Wall clock time and date at job start Tue Mar 31 2020 05:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99549 * 2 1 4 4 C 1.53006 * 109.46853 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47295 * 185.00001 * 4 3 2 6 6 C 1.52996 * 109.47344 * 305.00107 * 4 3 2 7 7 C 1.52994 * 109.47097 * 183.41662 * 6 4 3 8 8 O 1.42906 * 109.47352 * 179.67731 * 7 6 4 9 9 N 1.46500 * 109.46735 * 65.00422 * 4 3 2 10 10 S 1.65600 * 120.00229 * 116.05288 * 9 4 3 11 11 O 1.42097 * 106.40328 * 181.27460 * 10 9 4 12 12 O 1.42095 * 106.40375 * 48.35122 * 10 9 4 13 13 C 1.76204 * 107.21434 * 294.81352 * 10 9 4 14 14 C 1.37639 * 120.12892 * 114.57939 * 13 10 9 15 15 C 1.38610 * 120.24473 * 180.31643 * 14 13 10 16 16 C 1.38659 * 120.50618 * 359.67566 * 15 14 13 17 17 C 1.37598 * 120.24580 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12532 * 294.27270 * 13 10 9 19 19 C 1.41396 * 120.24857 * 359.97438 * 18 13 10 20 20 H 1.07999 * 119.99591 * 32.30060 * 19 18 13 21 21 C 1.39946 * 120.00148 * 212.30874 * 19 18 13 22 22 N 1.30824 * 120.00253 * 24.68676 * 21 19 18 23 23 Si 1.86802 * 119.99651 * 204.69098 * 21 19 18 24 24 H 1.48506 * 109.46907 * 179.97438 * 23 21 19 25 25 H 1.48498 * 109.47058 * 299.99459 * 23 21 19 26 26 H 1.48499 * 109.47004 * 59.99798 * 23 21 19 27 27 H 1.08989 * 109.47593 * 300.00368 * 1 2 3 28 28 H 1.09007 * 109.46795 * 60.00714 * 1 2 3 29 29 H 1.09001 * 109.46907 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46934 * 59.99831 * 3 2 1 31 31 H 1.09001 * 109.47345 * 299.99747 * 3 2 1 32 32 H 1.08999 * 109.47534 * 303.42084 * 6 4 3 33 33 H 1.09009 * 109.46955 * 63.41822 * 6 4 3 34 34 H 1.09005 * 109.47330 * 299.67229 * 7 6 4 35 35 H 1.09000 * 109.47237 * 59.67875 * 7 6 4 36 36 H 0.96698 * 113.99985 * 180.02562 * 8 7 6 37 37 H 0.97007 * 119.99691 * 296.04234 * 9 4 3 38 38 H 1.08000 * 119.87441 * 0.02562 * 14 13 10 39 39 H 1.07999 * 119.74777 * 179.69311 * 15 14 13 40 40 H 1.08002 * 119.87691 * 180.02562 * 16 15 14 41 41 H 1.08001 * 120.12860 * 180.02562 * 17 16 15 42 42 H 0.97005 * 119.99576 * 2.17474 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.9784 2.1766 0.0902 6 6 3.9781 0.3199 1.1825 7 6 5.5064 0.2691 1.2331 8 8 5.9200 -0.5325 2.3415 9 7 3.9766 0.5642 -1.2509 10 16 4.9173 1.4190 -2.3125 11 8 5.1472 0.5635 -3.4236 12 8 5.9654 1.9955 -1.5455 13 6 3.9426 2.7597 -2.9100 14 6 4.2941 4.0565 -2.6112 15 6 3.5254 5.1127 -3.0745 16 6 2.3993 4.8773 -3.8486 17 6 2.0325 3.5894 -4.1648 18 6 2.8056 2.5091 -3.7000 19 6 2.4386 1.1815 -4.0193 20 1 2.6368 0.3833 -3.3193 21 6 1.8190 0.9017 -5.2425 22 7 1.9983 1.6989 -6.2642 23 14 0.7356 -0.6101 -5.4164 24 1 0.2009 -0.6794 -6.8001 25 1 1.5364 -1.8282 -5.1331 26 1 -0.3922 -0.5242 -4.4541 27 1 -0.3634 0.5138 0.8898 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6884 1.8464 0.8900 31 1 1.6885 1.8464 -0.8900 32 1 3.5979 0.7493 2.1095 33 1 3.5848 -0.6895 1.0616 34 1 5.8863 -0.1657 0.3086 35 1 5.8999 1.2791 1.3483 36 1 6.8793 -0.6087 2.4355 37 1 3.7178 -0.3476 -1.4578 38 1 5.1695 4.2514 -2.0095 39 1 3.8059 6.1268 -2.8310 40 1 1.8080 5.7080 -4.2046 41 1 1.1553 3.4083 -4.7682 42 1 2.5859 2.4665 -6.1830 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601379469.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:21 Heat of formation + Delta-G solvation = -168.736811 kcal Electronic energy + Delta-G solvation = -27907.080514 eV Core-core repulsion = 23978.395439 eV Total energy + Delta-G solvation = -3928.685075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -38.41990 -37.85931 -36.88138 -36.30326 -35.19076 -34.91717 -34.08573 -30.56240 -30.19179 -29.56028 -28.32656 -25.89475 -25.36755 -22.95133 -21.86903 -21.31048 -20.79639 -18.89643 -18.29388 -17.31825 -17.06279 -16.28828 -16.15585 -15.75870 -15.39537 -15.05981 -14.88844 -14.72464 -14.17175 -14.09512 -13.67866 -13.66455 -13.37874 -12.76090 -12.60746 -12.42246 -12.24844 -11.84342 -11.63187 -11.55948 -11.28548 -11.24227 -11.17759 -11.10565 -11.03455 -10.96521 -10.68476 -10.56156 -10.51103 -9.89473 -9.83561 -9.58617 -9.45022 -9.22868 -8.89560 -8.27608 -7.85212 -7.51827 -4.86305 1.43820 2.16201 2.60129 3.06400 3.14566 3.25480 3.78552 3.86048 3.98185 4.21986 4.31278 4.64852 4.99857 5.09500 5.17429 5.26143 5.38025 5.44071 5.52491 5.55079 5.57896 5.65395 5.77591 5.82139 5.84994 5.95973 5.99972 6.08710 6.23065 6.26900 6.47232 6.59201 6.83312 7.08206 7.23036 7.31091 7.32183 7.48003 7.56042 7.60712 7.68610 7.78395 7.93524 8.30717 8.53788 9.77853 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.006153 C = 0.005154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.118266 B = 4549.817502 C = 5430.967816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.382 6.382 3 C 0.049 3.951 4 C 0.169 3.831 5 H 0.101 0.899 6 C -0.120 4.120 7 C 0.073 3.927 8 O -0.579 6.579 9 N -1.112 6.112 10 S 2.698 3.302 11 O -0.962 6.962 12 O -0.998 6.998 13 C -0.782 4.782 14 C 0.011 3.989 15 C -0.263 4.263 16 C -0.056 4.056 17 C -0.207 4.207 18 C 0.166 3.834 19 C -0.498 4.498 20 H 0.090 0.910 21 C 0.044 3.956 22 N -0.772 5.772 23 Si 1.063 2.937 24 H -0.271 1.271 25 H -0.268 1.268 26 H -0.271 1.271 27 H 0.035 0.965 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.377 0.623 37 H 0.417 0.583 38 H 0.109 0.891 39 H 0.097 0.903 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.807 -1.541 10.607 10.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C -0.029 4.029 4 C 0.061 3.939 5 H 0.118 0.882 6 C -0.159 4.159 7 C -0.004 4.004 8 O -0.385 6.385 9 N -0.868 5.868 10 S 2.795 3.205 11 O -0.953 6.953 12 O -0.988 6.988 13 C -0.876 4.876 14 C -0.009 4.009 15 C -0.283 4.283 16 C -0.075 4.075 17 C -0.227 4.227 18 C 0.161 3.839 19 C -0.525 4.525 20 H 0.108 0.892 21 C -0.181 4.181 22 N -0.393 5.393 23 Si 0.885 3.115 24 H -0.195 1.195 25 H -0.193 1.193 26 H -0.196 1.196 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.223 0.777 37 H 0.251 0.749 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.114 0.886 41 H 0.125 0.875 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.336 -2.604 9.388 10.018 hybrid contribution 0.554 1.528 0.695 1.768 sum -1.781 -1.076 10.083 10.296 Atomic orbital electron populations 1.22708 0.81411 1.02406 0.99931 1.87830 1.19318 1.27502 1.95412 1.23011 0.93377 0.85313 1.01225 1.20597 0.92477 0.96972 0.83888 0.88154 1.21732 0.94141 1.02353 0.97684 1.22240 0.95554 0.94269 0.88354 1.86417 1.27540 1.73543 1.50960 1.55734 1.72238 1.27084 1.31739 1.01184 0.73116 0.73832 0.72379 1.93554 1.84690 1.66339 1.50688 1.93450 1.53806 1.79557 1.72010 1.29899 1.17114 1.12021 1.28615 1.20341 0.95581 0.91667 0.93316 1.20451 1.00931 0.97042 1.09921 1.20838 0.95387 0.95975 0.95273 1.21289 1.01533 0.92506 1.07393 1.16989 0.86854 0.93137 0.86968 1.20879 1.33133 0.93766 1.04701 0.89200 1.27092 0.96094 1.03521 0.91394 1.70474 1.26291 1.11719 1.30783 0.83662 0.76171 0.74042 0.77626 1.19548 1.19291 1.19645 0.94625 0.93662 0.89960 0.92932 0.91227 0.90633 0.89759 0.93377 0.93063 0.77705 0.74856 0.87268 0.88524 0.88637 0.87512 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 101.05 1.11 1.50 16 2 O -0.38 -5.57 9.84 -35.23 -0.35 -5.92 16 3 C 0.05 0.70 5.77 37.16 0.21 0.92 16 4 C 0.17 2.51 2.73 -67.93 -0.19 2.32 16 5 H 0.10 1.46 7.60 -51.93 -0.39 1.06 16 6 C -0.12 -1.62 5.01 -26.74 -0.13 -1.76 16 7 C 0.07 1.02 6.92 37.15 0.26 1.28 16 8 O -0.58 -7.53 13.66 -35.23 -0.48 -8.01 16 9 N -1.11 -19.08 3.88 -4.89 -0.02 -19.10 16 10 S 2.70 56.76 4.86 -107.50 -0.52 56.24 16 11 O -0.96 -23.72 16.58 -57.17 -0.95 -24.66 16 12 O -1.00 -21.16 16.48 -57.17 -0.94 -22.10 16 13 C -0.78 -17.71 5.94 -38.87 -0.23 -17.94 16 14 C 0.01 0.23 9.54 -39.66 -0.38 -0.15 16 15 C -0.26 -5.40 10.05 -39.29 -0.39 -5.80 16 16 C -0.06 -1.17 10.02 -39.66 -0.40 -1.57 16 17 C -0.21 -4.80 8.00 -38.87 -0.31 -5.12 16 18 C 0.17 3.98 5.14 -106.82 -0.55 3.44 16 19 C -0.50 -12.08 7.41 -37.74 -0.28 -12.36 16 20 H 0.09 2.08 6.06 -52.49 -0.32 1.76 16 21 C 0.04 1.06 4.91 -17.34 -0.09 0.97 16 22 N -0.77 -19.52 12.68 55.55 0.70 -18.81 16 23 Si 1.06 20.54 30.00 -169.99 -5.10 15.45 16 24 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 25 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 26 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 27 H 0.04 0.37 8.14 -51.94 -0.42 -0.06 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 33 H 0.08 1.19 7.68 -51.92 -0.40 0.79 16 34 H 0.05 0.71 7.71 -51.93 -0.40 0.31 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.38 3.22 9.12 45.56 0.42 3.64 16 37 H 0.42 6.83 8.73 -34.47 -0.30 6.53 16 38 H 0.11 2.14 7.32 -52.49 -0.38 1.76 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.10 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.11 2.50 7.02 -52.49 -0.37 2.13 16 42 H 0.30 7.88 6.78 -40.82 -0.28 7.60 16 LS Contribution 362.88 15.07 5.47 5.47 Total: -1.00 -30.61 362.88 -8.58 -39.19 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: -1.36 Total: -34.26 kcal Atomic # 7 Polarization: -38.60 SS G_CDS: 0.69 Total: -37.92 kcal Atomic # 8 Polarization: -57.98 SS G_CDS: -2.72 Total: -60.69 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.10 Total: 15.45 kcal Atomic # 16 Polarization: 56.76 SS G_CDS: -0.52 Total: 56.24 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.61 -8.58 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601379469.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.551 kcal (2) G-P(sol) polarization free energy of solvation -30.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds