Wall clock time and date at job start Tue Mar 31 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42900 * 113.99709 * 2 1 4 4 C 1.53000 * 109.47028 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.46936 * 55.00380 * 4 3 2 6 6 C 1.53002 * 109.47194 * 174.99886 * 4 3 2 7 7 N 1.46501 * 109.47281 * 184.12626 * 6 4 3 8 8 S 1.65601 * 119.99931 * 163.39322 * 7 6 4 9 9 O 1.42098 * 106.40315 * 309.36639 * 8 7 6 10 10 O 1.42101 * 106.39957 * 176.44123 * 8 7 6 11 11 C 1.76200 * 107.21662 * 62.90694 * 8 7 6 12 12 C 1.37643 * 120.12961 * 244.99703 * 11 8 7 13 13 C 1.38607 * 120.25061 * 180.29888 * 12 11 8 14 14 C 1.38661 * 120.50094 * 359.44187 * 13 12 11 15 15 C 1.37591 * 120.24674 * 0.55176 * 14 13 12 16 16 C 1.40697 * 120.13127 * 65.01683 * 11 8 7 17 17 C 1.41399 * 120.24332 * 359.95264 * 16 11 8 18 18 H 1.08001 * 119.99939 * 328.35422 * 17 16 11 19 19 C 1.39945 * 119.99965 * 148.34008 * 17 16 11 20 20 N 1.30821 * 120.00078 * 348.22059 * 19 17 16 21 21 Si 1.86808 * 119.99806 * 168.21089 * 19 17 16 22 22 H 1.48497 * 109.47057 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.46638 * 120.00599 * 21 19 17 24 24 H 1.48496 * 109.47001 * 240.00127 * 21 19 17 25 25 O 1.42894 * 109.47538 * 295.00079 * 4 3 2 26 26 C 1.42901 * 114.00016 * 96.14790 * 25 4 3 27 27 H 1.09005 * 109.46452 * 299.99360 * 1 2 3 28 28 H 1.08990 * 109.47523 * 59.99698 * 1 2 3 29 29 H 1.09000 * 109.46548 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47174 * 60.00490 * 3 2 1 31 31 H 1.08998 * 109.47190 * 300.00667 * 3 2 1 32 32 H 1.09001 * 109.47041 * 64.12778 * 6 4 3 33 33 H 1.08999 * 109.47225 * 304.13177 * 6 4 3 34 34 H 0.96995 * 119.99934 * 343.39437 * 7 6 4 35 35 H 1.08002 * 119.87073 * 0.02562 * 12 11 8 36 36 H 1.08004 * 119.74635 * 179.69733 * 13 12 11 37 37 H 1.08002 * 119.87286 * 180.30278 * 14 13 12 38 38 H 1.08000 * 120.12777 * 179.74409 * 15 14 13 39 39 H 0.96999 * 120.00029 * 180.02562 * 20 19 17 40 40 H 1.08997 * 109.47521 * 184.47163 * 26 25 4 41 41 H 1.09002 * 109.47364 * 304.46928 * 26 25 4 42 42 H 1.09005 * 109.47025 * 64.46547 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.8507 0.5687 -0.8427 6 6 4.1572 2.5770 -0.1264 7 7 5.6137 2.4543 -0.2261 8 16 6.5162 3.7286 -0.7773 9 8 5.9168 4.1477 -1.9956 10 8 7.8765 3.3299 -0.6772 11 6 6.3006 5.0530 0.3647 12 6 5.6763 6.2135 -0.0330 13 6 5.5109 7.2592 0.8616 14 6 5.9608 7.1455 2.1682 15 6 6.5876 5.9947 2.5877 16 6 6.7663 4.9287 1.6865 17 6 7.4086 3.7411 2.1066 18 1 7.1264 2.7925 1.6741 19 6 8.4102 3.7949 3.0825 20 7 8.9143 4.9480 3.4395 21 14 9.0270 2.2200 3.8755 22 1 8.3008 1.0591 3.3010 23 1 10.4815 2.0716 3.6154 24 1 8.7895 2.2774 5.3402 25 8 3.9659 0.5793 1.2200 26 6 4.1809 -0.8303 1.1255 27 1 -0.3632 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0277 0.0005 30 1 1.6886 1.8464 0.8901 31 1 1.6885 1.8464 -0.8899 32 1 3.9019 3.1697 0.7521 33 1 3.7719 3.0677 -1.0202 34 1 6.0493 1.6266 0.0307 35 1 5.3179 6.3112 -1.0471 36 1 5.0242 8.1680 0.5395 37 1 5.8222 7.9648 2.8581 38 1 6.9409 5.9098 3.6047 39 1 9.6088 4.9853 4.1157 40 1 4.4284 -1.2269 2.1101 41 1 3.2753 -1.3121 0.7570 42 1 5.0029 -1.0271 0.4372 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601387890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:04 Heat of formation + Delta-G solvation = -150.279665 kcal Electronic energy + Delta-G solvation = -27105.861036 eV Core-core repulsion = 23177.976323 eV Total energy + Delta-G solvation = -3927.884714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -38.94564 -37.57091 -37.13449 -36.21389 -34.82378 -34.62631 -33.81177 -30.70845 -30.17220 -29.55674 -27.16839 -26.12018 -25.50061 -24.54034 -21.71203 -21.48390 -21.10282 -18.61234 -17.66630 -17.07446 -16.98233 -16.83904 -16.01364 -15.82815 -15.51986 -15.31302 -15.09734 -14.50413 -14.30845 -14.05225 -13.92036 -13.27209 -13.22771 -13.02855 -12.71850 -12.60051 -12.28707 -11.89793 -11.85335 -11.50933 -11.27767 -11.24194 -11.16261 -11.14031 -11.05026 -10.98395 -10.91448 -10.66065 -10.45710 -9.87076 -9.85157 -9.48535 -9.46259 -9.38500 -8.77551 -8.01929 -7.56169 -6.99065 -4.71334 1.53362 2.35222 2.74844 3.01833 3.08928 3.13382 3.48274 3.78491 3.83453 4.01240 4.45064 4.73574 4.88077 4.99185 5.01391 5.14429 5.20151 5.29505 5.33100 5.43885 5.44936 5.56234 5.61446 5.64251 5.72748 5.87288 5.99723 6.04907 6.24385 6.29338 6.42208 6.82254 6.94273 6.95905 7.10213 7.25979 7.33633 7.49473 7.55832 7.69413 7.81501 7.92800 8.31783 8.55664 8.66804 9.95994 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010820 B = 0.005000 C = 0.004198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2587.297362 B = 5598.914186 C = 6668.667391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.040 3.960 4 C 0.087 3.913 5 H 0.076 0.924 6 C 0.129 3.871 7 N -1.117 6.117 8 S 2.701 3.299 9 O -0.999 6.999 10 O -0.962 6.962 11 C -0.774 4.774 12 C -0.004 4.004 13 C -0.249 4.249 14 C -0.077 4.077 15 C -0.154 4.154 16 C 0.190 3.810 17 C -0.447 4.447 18 H 0.090 0.910 19 C 0.081 3.919 20 N -0.779 5.779 21 Si 0.915 3.085 22 H -0.254 1.254 23 H -0.270 1.270 24 H -0.270 1.270 25 O -0.369 6.369 26 C 0.031 3.969 27 H 0.042 0.958 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.413 0.587 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.120 0.880 39 H 0.286 0.714 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 -8.213 -2.088 14.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.037 4.037 4 C 0.027 3.973 5 H 0.094 0.906 6 C 0.001 3.999 7 N -0.874 5.874 8 S 2.798 3.202 9 O -0.990 6.990 10 O -0.952 6.952 11 C -0.869 4.869 12 C -0.024 4.024 13 C -0.270 4.270 14 C -0.096 4.096 15 C -0.174 4.174 16 C 0.185 3.815 17 C -0.475 4.475 18 H 0.108 0.892 19 C -0.139 4.139 20 N -0.402 5.402 21 Si 0.739 3.261 22 H -0.177 1.177 23 H -0.195 1.195 24 H -0.195 1.195 25 O -0.288 6.288 26 C -0.066 4.066 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.106 0.894 34 H 0.247 0.753 35 H 0.126 0.874 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.070 0.930 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.814 -8.039 -2.619 13.727 hybrid contribution -0.015 -0.392 1.035 1.107 sum -10.829 -8.432 -1.584 13.816 Atomic orbital electron populations 1.22733 0.81101 1.02551 1.00067 1.87843 1.19703 1.27837 1.95488 1.23115 0.93935 0.85170 1.01511 1.22311 0.91229 0.95142 0.88611 0.90568 1.21124 0.80606 0.95316 1.02827 1.55554 1.15092 1.31256 1.85493 1.01068 0.72672 0.73125 0.73286 1.93442 1.78887 1.82771 1.43878 1.93548 1.32218 1.82198 1.87265 1.29875 1.29244 1.16103 1.11711 1.20255 0.92787 0.92008 0.97359 1.20481 1.12034 0.99266 0.95194 1.20890 0.96786 0.96696 0.95215 1.21421 1.01639 0.94305 1.00039 1.16997 0.84353 0.92324 0.87790 1.19889 1.15160 0.94647 1.17806 0.89203 1.25925 0.95195 0.98225 0.94601 1.69785 1.19951 1.26589 1.23873 0.86124 0.79435 0.81664 0.78924 1.17684 1.19452 1.19538 1.87986 1.87517 1.21282 1.31974 1.22843 0.99837 0.81675 1.02248 0.93976 0.94083 0.89820 0.91796 0.91959 0.90449 0.89413 0.75319 0.87426 0.88742 0.88831 0.86233 0.90259 0.90021 0.92997 0.94329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.47 9.29 -40.08 -0.37 -4.85 16 3 C 0.04 0.46 5.60 37.16 0.21 0.66 16 4 C 0.09 1.14 2.59 -26.73 -0.07 1.07 16 5 H 0.08 0.94 7.75 -51.93 -0.40 0.53 16 6 C 0.13 1.93 5.88 -4.04 -0.02 1.91 16 7 N -1.12 -19.80 5.03 -10.61 -0.05 -19.85 16 8 S 2.70 59.02 4.96 -107.50 -0.53 58.48 16 9 O -1.00 -22.36 16.49 -57.17 -0.94 -23.30 16 10 O -0.96 -24.06 16.63 -57.17 -0.95 -25.01 16 11 C -0.77 -18.47 5.90 -38.87 -0.23 -18.70 16 12 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 13 C -0.25 -5.42 10.05 -39.29 -0.39 -5.81 16 14 C -0.08 -1.72 10.02 -39.66 -0.40 -2.12 16 15 C -0.15 -3.82 8.64 -38.88 -0.34 -4.16 16 16 C 0.19 4.86 5.50 -106.82 -0.59 4.27 16 17 C -0.45 -11.34 7.53 -37.74 -0.28 -11.62 16 18 H 0.09 2.15 5.95 -52.49 -0.31 1.84 16 19 C 0.08 1.99 5.21 -17.34 -0.09 1.90 16 20 N -0.78 -19.47 11.11 55.55 0.62 -18.85 16 21 Si 0.92 18.46 29.58 -169.99 -5.03 13.43 16 22 H -0.25 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 24 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 25 O -0.37 -5.45 10.07 -40.08 -0.40 -5.85 16 26 C 0.03 0.37 10.69 101.05 1.08 1.45 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.09 1.20 7.77 -51.93 -0.40 0.80 16 34 H 0.41 6.85 8.30 -34.47 -0.29 6.56 16 35 H 0.11 2.22 7.33 -52.49 -0.38 1.83 16 36 H 0.09 1.78 8.06 -52.48 -0.42 1.35 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.12 2.99 6.49 -52.49 -0.34 2.65 16 39 H 0.29 6.43 8.30 -40.82 -0.34 6.09 16 40 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.05 0.59 6.83 -51.93 -0.35 0.23 16 42 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 362.61 15.07 5.46 5.46 Total: -1.00 -31.66 362.61 -8.44 -40.10 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.85 Total: 10.47 kcal Atomic # 6 Polarization: -29.85 SS G_CDS: -0.39 Total: -30.24 kcal Atomic # 7 Polarization: -39.27 SS G_CDS: 0.56 Total: -38.70 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -2.67 Total: -59.01 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 16 Polarization: 59.02 SS G_CDS: -0.53 Total: 58.48 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.66 -8.44 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601387890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.176 kcal (2) G-P(sol) polarization free energy of solvation -31.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds