Wall clock time and date at job start Tue Mar 31 2020 06:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30181 * 126.79846 * 2 1 4 4 O 1.20922 * 111.60221 * 180.02562 * 3 2 1 5 5 C 1.34042 * 111.56828 * 359.75946 * 4 3 2 6 6 C 1.35452 * 106.44443 * 0.38428 * 5 4 3 7 7 S 1.76194 * 128.00497 * 179.91448 * 6 5 4 8 8 O 1.42102 * 106.40525 * 1.13270 * 7 6 5 9 9 O 1.42098 * 106.40266 * 228.21475 * 7 6 5 10 10 N 1.65603 * 107.22277 * 114.67481 * 7 6 5 11 11 C 1.46501 * 119.99972 * 64.99467 * 10 7 6 12 12 C 1.52996 * 109.46987 * 165.00297 * 11 10 7 13 13 C 1.53042 * 109.46001 * 295.02831 * 12 11 10 14 14 C 1.53194 * 109.31105 * 178.59895 * 13 12 11 15 15 N 1.46924 * 108.76305 * 54.65805 * 14 13 12 16 16 C 1.36940 * 120.63267 * 126.36247 * 15 14 13 17 17 H 1.08007 * 119.99862 * 331.85938 * 16 15 14 18 18 C 1.38815 * 120.00066 * 151.86123 * 16 15 14 19 19 N 1.31611 * 120.00156 * 343.06064 * 18 16 15 20 20 Si 1.86800 * 119.99883 * 163.06670 * 18 16 15 21 21 H 1.48502 * 109.46989 * 89.99412 * 20 18 16 22 22 H 1.48501 * 109.47284 * 209.99770 * 20 18 16 23 23 H 1.48507 * 109.47339 * 329.99995 * 20 18 16 24 24 C 1.46930 * 118.74149 * 306.38068 * 15 14 13 25 25 C 1.53036 * 109.46047 * 174.97540 * 12 11 10 26 26 H 1.09000 * 109.47328 * 269.97416 * 1 2 3 27 27 H 1.09002 * 109.47409 * 29.97301 * 1 2 3 28 28 H 1.09001 * 109.46990 * 149.98005 * 1 2 3 29 29 H 1.07995 * 126.77622 * 180.28423 * 5 4 3 30 30 H 0.96999 * 119.99892 * 244.99767 * 10 7 6 31 31 H 1.08999 * 109.47185 * 285.00383 * 11 10 7 32 32 H 1.09002 * 109.46952 * 45.00414 * 11 10 7 33 33 H 1.09006 * 109.46029 * 55.00186 * 12 11 10 34 34 H 1.08998 * 109.50189 * 298.56487 * 13 12 11 35 35 H 1.09000 * 109.49671 * 58.66425 * 13 12 11 36 36 H 1.08997 * 109.60099 * 294.87407 * 14 13 12 37 37 H 1.08999 * 109.70508 * 174.50691 * 14 13 12 38 38 H 0.97000 * 119.99991 * 179.97438 * 19 18 16 39 39 H 1.08995 * 109.58615 * 293.82280 * 24 15 14 40 40 H 1.09003 * 109.70511 * 173.46924 * 24 15 14 41 41 H 1.09007 * 109.49744 * 301.33612 * 25 12 11 42 42 H 1.08998 * 109.50114 * 61.43168 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4537 0.7255 -0.0005 5 6 3.6025 -0.6067 0.0043 6 6 2.3540 -1.1320 -0.0006 7 16 1.8924 -2.8324 0.0001 8 8 3.1024 -3.5767 0.0339 9 8 0.9154 -2.9833 -1.0206 10 7 1.1200 -3.1302 1.4344 11 6 -0.1582 -2.4770 1.7274 12 6 -0.8336 -3.1831 2.9047 13 6 -1.1928 -4.6153 2.5023 14 6 -1.8370 -5.3301 3.6943 15 7 -2.9773 -4.5316 4.1642 16 6 -4.2182 -5.0961 4.2937 17 1 -4.5001 -5.9300 3.6678 18 6 -5.1138 -4.5965 5.2293 19 7 -4.6840 -3.8249 6.2051 20 14 -6.9289 -5.0194 5.1033 21 1 -7.2024 -6.2606 5.8714 22 1 -7.7367 -3.9046 5.6601 23 1 -7.2906 -5.2293 3.6784 24 6 -2.7610 -3.1158 4.4922 25 6 -2.1061 -2.4260 3.2914 26 1 -0.3634 -0.0005 1.0276 27 1 -0.3634 0.8902 -0.5134 28 1 -0.3633 -0.8898 -0.5142 29 1 4.5339 -1.1532 0.0093 30 1 1.5139 -3.7370 2.0805 31 1 0.0179 -1.4321 1.9830 32 1 -0.8041 -2.5329 0.8512 33 1 -0.1516 -3.2050 3.7548 34 1 -1.8943 -4.5938 1.6683 35 1 -0.2891 -5.1471 2.2045 36 1 -1.1071 -5.4325 4.4973 37 1 -2.1836 -6.3169 3.3876 38 1 -5.3099 -3.4756 6.8586 39 1 -2.1065 -3.0377 5.3602 40 1 -3.7166 -2.6392 4.7111 41 1 -1.8526 -1.3993 3.5554 42 1 -2.7989 -2.4253 2.4499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601372175.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:38:32 Heat of formation + Delta-G solvation = 2.474537 kcal Electronic energy + Delta-G solvation = -26785.090360 eV Core-core repulsion = 22896.122317 eV Total energy + Delta-G solvation = -3888.968043 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 12.87 seconds Orbital eigenvalues (eV) -45.50157 -38.29192 -37.47520 -36.13639 -35.63284 -35.13804 -32.74098 -32.45195 -30.70779 -29.67790 -29.22236 -26.57068 -24.50973 -23.91785 -22.18753 -21.97042 -21.22050 -19.89490 -19.29051 -18.63979 -18.23089 -17.56828 -16.75094 -16.67011 -16.33276 -15.12265 -14.94496 -14.79422 -14.59991 -14.00941 -13.66269 -13.57863 -13.41740 -13.21852 -12.99764 -12.92762 -12.51063 -12.34016 -12.27488 -12.18215 -12.13136 -11.91409 -11.53628 -11.37853 -11.02178 -10.98795 -10.71539 -10.54260 -10.27185 -10.25647 -10.23833 -9.92594 -9.77458 -9.50254 -9.42038 -8.48368 -6.67975 -5.80596 -3.22582 0.07798 0.66296 1.44777 2.59602 2.85749 3.29748 3.36492 3.43829 3.46399 3.65214 3.85364 4.15666 4.48902 4.61691 4.82887 4.85005 4.95440 5.10302 5.20158 5.27269 5.32023 5.35919 5.41016 5.55428 5.72599 5.76447 5.83980 6.01023 6.13455 6.29300 6.46995 6.55127 6.63082 6.72686 6.77889 6.80267 6.98181 7.33391 7.62761 7.64667 7.78622 8.44019 9.20426 9.83960 10.40471 11.27997 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.023487 B = 0.002921 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.872185 B = 9584.344402 C =10138.505117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.105 3.895 3 N -0.362 5.362 4 O 0.102 5.898 5 C 0.080 3.920 6 C -0.790 4.790 7 S 2.729 3.271 8 O -0.960 6.960 9 O -0.944 6.944 10 N -1.106 6.106 11 C 0.111 3.889 12 C -0.083 4.083 13 C -0.129 4.129 14 C 0.144 3.856 15 N -0.592 5.592 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.904 5.904 20 Si 0.901 3.099 21 H -0.287 1.287 22 H -0.290 1.290 23 H -0.279 1.279 24 C 0.172 3.828 25 C -0.136 4.136 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.236 0.764 30 H 0.422 0.578 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.051 0.949 36 H 0.016 0.984 37 H 0.053 0.947 38 H 0.253 0.747 39 H 0.017 0.983 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.136 7.107 -11.304 20.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.056 4.056 3 N -0.070 5.070 4 O 0.044 5.956 5 C -0.005 4.005 6 C -0.876 4.876 7 S 2.812 3.188 8 O -0.950 6.950 9 O -0.934 6.934 10 N -0.868 5.868 11 C -0.014 4.014 12 C -0.103 4.103 13 C -0.169 4.169 14 C 0.018 3.982 15 N -0.315 5.315 16 C -0.381 4.381 17 H 0.083 0.917 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.731 3.269 21 H -0.214 1.214 22 H -0.216 1.216 23 H -0.205 1.205 24 C 0.046 3.954 25 C -0.176 4.176 26 H 0.118 0.882 27 H 0.109 0.891 28 H 0.119 0.881 29 H 0.252 0.748 30 H 0.258 0.742 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.034 0.966 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.035 0.965 40 H 0.106 0.894 41 H 0.069 0.931 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.928 8.128 -11.974 21.521 hybrid contribution -0.601 -0.523 0.644 1.024 sum 15.328 7.606 -11.330 20.522 Atomic orbital electron populations 1.20850 0.84898 1.06003 1.05079 1.23221 0.98964 0.85975 0.97470 1.73865 0.88972 1.23789 1.20367 1.84882 1.22235 1.22966 1.65529 1.26146 0.99747 0.83692 0.90867 1.33408 1.00805 1.27366 1.26019 1.01060 0.73149 0.71578 0.73024 1.93593 1.46470 1.68391 1.86547 1.93614 1.60342 1.84391 1.55009 1.55386 1.32918 1.59344 1.39200 1.21899 0.82945 0.95794 1.00785 1.21266 0.97417 0.96137 0.95527 1.22084 0.99621 0.94888 1.00260 1.20905 0.90116 0.94182 0.93016 1.44051 1.04874 1.05331 1.77275 1.19183 0.89621 1.15433 1.13909 0.91746 1.25033 0.98948 1.00575 0.95091 1.70023 1.33287 1.37695 1.13820 0.86323 0.85373 0.77501 0.77733 1.21438 1.21582 1.20457 1.20745 0.99742 0.84123 0.90803 1.22234 0.95639 0.97767 1.01964 0.88193 0.89099 0.88107 0.74812 0.74195 0.91880 0.89965 0.91075 0.91950 0.93051 0.96626 0.92831 0.93671 0.96509 0.89410 0.93150 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 8.75 36.01 0.32 -0.68 16 2 C 0.11 1.11 7.31 -82.10 -0.60 0.51 16 3 N -0.36 -4.13 12.07 33.42 0.40 -3.72 16 4 O 0.10 0.97 11.20 17.17 0.19 1.16 16 5 C 0.08 0.60 12.05 29.74 0.36 0.96 16 6 C -0.79 -7.57 6.35 -39.38 -0.25 -7.82 16 7 S 2.73 28.48 5.84 -107.50 -0.63 27.85 16 8 O -0.96 -11.46 17.84 -57.17 -1.02 -12.48 16 9 O -0.94 -12.60 16.59 -57.17 -0.95 -13.55 16 10 N -1.11 -10.73 5.51 -10.61 -0.06 -10.79 16 11 C 0.11 1.21 4.32 -4.04 -0.02 1.20 16 12 C -0.08 -1.17 2.18 -90.58 -0.20 -1.37 16 13 C -0.13 -2.03 5.26 -26.61 -0.14 -2.17 16 14 C 0.14 2.86 6.52 -3.71 -0.02 2.84 16 15 N -0.59 -14.23 2.99 -172.32 -0.52 -14.75 16 16 C -0.25 -6.75 9.58 -15.06 -0.14 -6.89 16 17 H 0.06 1.71 7.89 -52.48 -0.41 1.29 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.90 -25.63 11.19 55.49 0.62 -25.01 16 20 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 24 C 0.17 3.84 5.30 -3.71 -0.02 3.82 16 25 C -0.14 -2.27 5.36 -26.61 -0.14 -2.41 16 26 H 0.10 0.77 6.24 -51.93 -0.32 0.45 16 27 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.10 0.90 6.45 -51.93 -0.33 0.57 16 29 H 0.24 0.74 8.06 -52.49 -0.42 0.31 16 30 H 0.42 3.54 8.37 -34.47 -0.29 3.25 16 31 H 0.06 0.58 5.69 -51.93 -0.30 0.29 16 32 H 0.08 0.90 7.04 -51.93 -0.37 0.54 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 0.68 7.50 -51.93 -0.39 0.29 16 36 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 38 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 2.23 6.06 -51.93 -0.31 1.92 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 348.57 15.07 5.25 5.25 Total: -1.00 -34.03 348.57 -8.33 -42.36 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.66 Total: -0.56 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.95 Total: -12.04 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.45 Total: -54.27 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -1.78 Total: -24.86 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 16 Polarization: 28.48 SS G_CDS: -0.63 Total: 27.85 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.03 -8.33 -42.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601372175.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.839 kcal (2) G-P(sol) polarization free energy of solvation -34.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 12.87 seconds