355022.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:52 Heat of formation + Delta-G solvation = -156.550449 kcal Electronic energy + Delta-G solvation = -27327.671539 eV Core-core repulsion = 23399.514904 eV Total energy + Delta-G solvation = -3928.156635 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.14421 -37.61812 -37.01301 -36.21170 -34.83369 -34.15625 -33.86346 -31.26156 -30.23917 -29.57835 -27.50428 -26.58309 -25.56357 -24.60745 -21.68428 -21.16816 -20.47209 -18.66972 -17.73097 -17.46784 -16.91656 -16.33861 -16.07887 -16.05172 -15.48662 -15.10025 -14.74773 -14.60053 -14.33852 -14.03338 -13.50659 -13.26865 -13.18867 -12.94392 -12.78040 -12.20835 -12.18408 -11.90277 -11.75175 -11.62099 -11.55015 -11.29794 -11.26568 -11.18466 -11.09115 -11.02018 -10.74217 -10.59836 -10.49300 -9.96914 -9.92138 -9.83407 -9.47828 -9.44695 -8.79046 -8.06447 -7.63065 -7.04852 -4.78201 1.51233 2.31048 2.70352 2.97294 3.03450 3.09272 3.45505 3.76887 3.98800 4.31396 4.39167 4.69554 4.76297 4.81231 4.87700 5.13227 5.14119 5.25493 5.29335 5.36404 5.46342 5.59837 5.70794 5.83340 6.01040 6.01597 6.05571 6.21077 6.25948 6.38061 6.40572 6.75748 6.93159 6.96193 7.06271 7.28404 7.46231 7.53248 7.65251 7.72470 7.78333 7.87197 8.26957 8.48409 8.62517 9.87853 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010994 B = 0.005004 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2546.241791 B = 5594.598508 C = 6401.098833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.377 6.377 3 C 0.036 3.964 4 C 0.132 3.868 5 C -0.136 4.136 6 O -0.545 6.545 7 C 0.102 3.898 8 N -1.113 6.113 9 S 2.701 3.299 10 O -0.963 6.963 11 O -1.000 7.000 12 C -0.777 4.777 13 C -0.004 4.004 14 C -0.251 4.251 15 C -0.077 4.077 16 C -0.158 4.158 17 C 0.186 3.814 18 C -0.443 4.443 19 H 0.088 0.912 20 C 0.080 3.920 21 N -0.776 5.776 22 Si 0.915 3.085 23 H -0.253 1.253 24 H -0.268 1.268 25 H -0.270 1.270 26 H 0.084 0.916 27 H 0.040 0.960 28 H 0.039 0.961 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.070 0.930 34 H 0.374 0.626 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.414 0.586 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.125 0.875 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 -5.666 -3.061 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C -0.042 4.042 4 C 0.089 3.911 5 C -0.194 4.194 6 O -0.350 6.350 7 C -0.026 4.026 8 N -0.871 5.871 9 S 2.799 3.201 10 O -0.953 6.953 11 O -0.990 6.990 12 C -0.872 4.872 13 C -0.024 4.024 14 C -0.271 4.271 15 C -0.096 4.096 16 C -0.177 4.177 17 C 0.181 3.819 18 C -0.471 4.471 19 H 0.106 0.894 20 C -0.141 4.141 21 N -0.399 5.399 22 Si 0.738 3.262 23 H -0.177 1.177 24 H -0.193 1.193 25 H -0.195 1.195 26 H 0.103 0.897 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.221 0.779 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.125 0.875 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.143 0.857 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.817 -5.929 -3.224 12.749 hybrid contribution -0.341 0.151 0.742 0.831 sum -11.158 -5.778 -2.482 12.808 Atomic orbital electron populations 1.22756 0.81397 1.02658 0.99886 1.87948 1.19186 1.27039 1.95351 1.23224 0.94356 0.85390 1.01232 1.21384 0.90001 0.92569 0.87125 1.21662 1.02418 1.00235 0.95044 1.86594 1.81096 1.52415 1.14913 1.21656 0.81395 0.96743 1.02811 1.55556 1.14475 1.25533 1.91568 1.01058 0.72751 0.72567 0.73726 1.93549 1.32847 1.81518 1.87387 1.93436 1.81781 1.75819 1.47993 1.29867 1.30559 1.13111 1.13667 1.20247 0.92538 0.92057 0.97513 1.20485 1.12480 1.00637 0.93524 1.20905 0.96919 0.96217 0.95578 1.21523 1.01615 0.94871 0.99722 1.17010 0.84542 0.91688 0.88662 1.19899 1.20753 0.96933 1.09547 0.89383 1.25957 0.94416 0.99315 0.94420 1.69787 1.23195 1.31033 1.15864 0.86120 0.79573 0.81361 0.79124 1.17654 1.19302 1.19468 0.89700 0.94103 0.94218 0.91913 0.92753 0.91406 0.90781 0.91063 0.77851 0.90562 0.90533 0.75030 0.87490 0.88789 0.88851 0.85702 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.41 9.79 -40.09 -0.39 -4.81 16 3 C 0.04 0.38 5.06 37.16 0.19 0.57 16 4 C 0.13 1.67 0.88 -90.62 -0.08 1.59 16 5 C -0.14 -1.81 8.47 37.16 0.31 -1.49 16 6 O -0.54 -7.18 12.81 -40.09 -0.51 -7.69 16 7 C 0.10 1.45 5.30 -4.04 -0.02 1.43 16 8 N -1.11 -19.21 4.85 -10.61 -0.05 -19.27 16 9 S 2.70 58.31 4.96 -107.50 -0.53 57.77 16 10 O -0.96 -23.98 16.52 -57.17 -0.94 -24.92 16 11 O -1.00 -22.29 16.53 -57.17 -0.95 -23.24 16 12 C -0.78 -18.15 5.90 -38.87 -0.23 -18.38 16 13 C 0.00 -0.08 9.54 -39.66 -0.38 -0.46 16 14 C -0.25 -5.36 10.05 -39.29 -0.39 -5.75 16 15 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 16 C -0.16 -3.81 8.66 -38.87 -0.34 -4.15 16 17 C 0.19 4.62 5.55 -106.82 -0.59 4.03 16 18 C -0.44 -10.90 7.63 -37.74 -0.29 -11.18 16 19 H 0.09 2.03 5.82 -52.49 -0.31 1.72 16 20 C 0.08 1.90 5.24 -17.34 -0.09 1.81 16 21 N -0.78 -18.85 10.86 55.55 0.60 -18.24 16 22 Si 0.92 17.88 29.58 -169.99 -5.03 12.85 16 23 H -0.25 -4.83 7.11 56.52 0.40 -4.43 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.95 6.62 -51.93 -0.34 0.60 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.94 7.56 -51.93 -0.39 0.55 16 34 H 0.37 3.73 9.05 45.56 0.41 4.15 16 35 H 0.08 1.01 7.82 -51.93 -0.41 0.61 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 37 H 0.41 6.82 6.93 -34.47 -0.24 6.59 16 38 H 0.11 2.19 7.32 -52.49 -0.38 1.80 16 39 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.09 1.78 8.06 -52.48 -0.42 1.36 16 41 H 0.13 3.05 6.22 -52.49 -0.33 2.73 16 42 H 0.29 6.26 8.30 -40.82 -0.34 5.92 16 LS Contribution 359.28 15.07 5.41 5.41 Total: -1.00 -31.60 359.28 -8.51 -40.11 By element: Atomic # 1 Polarization: 19.66 SS G_CDS: -4.92 Total: 14.74 kcal Atomic # 6 Polarization: -31.53 SS G_CDS: -1.19 Total: -32.73 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: 0.55 Total: -37.51 kcal Atomic # 8 Polarization: -57.86 SS G_CDS: -2.80 Total: -60.65 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 58.31 SS G_CDS: -0.53 Total: 57.77 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.60 -8.51 -40.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601355022.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.442 kcal (2) G-P(sol) polarization free energy of solvation -31.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds