Wall clock time and date at job start Tue Mar 31 2020 05:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99575 * 2 1 4 4 C 1.52998 * 109.47025 * 179.97438 * 3 2 1 5 5 H 1.08999 * 109.47433 * 54.99636 * 4 3 2 6 6 O 1.42901 * 109.46856 * 295.00159 * 4 3 2 7 7 C 1.52999 * 109.47352 * 175.00167 * 4 3 2 8 8 C 1.52994 * 109.47225 * 185.00118 * 7 4 3 9 9 N 1.46506 * 109.47339 * 179.97438 * 8 7 4 10 10 S 1.65593 * 120.00027 * 163.54261 * 9 8 7 11 11 O 1.42098 * 106.40580 * 309.34093 * 10 9 8 12 12 O 1.42108 * 106.40042 * 176.41860 * 10 9 8 13 13 C 1.76196 * 107.21865 * 62.88511 * 10 9 8 14 14 C 1.37644 * 120.12501 * 244.62403 * 13 10 9 15 15 C 1.38615 * 120.24901 * 179.97438 * 14 13 10 16 16 C 1.38656 * 120.49881 * 0.02562 * 15 14 13 17 17 C 1.37597 * 120.25049 * 0.02562 * 16 15 14 18 18 C 1.40692 * 120.13184 * 64.34676 * 13 10 9 19 19 C 1.41395 * 120.24273 * 359.97438 * 18 13 10 20 20 H 1.08006 * 120.00192 * 331.39649 * 19 18 13 21 21 C 1.39951 * 120.00135 * 151.40422 * 19 18 13 22 22 N 1.30822 * 119.99846 * 348.39596 * 21 19 18 23 23 Si 1.86799 * 119.99846 * 168.40248 * 21 19 18 24 24 H 1.48492 * 109.47525 * 359.97438 * 23 21 19 25 25 H 1.48506 * 109.46759 * 119.99858 * 23 21 19 26 26 H 1.48498 * 109.47014 * 239.99403 * 23 21 19 27 27 H 1.09004 * 109.46747 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47511 * 299.99901 * 1 2 3 29 29 H 1.09000 * 109.47102 * 59.99992 * 1 2 3 30 30 H 1.09000 * 109.47131 * 60.00280 * 3 2 1 31 31 H 1.08993 * 109.47589 * 299.99692 * 3 2 1 32 32 H 0.96696 * 114.00063 * 299.99650 * 6 4 3 33 33 H 1.09006 * 109.47083 * 64.99957 * 7 4 3 34 34 H 1.08995 * 109.46792 * 305.00184 * 7 4 3 35 35 H 1.08996 * 109.47708 * 59.99748 * 8 7 4 36 36 H 1.09005 * 109.47281 * 299.99779 * 8 7 4 37 37 H 0.97000 * 119.99313 * 343.54378 * 9 8 7 38 38 H 1.07999 * 119.87934 * 359.97438 * 14 13 10 39 39 H 1.07991 * 119.75128 * 179.97438 * 15 14 13 40 40 H 1.08007 * 119.87645 * 180.02562 * 16 15 14 41 41 H 1.07999 * 120.12789 * 179.97438 * 17 16 15 42 42 H 0.97001 * 119.99922 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8515 0.5683 -0.8409 6 8 3.9648 0.5798 1.2220 7 6 4.1573 2.5770 -0.1250 8 6 5.6767 2.4476 -0.2498 9 7 6.2721 3.7807 -0.3708 10 16 7.8946 3.9892 -0.1137 11 8 8.1866 3.3699 1.1314 12 8 8.1716 5.3562 -0.3857 13 6 8.7419 3.0556 -1.3446 14 6 9.5279 1.9857 -0.9810 15 6 10.1952 1.2491 -1.9472 16 6 10.0800 1.5803 -3.2887 17 6 9.3006 2.6464 -3.6751 18 6 8.6131 3.3971 -2.7033 19 6 7.8034 4.4902 -3.0892 20 1 6.9544 4.7733 -2.4846 21 6 8.1020 5.2052 -4.2547 22 7 9.2448 5.0168 -4.8628 23 14 6.8688 6.4285 -4.9417 24 1 5.6632 6.4557 -4.0752 25 1 7.4818 7.7806 -4.9803 26 1 6.4809 6.0214 -6.3161 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6887 1.8464 -0.8899 32 1 3.7175 1.0754 2.0146 33 1 3.9142 3.1648 0.7602 34 1 3.7610 3.0733 -1.0108 35 1 5.9198 1.8598 -1.1349 36 1 6.0730 1.9512 0.6361 37 1 5.7159 4.5411 -0.6014 38 1 9.6251 1.7191 0.0610 39 1 10.8100 0.4115 -1.6529 40 1 10.6040 0.9992 -4.0333 41 1 9.2127 2.9029 -4.7205 42 1 9.4520 5.5127 -5.6704 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601383873.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:28 Heat of formation + Delta-G solvation = -163.351498 kcal Electronic energy + Delta-G solvation = -26477.066107 eV Core-core repulsion = 22548.614556 eV Total energy + Delta-G solvation = -3928.451551 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -38.85920 -37.58644 -37.03715 -36.19686 -34.97414 -34.81635 -33.88123 -31.35139 -30.21705 -29.54416 -28.31225 -26.12336 -25.53558 -22.95739 -21.74050 -21.53283 -21.11875 -18.63912 -17.71219 -17.15652 -16.77730 -16.63682 -16.28357 -16.02850 -15.67623 -15.36601 -15.11758 -14.70667 -14.36839 -14.07138 -13.77143 -13.29665 -13.25824 -13.06486 -12.77174 -12.41747 -12.26574 -11.92313 -11.72213 -11.55625 -11.36418 -11.28527 -11.16675 -11.15414 -11.03295 -10.98340 -10.86920 -10.70598 -10.49373 -10.07888 -9.95176 -9.89478 -9.46361 -9.42705 -8.76274 -8.02515 -7.59468 -7.03299 -4.76557 1.54565 2.34295 2.72316 2.94819 3.00133 3.09669 3.37459 3.75331 3.97608 4.30712 4.40920 4.61495 4.73515 4.83470 4.94400 5.01586 5.05580 5.13825 5.18016 5.28108 5.31092 5.38515 5.61031 5.69350 5.82749 5.97525 6.07340 6.17957 6.25593 6.37940 6.44863 6.77488 6.86066 6.96136 7.09207 7.31299 7.49437 7.54020 7.58440 7.68091 7.82023 7.89509 8.29046 8.49805 8.65529 9.89733 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010975 B = 0.004025 C = 0.003575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2550.739462 B = 6954.741857 C = 7830.314691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.029 3.971 4 C 0.111 3.889 5 H 0.112 0.888 6 O -0.549 6.549 7 C -0.156 4.156 8 C 0.129 3.871 9 N -1.124 6.124 10 S 2.701 3.299 11 O -0.997 6.997 12 O -0.966 6.966 13 C -0.774 4.774 14 C -0.003 4.003 15 C -0.249 4.249 16 C -0.076 4.076 17 C -0.159 4.159 18 C 0.186 3.814 19 C -0.448 4.448 20 H 0.087 0.913 21 C 0.080 3.920 22 N -0.777 5.777 23 Si 0.917 3.083 24 H -0.256 1.256 25 H -0.268 1.268 26 H -0.270 1.270 27 H 0.086 0.914 28 H 0.039 0.961 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.372 0.628 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.067 0.933 36 H 0.082 0.918 37 H 0.409 0.591 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.125 0.875 42 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.246 -3.826 4.048 15.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.300 6.300 3 C -0.048 4.048 4 C 0.051 3.949 5 H 0.130 0.870 6 O -0.354 6.354 7 C -0.195 4.195 8 C 0.002 3.998 9 N -0.880 5.880 10 S 2.799 3.201 11 O -0.988 6.988 12 O -0.956 6.956 13 C -0.869 4.869 14 C -0.023 4.023 15 C -0.270 4.270 16 C -0.095 4.095 17 C -0.179 4.179 18 C 0.182 3.818 19 C -0.476 4.476 20 H 0.105 0.895 21 C -0.141 4.141 22 N -0.400 5.400 23 Si 0.740 3.260 24 H -0.179 1.179 25 H -0.193 1.193 26 H -0.195 1.195 27 H 0.104 0.896 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.242 0.758 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.143 0.857 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -13.285 -3.980 4.188 14.487 hybrid contribution -1.027 1.122 -0.909 1.772 sum -14.312 -2.858 3.279 14.958 Atomic orbital electron populations 1.22759 0.81288 1.02786 0.99816 1.87970 1.19376 1.27306 1.95344 1.23354 0.95242 0.85290 1.00918 1.21903 0.89906 0.94110 0.89028 0.87042 1.86669 1.80877 1.52623 1.15197 1.22419 0.96397 0.96989 1.03709 1.21022 0.92300 0.83902 1.02570 1.55683 1.28203 1.15035 1.89117 1.01049 0.71892 0.73722 0.73462 1.93450 1.83909 1.78811 1.42598 1.93543 1.82883 1.33143 1.86051 1.29870 1.25680 1.20240 1.11160 1.20269 0.92395 0.91751 0.97855 1.20505 1.08814 1.04133 0.93503 1.20914 0.97057 0.96440 0.95104 1.21519 1.00978 0.95392 1.00003 1.17009 0.87392 0.88875 0.88544 1.19875 1.11247 1.09913 1.06572 0.89480 1.25952 0.95386 0.97397 0.95373 1.69788 1.19747 1.34823 1.15659 0.86105 0.80945 0.79829 0.79102 1.17929 1.19336 1.19496 0.89597 0.94220 0.94134 0.93012 0.92255 0.78090 0.90709 0.89943 0.91513 0.89972 0.75757 0.87365 0.88692 0.88807 0.85701 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.38 -4.22 10.67 -40.09 -0.43 -4.65 16 3 C 0.03 0.27 5.57 37.16 0.21 0.47 16 4 C 0.11 1.17 3.25 -26.73 -0.09 1.09 16 5 H 0.11 1.29 8.14 -51.93 -0.42 0.87 16 6 O -0.55 -6.49 12.84 -40.09 -0.51 -7.00 16 7 C -0.16 -1.64 5.04 -26.73 -0.13 -1.77 16 8 C 0.13 1.88 6.10 -4.04 -0.02 1.86 16 9 N -1.12 -18.94 5.05 -10.61 -0.05 -18.99 16 10 S 2.70 58.75 4.95 -107.50 -0.53 58.22 16 11 O -1.00 -22.72 16.50 -57.17 -0.94 -23.67 16 12 O -0.97 -23.88 16.63 -57.17 -0.95 -24.83 16 13 C -0.77 -18.53 5.89 -38.87 -0.23 -18.76 16 14 C 0.00 -0.06 9.53 -39.66 -0.38 -0.44 16 15 C -0.25 -5.50 10.05 -39.29 -0.39 -5.90 16 16 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 17 C -0.16 -3.93 8.66 -38.87 -0.34 -4.27 16 18 C 0.19 4.73 5.55 -106.83 -0.59 4.13 16 19 C -0.45 -11.08 7.66 -37.74 -0.29 -11.37 16 20 H 0.09 1.99 5.76 -52.48 -0.30 1.69 16 21 C 0.08 1.90 5.24 -17.34 -0.09 1.81 16 22 N -0.78 -19.01 10.86 55.55 0.60 -18.41 16 23 Si 0.92 17.70 29.58 -169.99 -5.03 12.68 16 24 H -0.26 -4.76 7.11 56.52 0.40 -4.36 16 25 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 26 H -0.27 -5.00 7.11 56.52 0.40 -4.59 16 27 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.37 3.02 9.04 45.56 0.41 3.43 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.08 1.26 7.46 -51.93 -0.39 0.88 16 37 H 0.41 6.02 8.45 -34.47 -0.29 5.73 16 38 H 0.11 2.31 7.33 -52.49 -0.38 1.92 16 39 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.09 1.84 8.06 -52.48 -0.42 1.42 16 41 H 0.13 3.11 6.22 -52.49 -0.33 2.78 16 42 H 0.29 6.29 8.30 -40.82 -0.34 5.95 16 LS Contribution 363.92 15.07 5.48 5.48 Total: -1.00 -32.70 363.92 -9.06 -41.76 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.06 Total: 13.34 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: -1.64 Total: -33.93 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.55 Total: -37.40 kcal Atomic # 8 Polarization: -57.31 SS G_CDS: -2.84 Total: -60.15 kcal Atomic # 14 Polarization: 17.70 SS G_CDS: -5.03 Total: 12.68 kcal Atomic # 16 Polarization: 58.75 SS G_CDS: -0.53 Total: 58.22 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -32.70 -9.06 -41.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383873.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.591 kcal (2) G-P(sol) polarization free energy of solvation -32.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds