Wall clock time and date at job start Tue Mar 31 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42900 * 114.00341 * 2 1 4 4 C 1.53006 * 109.47479 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.46557 * 305.00376 * 4 3 2 6 6 O 1.42899 * 109.46848 * 64.99885 * 4 3 2 7 7 C 1.52998 * 109.47129 * 185.00142 * 4 3 2 8 8 C 1.52995 * 109.46881 * 174.99728 * 7 4 3 9 9 N 1.46506 * 109.47107 * 179.97438 * 8 7 4 10 10 S 1.65604 * 119.99824 * 163.40351 * 9 8 7 11 11 O 1.42098 * 106.39654 * 179.50077 * 10 9 8 12 12 O 1.42100 * 106.40348 * 312.41851 * 10 9 8 13 13 C 1.76199 * 107.22101 * 65.96232 * 10 9 8 14 14 C 1.37640 * 120.12918 * 112.48328 * 13 10 9 15 15 C 1.38611 * 120.24549 * 179.97438 * 14 13 10 16 16 C 1.38649 * 120.50564 * 0.02832 * 15 14 13 17 17 C 1.37597 * 120.24712 * 0.02562 * 16 15 14 18 18 C 1.40701 * 120.12649 * 292.21793 * 13 10 9 19 19 C 1.41396 * 120.24250 * 359.97438 * 18 13 10 20 20 H 1.08001 * 120.00437 * 327.65285 * 19 18 13 21 21 C 1.39945 * 119.99928 * 147.65152 * 19 18 13 22 22 N 1.30822 * 120.00330 * 164.68420 * 21 19 18 23 23 Si 1.86801 * 119.99982 * 344.68008 * 21 19 18 24 24 H 1.48502 * 109.47011 * 93.54495 * 23 21 19 25 25 H 1.48496 * 109.47438 * 213.54764 * 23 21 19 26 26 H 1.48503 * 109.47230 * 333.54658 * 23 21 19 27 27 H 1.08993 * 109.47518 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47220 * 299.99881 * 1 2 3 29 29 H 1.09004 * 109.47309 * 59.99450 * 1 2 3 30 30 H 1.08998 * 109.46795 * 60.00159 * 3 2 1 31 31 H 1.09000 * 109.47331 * 300.00433 * 3 2 1 32 32 H 0.96705 * 113.99536 * 60.00773 * 6 4 3 33 33 H 1.09001 * 109.46868 * 55.00439 * 7 4 3 34 34 H 1.08990 * 109.47088 * 295.00048 * 7 4 3 35 35 H 1.09004 * 109.47192 * 60.00326 * 8 7 4 36 36 H 1.08998 * 109.47820 * 300.00200 * 8 7 4 37 37 H 0.96998 * 119.99661 * 343.40123 * 9 8 7 38 38 H 1.07994 * 119.87511 * 0.02562 * 14 13 10 39 39 H 1.08001 * 119.74558 * 180.02562 * 15 14 13 40 40 H 1.08002 * 119.87582 * 179.97438 * 16 15 14 41 41 H 1.08001 * 120.12652 * 179.97438 * 17 16 15 42 42 H 0.96996 * 120.00256 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8514 0.5681 0.8409 6 8 3.9648 0.5796 -1.2220 7 6 4.1574 2.5768 0.1251 8 6 5.6768 2.4472 0.2499 9 7 6.2724 3.7804 0.3697 10 16 7.8239 3.9473 0.9242 11 8 8.1064 5.3398 0.9126 12 8 7.9210 3.1442 2.0925 13 6 8.8877 3.2138 -0.2736 14 6 9.7478 3.9992 -1.0070 15 6 10.5861 3.4247 -1.9496 16 6 10.5685 2.0552 -2.1655 17 6 9.7161 1.2508 -1.4447 18 6 8.8652 1.8222 -0.4803 19 6 7.9902 1.0046 0.2716 20 1 7.7394 1.2730 1.2872 21 6 7.4492 -0.1524 -0.3003 22 7 6.8930 -1.0596 0.4606 23 14 7.5212 -0.4014 -2.1502 24 1 8.7330 -1.1865 -2.4972 25 1 6.3106 -1.1354 -2.5984 26 1 7.5773 0.9199 -2.8258 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.6886 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.7176 1.0754 -2.0146 33 1 3.7612 3.0731 1.0110 34 1 3.9144 3.1646 -0.7600 35 1 6.0731 1.9509 -0.6359 36 1 5.9199 1.8594 1.1350 37 1 5.7580 4.5652 0.1242 38 1 9.7701 5.0670 -0.8468 39 1 11.2580 4.0485 -2.5202 40 1 11.2257 1.6183 -2.9028 41 1 9.7037 0.1843 -1.6147 42 1 6.5177 -1.8614 0.0642 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601383874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:43 Heat of formation + Delta-G solvation = -155.215288 kcal Electronic energy + Delta-G solvation = -27519.948639 eV Core-core repulsion = 23591.849901 eV Total energy + Delta-G solvation = -3928.098738 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -38.63642 -37.87083 -36.83634 -36.30618 -34.93589 -34.76588 -33.70716 -31.12799 -30.64976 -30.06309 -28.13206 -25.98004 -25.37407 -22.70672 -22.06147 -21.31770 -21.04307 -18.56732 -17.66843 -17.22437 -16.71917 -16.47718 -16.16436 -16.06541 -15.58470 -15.21915 -14.98836 -14.61085 -14.21548 -14.17589 -13.74977 -13.49129 -13.26855 -12.93672 -12.72076 -12.31832 -12.17320 -12.01865 -11.81424 -11.56451 -11.32168 -11.28464 -11.21229 -11.04930 -11.00274 -10.83321 -10.60965 -10.58584 -10.17623 -9.92499 -9.85285 -9.74288 -9.45644 -9.21804 -8.63408 -8.20968 -7.77687 -7.11069 -4.80311 1.50648 2.12182 2.57660 3.02908 3.19315 3.23370 3.57058 3.85883 4.01460 4.32142 4.58351 4.66693 4.85032 5.07264 5.13695 5.15719 5.18276 5.24628 5.34557 5.35493 5.46778 5.51541 5.69433 5.86408 5.88375 5.95401 6.18270 6.22688 6.31764 6.45405 6.59968 6.69967 6.88462 7.00631 7.05438 7.13557 7.27564 7.47209 7.60164 7.66635 7.88262 7.89130 8.21385 8.36426 8.58776 9.85605 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013488 B = 0.005254 C = 0.004232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2075.455180 B = 5328.350915 C = 6614.680134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.378 6.378 3 C 0.031 3.969 4 C 0.113 3.887 5 H 0.115 0.885 6 O -0.540 6.540 7 C -0.159 4.159 8 C 0.128 3.872 9 N -1.123 6.123 10 S 2.708 3.292 11 O -1.000 7.000 12 O -0.968 6.968 13 C -0.772 4.772 14 C 0.018 3.982 15 C -0.261 4.261 16 C -0.046 4.046 17 C -0.233 4.233 18 C 0.161 3.839 19 C -0.464 4.464 20 H 0.134 0.866 21 C 0.097 3.903 22 N -0.764 5.764 23 Si 0.907 3.093 24 H -0.275 1.275 25 H -0.277 1.277 26 H -0.245 1.245 27 H 0.084 0.916 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.365 0.635 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.404 0.596 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.786 3.279 -4.122 12.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.297 6.297 3 C -0.047 4.047 4 C 0.053 3.947 5 H 0.133 0.867 6 O -0.343 6.343 7 C -0.199 4.199 8 C 0.003 3.997 9 N -0.880 5.880 10 S 2.804 3.196 11 O -0.991 6.991 12 O -0.958 6.958 13 C -0.867 4.867 14 C -0.002 4.002 15 C -0.282 4.282 16 C -0.065 4.065 17 C -0.253 4.253 18 C 0.156 3.844 19 C -0.490 4.490 20 H 0.152 0.848 21 C -0.128 4.128 22 N -0.384 5.384 23 Si 0.733 3.267 24 H -0.201 1.201 25 H -0.204 1.204 26 H -0.168 1.168 27 H 0.103 0.897 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.211 0.789 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.103 0.897 36 H 0.113 0.887 37 H 0.235 0.765 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.285 2.640 -2.714 10.960 hybrid contribution -0.478 0.351 -2.001 2.087 sum -10.763 2.990 -4.715 12.125 Atomic orbital electron populations 1.22739 0.81632 1.02662 0.99598 1.88006 1.19056 1.27350 1.95273 1.23384 0.95667 0.85153 1.00467 1.21872 0.89216 0.94183 0.89441 0.86730 1.86772 1.80704 1.52099 1.14769 1.22511 0.97734 0.96891 1.02745 1.21699 0.90451 0.82411 1.05125 1.55564 1.32762 1.13717 1.85928 1.00850 0.72361 0.72009 0.74364 1.93452 1.84620 1.32836 1.88149 1.93502 1.85771 1.70133 1.46413 1.29863 1.24388 1.03492 1.28938 1.20369 0.91283 0.97589 0.90987 1.20483 1.07069 0.94769 1.05850 1.20831 0.95839 0.93978 0.95840 1.21252 1.01803 0.98340 1.03871 1.17085 0.89154 0.89437 0.88755 1.20520 1.21713 1.03929 1.02841 0.84827 1.26111 0.92217 0.93375 1.01126 1.69599 1.23929 1.06063 1.38831 0.86380 0.77343 0.80704 0.82309 1.20121 1.20356 1.16803 0.89702 0.94291 0.94387 0.92570 0.93298 0.78920 0.90645 0.91407 0.89691 0.88718 0.76456 0.86975 0.88228 0.88395 0.87628 0.89553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.40 16 2 O -0.38 -5.12 10.67 -40.08 -0.43 -5.55 16 3 C 0.03 0.35 5.57 37.16 0.21 0.56 16 4 C 0.11 1.59 3.25 -26.73 -0.09 1.50 16 5 H 0.11 1.89 8.14 -51.93 -0.42 1.47 16 6 O -0.54 -8.46 12.84 -40.08 -0.51 -8.98 16 7 C -0.16 -2.09 5.04 -26.73 -0.13 -2.23 16 8 C 0.13 2.29 4.21 -4.04 -0.02 2.27 16 9 N -1.12 -19.47 5.99 -10.61 -0.06 -19.54 16 10 S 2.71 57.75 5.44 -107.50 -0.58 57.16 16 11 O -1.00 -22.01 16.97 -57.17 -0.97 -22.98 16 12 O -0.97 -23.57 14.96 -57.17 -0.86 -24.43 16 13 C -0.77 -17.80 5.96 -38.87 -0.23 -18.03 16 14 C 0.02 0.38 9.54 -39.66 -0.38 0.00 16 15 C -0.26 -5.39 10.05 -39.29 -0.39 -5.79 16 16 C -0.05 -0.97 10.02 -39.66 -0.40 -1.37 16 17 C -0.23 -5.44 7.13 -38.87 -0.28 -5.72 16 18 C 0.16 3.92 5.04 -106.82 -0.54 3.38 16 19 C -0.46 -11.49 5.26 -37.74 -0.20 -11.69 16 20 H 0.13 3.56 4.50 -52.49 -0.24 3.32 16 21 C 0.10 2.31 4.66 -17.34 -0.08 2.23 16 22 N -0.76 -18.38 13.93 55.55 0.77 -17.61 16 23 Si 0.91 19.53 24.03 -169.99 -4.08 15.45 16 24 H -0.27 -5.88 6.68 56.52 0.38 -5.50 16 25 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.24 -5.35 6.85 56.52 0.39 -4.97 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.36 4.22 9.05 45.56 0.41 4.63 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 1.67 5.36 -51.93 -0.28 1.39 16 36 H 0.09 1.94 6.06 -51.93 -0.31 1.63 16 37 H 0.40 5.60 8.66 -34.48 -0.30 5.30 16 38 H 0.11 2.22 7.32 -52.49 -0.38 1.83 16 39 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 41 H 0.11 2.42 4.78 -52.49 -0.25 2.17 16 42 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 347.47 15.07 5.24 5.24 Total: -1.00 -31.35 347.47 -7.66 -39.01 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -4.75 Total: 15.71 kcal Atomic # 6 Polarization: -32.08 SS G_CDS: -1.42 Total: -33.49 kcal Atomic # 7 Polarization: -37.86 SS G_CDS: 0.71 Total: -37.15 kcal Atomic # 8 Polarization: -59.16 SS G_CDS: -2.77 Total: -61.93 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.08 Total: 15.45 kcal Atomic # 16 Polarization: 57.75 SS G_CDS: -0.58 Total: 57.16 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.35 -7.66 -39.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601383874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.207 kcal (2) G-P(sol) polarization free energy of solvation -31.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds