Wall clock time and date at job start Tue Mar 31 2020 05:09:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86807 * 119.99535 * 2 1 4 4 H 1.48502 * 109.46924 * 274.00514 * 3 2 1 5 5 H 1.48499 * 109.46898 * 34.00442 * 3 2 1 6 6 H 1.48499 * 109.46935 * 154.00451 * 3 2 1 7 7 C 1.39947 * 120.00337 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99662 * 344.21947 * 7 2 1 9 9 C 1.41394 * 119.99885 * 164.22186 * 7 2 1 10 10 C 1.40742 * 120.24422 * 328.06753 * 9 7 2 11 11 C 1.37597 * 119.74080 * 180.32749 * 10 9 7 12 12 C 1.38656 * 120.25225 * 359.64915 * 11 10 9 13 13 C 1.38613 * 120.49911 * 0.03036 * 12 11 10 14 14 C 1.37643 * 120.24837 * 0.02562 * 13 12 11 15 15 S 1.76205 * 120.12599 * 179.97438 * 14 13 12 16 16 O 1.42100 * 106.40268 * 358.86006 * 15 14 13 17 17 O 1.42097 * 106.39590 * 225.94520 * 15 14 13 18 18 N 1.65602 * 107.21829 * 112.40343 * 15 14 13 19 19 C 1.46497 * 119.99807 * 65.87983 * 18 15 14 20 20 C 1.53000 * 109.46680 * 163.49082 * 19 18 15 21 21 C 1.53002 * 109.46968 * 179.97438 * 20 19 18 22 22 O 1.42896 * 109.47492 * 179.97438 * 21 20 19 23 23 C 1.42896 * 114.00550 * 179.97438 * 22 21 20 24 24 C 1.52999 * 109.47516 * 180.02562 * 23 22 21 25 25 O 1.42898 * 109.47079 * 65.00236 * 24 23 22 26 26 H 0.96990 * 120.00236 * 0.02562 * 1 2 3 27 27 H 1.07993 * 120.12826 * 359.97438 * 10 9 7 28 28 H 1.07999 * 119.87443 * 179.68049 * 11 10 9 29 29 H 1.07995 * 119.74976 * 180.02562 * 12 11 10 30 30 H 1.07999 * 119.87339 * 179.97438 * 13 12 11 31 31 H 0.97001 * 119.99297 * 246.15142 * 18 15 14 32 32 H 1.09008 * 109.46937 * 283.48682 * 19 18 15 33 33 H 1.09000 * 109.47601 * 43.49016 * 19 18 15 34 34 H 1.08996 * 109.47370 * 299.99250 * 20 19 18 35 35 H 1.08995 * 109.47310 * 60.00127 * 20 19 18 36 36 H 1.09008 * 109.47036 * 299.99837 * 21 20 19 37 37 H 1.09000 * 109.47214 * 59.99994 * 21 20 19 38 38 H 1.09004 * 109.46978 * 300.00487 * 23 22 21 39 39 H 1.09005 * 109.46517 * 60.00090 * 23 22 21 40 40 H 1.09001 * 109.47166 * 185.00535 * 24 23 22 41 41 H 1.09006 * 109.46839 * 305.00021 * 24 23 22 42 42 H 0.96701 * 113.99804 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6179 0.0000 4 1 2.4049 2.0954 -1.3967 5 1 1.4844 2.6268 0.7830 6 1 3.5795 1.4174 0.6137 7 6 2.0081 -1.2119 -0.0005 8 1 1.4986 -2.1297 0.2534 9 6 3.3821 -1.2347 -0.3335 10 6 3.9026 -0.3111 -1.2592 11 6 5.2400 -0.3470 -1.5807 12 6 6.0753 -1.2836 -0.9912 13 6 5.5748 -2.1937 -0.0733 14 6 4.2401 -2.1770 0.2626 15 16 3.6072 -3.3358 1.4293 16 8 4.7017 -4.1563 1.8141 17 8 2.4071 -3.8526 0.8708 18 7 3.1658 -2.4822 2.7780 19 6 2.0596 -1.5242 2.7090 20 6 1.5882 -1.1867 4.1249 21 6 0.4334 -0.1857 4.0529 22 8 -0.0073 0.1291 5.3753 23 6 -1.0890 1.0618 5.4209 24 6 -1.4754 1.3238 6.8779 25 8 -0.3916 1.9688 7.5496 26 1 -0.4850 0.8399 -0.0004 27 1 3.2537 0.4191 -1.7196 28 1 5.6407 0.3574 -2.2947 29 1 7.1238 -1.3042 -1.2492 30 1 6.2345 -2.9191 0.3795 31 1 3.6423 -2.6137 3.6126 32 1 2.3972 -0.6146 2.2119 33 1 1.2349 -1.9613 2.1460 34 1 1.2507 -2.0961 4.6219 35 1 2.4129 -0.7496 4.6879 36 1 0.7713 0.7238 3.5560 37 1 -0.3914 -0.6224 3.4898 38 1 -0.7821 1.9972 4.9529 39 1 -1.9453 0.6514 4.8856 40 1 -2.3563 1.9650 6.9105 41 1 -1.6967 0.3771 7.3710 42 1 -0.5667 2.1655 8.4801 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601387710.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:27 Heat of formation + Delta-G solvation = -158.406560 kcal Electronic energy + Delta-G solvation = -26877.943403 eV Core-core repulsion = 22949.706281 eV Total energy + Delta-G solvation = -3928.237122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -38.28836 -37.95272 -36.68225 -36.36090 -35.32415 -34.89738 -33.85459 -31.26828 -30.75124 -30.13538 -29.14877 -25.58898 -24.37910 -22.54590 -22.18594 -21.34329 -21.01556 -18.56411 -17.83122 -17.77607 -17.12118 -16.78829 -16.31519 -15.93763 -15.45159 -15.21768 -14.77832 -14.62048 -14.28256 -14.20881 -13.94372 -13.54510 -13.44155 -12.96606 -12.91190 -12.41578 -12.21628 -11.97660 -11.83389 -11.46654 -11.32722 -11.25831 -11.19232 -11.06540 -10.86228 -10.83992 -10.80270 -10.68753 -10.23350 -10.21254 -10.04063 -9.54509 -9.46530 -9.34923 -8.68009 -8.28054 -7.86654 -7.25847 -4.91186 1.46908 2.03725 2.47370 2.87982 2.97188 3.08174 3.63074 3.70179 4.00856 4.08836 4.19045 4.63316 4.93418 5.04384 5.05735 5.17594 5.27910 5.39801 5.42698 5.48516 5.60492 5.66299 5.80480 5.87438 5.90114 5.98759 6.15154 6.17409 6.31164 6.38059 6.56860 6.60795 6.82309 6.90420 7.05089 7.20563 7.29197 7.39022 7.45564 7.52041 7.66036 7.78984 8.10203 8.27868 8.47642 9.70445 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013070 B = 0.004402 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2141.843825 B = 6359.687561 C = 7535.150600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.092 3.908 3 Si 0.892 3.108 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.239 1.239 7 C -0.467 4.467 8 H 0.137 0.863 9 C 0.163 3.837 10 C -0.234 4.234 11 C -0.045 4.045 12 C -0.257 4.257 13 C 0.017 3.983 14 C -0.768 4.768 15 S 2.709 3.291 16 O -0.997 6.997 17 O -0.967 6.967 18 N -1.120 6.120 19 C 0.128 3.872 20 C -0.126 4.126 21 C 0.064 3.936 22 O -0.384 6.384 23 C 0.060 3.940 24 C 0.079 3.921 25 O -0.566 6.566 26 H 0.291 0.709 27 H 0.107 0.893 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.114 0.886 31 H 0.406 0.594 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.050 0.950 37 H 0.059 0.941 38 H 0.055 0.945 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.543 4.966 9.492 11.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.131 4.131 3 Si 0.718 3.282 4 H -0.191 1.191 5 H -0.210 1.210 6 H -0.162 1.162 7 C -0.494 4.494 8 H 0.154 0.846 9 C 0.158 3.842 10 C -0.253 4.253 11 C -0.064 4.064 12 C -0.277 4.277 13 C -0.003 4.003 14 C -0.862 4.862 15 S 2.805 3.195 16 O -0.988 6.988 17 O -0.957 6.957 18 N -0.877 5.877 19 C 0.002 3.998 20 C -0.165 4.165 21 C -0.013 4.013 22 O -0.303 6.303 23 C -0.017 4.017 24 C 0.001 3.999 25 O -0.370 6.370 26 H 0.102 0.898 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.132 0.868 31 H 0.239 0.761 32 H 0.094 0.906 33 H 0.114 0.886 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.069 0.931 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.076 0.924 41 H 0.072 0.928 42 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.705 4.013 8.817 10.058 hybrid contribution 0.250 1.809 0.120 1.830 sum -2.455 5.822 8.937 10.945 Atomic orbital electron populations 1.69677 1.07893 1.30798 1.31182 1.26170 0.94773 1.01373 0.90789 0.86597 0.81841 0.80031 0.79776 1.19074 1.20989 1.16172 1.20521 0.92392 0.97994 1.38443 0.84552 1.17110 0.91934 0.87994 0.87158 1.21251 0.95496 1.04715 1.03880 1.20856 0.93718 0.95759 0.96038 1.20531 0.98523 1.02245 1.06402 1.20408 0.92850 0.94269 0.92747 1.29964 1.02760 1.27074 1.26433 1.00864 0.72822 0.73033 0.72821 1.93460 1.55316 1.66636 1.83359 1.93502 1.46792 1.77660 1.77748 1.55491 1.45786 1.59465 1.26919 1.21610 0.89413 0.93334 0.95461 1.21751 0.97533 0.99112 0.98081 1.22428 0.97127 0.98259 0.83488 1.87876 1.51579 1.62844 1.28024 1.22502 0.90492 0.93227 0.95461 1.22209 0.88837 0.96333 0.92523 1.86597 1.41446 1.81356 1.27650 0.89815 0.87573 0.88263 0.88053 0.86762 0.76123 0.90611 0.88616 0.90881 0.91071 0.93128 0.92308 0.92705 0.91772 0.92367 0.92800 0.77768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.59 13.93 55.55 0.77 -16.82 16 2 C 0.09 2.10 4.68 -17.34 -0.08 2.02 16 3 Si 0.89 18.31 24.02 -169.99 -4.08 14.23 16 4 H -0.27 -5.37 6.69 56.52 0.38 -4.99 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.24 -5.06 6.85 56.52 0.39 -4.67 16 7 C -0.47 -11.26 5.26 -37.74 -0.20 -11.45 16 8 H 0.14 3.54 4.49 -52.49 -0.24 3.30 16 9 C 0.16 3.88 5.04 -106.82 -0.54 3.35 16 10 C -0.23 -5.31 7.13 -38.87 -0.28 -5.59 16 11 C -0.05 -0.93 10.02 -39.66 -0.40 -1.32 16 12 C -0.26 -5.19 10.05 -39.29 -0.39 -5.58 16 13 C 0.02 0.36 9.54 -39.66 -0.38 -0.01 16 14 C -0.77 -17.46 5.96 -38.87 -0.23 -17.69 16 15 S 2.71 57.64 5.44 -107.50 -0.58 57.06 16 16 O -1.00 -21.95 16.97 -57.17 -0.97 -22.92 16 17 O -0.97 -23.34 14.95 -57.17 -0.85 -24.19 16 18 N -1.12 -20.01 5.99 -10.61 -0.06 -20.07 16 19 C 0.13 2.34 4.32 -4.04 -0.02 2.32 16 20 C -0.13 -1.95 5.73 -26.73 -0.15 -2.11 16 21 C 0.06 1.00 5.94 37.16 0.22 1.22 16 22 O -0.38 -5.90 10.31 -40.08 -0.41 -6.31 16 23 C 0.06 0.74 6.32 37.16 0.23 0.97 16 24 C 0.08 0.77 7.43 37.16 0.28 1.05 16 25 O -0.57 -6.29 13.62 -40.08 -0.55 -6.84 16 26 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 27 H 0.11 2.34 4.81 -52.49 -0.25 2.09 16 28 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 29 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 30 H 0.11 2.22 7.32 -52.49 -0.38 1.84 16 31 H 0.41 6.00 8.67 -34.47 -0.30 5.70 16 32 H 0.08 1.47 5.68 -51.92 -0.29 1.18 16 33 H 0.10 1.94 6.07 -51.93 -0.32 1.62 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.81 8.14 -51.92 -0.42 0.38 16 37 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.38 2.18 9.12 45.56 0.42 2.60 16 LS Contribution 348.98 15.07 5.26 5.26 Total: -1.00 -30.77 348.98 -8.18 -38.95 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -4.77 Total: 14.50 kcal Atomic # 6 Polarization: -30.90 SS G_CDS: -1.94 Total: -32.83 kcal Atomic # 7 Polarization: -37.60 SS G_CDS: 0.71 Total: -36.89 kcal Atomic # 8 Polarization: -57.48 SS G_CDS: -2.78 Total: -60.26 kcal Atomic # 14 Polarization: 18.31 SS G_CDS: -4.08 Total: 14.23 kcal Atomic # 16 Polarization: 57.64 SS G_CDS: -0.58 Total: 57.06 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.77 -8.18 -38.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601387710.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.456 kcal (2) G-P(sol) polarization free energy of solvation -30.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds