Wall clock time and date at job start Tue Mar 31 2020 05:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99882 * 2 1 4 4 C 1.53001 * 109.47153 * 179.97438 * 3 2 1 5 5 H 1.08997 * 109.47207 * 304.99703 * 4 3 2 6 6 C 1.53003 * 109.47172 * 184.99591 * 4 3 2 7 7 N 1.46495 * 109.47066 * 179.97438 * 6 4 3 8 8 S 1.65601 * 120.00073 * 165.98194 * 7 6 4 9 9 O 1.42095 * 106.40589 * 176.35400 * 8 7 6 10 10 O 1.42106 * 106.40279 * 309.27687 * 8 7 6 11 11 C 1.76207 * 107.21576 * 62.81112 * 8 7 6 12 12 C 1.37642 * 120.12742 * 245.81536 * 11 8 7 13 13 C 1.38611 * 120.24528 * 179.97438 * 12 11 8 14 14 C 1.38659 * 120.50464 * 0.02805 * 13 12 11 15 15 C 1.37607 * 120.24598 * 0.02562 * 14 13 12 16 16 C 1.40689 * 120.12561 * 65.54634 * 11 8 7 17 17 C 1.41397 * 120.24753 * 359.97438 * 16 11 8 18 18 H 1.08001 * 119.99962 * 331.43890 * 17 16 11 19 19 C 1.39949 * 120.00318 * 151.43081 * 17 16 11 20 20 N 1.30821 * 119.99877 * 348.43442 * 19 17 16 21 21 Si 1.86796 * 120.00279 * 168.43491 * 19 17 16 22 22 H 1.48494 * 109.47372 * 89.99655 * 21 19 17 23 23 H 1.48490 * 109.47222 * 210.00144 * 21 19 17 24 24 H 1.48507 * 109.46839 * 329.99786 * 21 19 17 25 25 O 1.42901 * 109.46963 * 64.99590 * 4 3 2 26 26 C 1.42898 * 114.00050 * 269.99743 * 25 4 3 27 27 H 1.08997 * 109.47290 * 300.00372 * 1 2 3 28 28 H 1.09000 * 109.47057 * 60.00484 * 1 2 3 29 29 H 1.08999 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47701 * 59.99298 * 3 2 1 31 31 H 1.09008 * 109.46947 * 299.99642 * 3 2 1 32 32 H 1.08997 * 109.47146 * 300.00149 * 6 4 3 33 33 H 1.08995 * 109.46852 * 60.00077 * 6 4 3 34 34 H 0.97001 * 120.00005 * 345.98371 * 7 6 4 35 35 H 1.07995 * 119.87248 * 0.02562 * 12 11 8 36 36 H 1.07996 * 119.74633 * 179.97438 * 13 12 11 37 37 H 1.07993 * 119.87466 * 179.97438 * 14 13 12 38 38 H 1.07998 * 120.12488 * 179.97438 * 15 14 13 39 39 H 0.96994 * 120.00409 * 180.02562 * 20 19 17 40 40 H 1.09001 * 109.46769 * 60.00372 * 26 25 4 41 41 H 1.09004 * 109.47023 * 179.97438 * 26 25 4 42 42 H 1.09000 * 109.46976 * 300.00453 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 1 3.8508 0.5687 0.8427 6 6 4.1572 2.5770 0.1263 7 7 5.6176 2.4613 0.1275 8 16 6.5551 3.8078 -0.0971 9 8 7.9046 3.3850 0.0419 10 8 6.0587 4.4526 -1.2621 11 6 6.2338 4.8976 1.2497 12 6 5.6225 6.1104 1.0264 13 6 5.3681 6.9694 2.0841 14 6 5.7258 6.6189 3.3771 15 6 6.3390 5.4119 3.6236 16 6 6.5960 4.5290 2.5582 17 6 7.2189 3.2829 2.8006 18 1 7.0220 2.4449 2.1484 19 6 8.0908 3.1356 3.8853 20 7 8.5074 4.1904 4.5376 21 14 8.6598 1.4331 4.4019 22 1 9.9056 1.0850 3.6726 23 1 8.9219 1.4210 5.8634 24 1 7.6038 0.4396 4.0802 25 8 3.9658 0.5792 -1.2201 26 6 4.0473 -0.8464 -1.1646 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.6885 1.8465 0.8898 31 1 1.6886 1.8464 -0.8901 32 1 3.8419 3.1931 -0.7158 33 1 3.8290 3.0388 1.0574 34 1 6.0355 1.5960 0.2599 35 1 5.3393 6.3934 0.0234 36 1 4.8884 7.9192 1.8996 37 1 5.5231 7.2960 4.1936 38 1 6.6171 5.1411 4.6314 39 1 9.1119 4.0884 5.2892 40 1 3.0653 -1.2575 -0.9304 41 1 4.3803 -1.2291 -2.1294 42 1 4.7579 -1.1399 -0.3920 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601387891.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:08 Heat of formation + Delta-G solvation = -150.123376 kcal Electronic energy + Delta-G solvation = -27016.181737 eV Core-core repulsion = 23088.303801 eV Total energy + Delta-G solvation = -3927.877936 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -38.97234 -37.60060 -37.11875 -36.17843 -34.78882 -34.64530 -33.88327 -30.69101 -30.20961 -29.55449 -27.19709 -26.11856 -25.55709 -24.54195 -21.71573 -21.51485 -21.12371 -18.60366 -17.72171 -17.15075 -16.94894 -16.77510 -16.04439 -15.89559 -15.44503 -15.34444 -15.10689 -14.48055 -14.33770 -14.02057 -13.88730 -13.35513 -13.24384 -13.11278 -12.76866 -12.57831 -12.29530 -11.90770 -11.88052 -11.52204 -11.29211 -11.26485 -11.17586 -11.12518 -11.06798 -10.98584 -10.83215 -10.65375 -10.51863 -9.91662 -9.88205 -9.53684 -9.44614 -9.40975 -8.76326 -8.04516 -7.61278 -7.03764 -4.77149 1.54864 2.33193 2.72664 2.95888 2.99113 3.11234 3.48063 3.75827 3.76425 4.03626 4.40400 4.76933 4.87208 4.99614 5.02237 5.14564 5.19253 5.29020 5.34896 5.43410 5.44585 5.55397 5.61438 5.65176 5.81299 5.85375 5.90277 6.04471 6.23472 6.29963 6.41352 6.76738 6.93367 6.94785 7.07866 7.22849 7.29880 7.48135 7.55304 7.67585 7.80095 7.88489 8.27931 8.49187 8.64015 9.88965 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.004720 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.233651 B = 5930.715770 C = 6677.060526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.390 6.390 3 C 0.038 3.962 4 C 0.087 3.913 5 H 0.078 0.922 6 C 0.132 3.868 7 N -1.115 6.115 8 S 2.702 3.298 9 O -0.963 6.963 10 O -0.996 6.996 11 C -0.776 4.776 12 C -0.003 4.003 13 C -0.250 4.250 14 C -0.077 4.077 15 C -0.158 4.158 16 C 0.186 3.814 17 C -0.445 4.445 18 H 0.087 0.913 19 C 0.081 3.919 20 N -0.776 5.776 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.273 1.273 24 H -0.256 1.256 25 O -0.373 6.373 26 C 0.029 3.971 27 H 0.041 0.959 28 H 0.041 0.959 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.412 0.588 35 H 0.108 0.892 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.125 0.875 39 H 0.288 0.712 40 H 0.055 0.945 41 H 0.079 0.921 42 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.379 -7.754 -2.721 14.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.309 6.309 3 C -0.040 4.040 4 C 0.027 3.973 5 H 0.096 0.904 6 C 0.004 3.996 7 N -0.872 5.872 8 S 2.800 3.200 9 O -0.954 6.954 10 O -0.987 6.987 11 C -0.872 4.872 12 C -0.023 4.023 13 C -0.271 4.271 14 C -0.096 4.096 15 C -0.178 4.178 16 C 0.181 3.819 17 C -0.473 4.473 18 H 0.105 0.895 19 C -0.141 4.141 20 N -0.399 5.399 21 Si 0.738 3.262 22 H -0.186 1.186 23 H -0.198 1.198 24 H -0.180 1.180 25 O -0.291 6.291 26 C -0.067 4.067 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.102 0.898 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.098 0.902 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.570 -7.453 -3.464 13.389 hybrid contribution -0.145 -0.633 1.347 1.496 sum -10.715 -8.086 -2.117 13.590 Atomic orbital electron populations 1.22735 0.81121 1.02562 1.00078 1.87847 1.19717 1.27822 1.95475 1.23163 0.94050 0.85198 1.01540 1.22341 0.91154 0.95222 0.88549 0.90421 1.21094 0.80585 0.95196 1.02697 1.55495 1.14702 1.25339 1.91625 1.01057 0.72710 0.72564 0.73713 1.93544 1.32856 1.81561 1.87418 1.93449 1.81660 1.75717 1.47834 1.29897 1.30448 1.13146 1.13676 1.20264 0.92437 0.92016 0.97581 1.20492 1.12437 1.00654 0.93512 1.20908 0.96889 0.96203 0.95587 1.21522 1.01675 0.94894 0.99708 1.17004 0.84538 0.91670 0.88684 1.19847 1.20884 0.96941 1.09627 0.89507 1.25948 0.94441 0.99273 0.94409 1.69774 1.23174 1.31044 1.15956 0.86177 0.80457 0.81307 0.78265 1.18632 1.19816 1.18004 1.87949 1.87814 1.19797 1.33540 1.22860 1.00877 0.81151 1.01843 0.94018 0.94027 0.89810 0.91822 0.91932 0.89878 0.90051 0.75503 0.87382 0.88756 0.88847 0.85704 0.90134 0.92688 0.90209 0.94271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.45 8.83 -40.09 -0.35 -4.81 16 3 C 0.04 0.43 5.60 37.16 0.21 0.64 16 4 C 0.09 1.15 2.58 -26.73 -0.07 1.08 16 5 H 0.08 0.98 7.79 -51.93 -0.40 0.58 16 6 C 0.13 1.98 5.88 -4.04 -0.02 1.96 16 7 N -1.11 -19.79 5.00 -10.62 -0.05 -19.85 16 8 S 2.70 59.60 4.96 -107.50 -0.53 59.06 16 9 O -0.96 -24.20 16.52 -57.17 -0.94 -25.15 16 10 O -1.00 -23.03 16.53 -57.17 -0.95 -23.98 16 11 C -0.78 -18.35 5.90 -38.87 -0.23 -18.57 16 12 C 0.00 -0.07 9.54 -39.66 -0.38 -0.45 16 13 C -0.25 -5.39 10.05 -39.29 -0.39 -5.78 16 14 C -0.08 -1.70 10.02 -39.66 -0.40 -2.09 16 15 C -0.16 -3.85 8.66 -38.87 -0.34 -4.18 16 16 C 0.19 4.66 5.55 -106.83 -0.59 4.06 16 17 C -0.44 -10.99 7.63 -37.74 -0.29 -11.28 16 18 H 0.09 2.00 5.83 -52.49 -0.31 1.70 16 19 C 0.08 1.91 5.24 -17.34 -0.09 1.82 16 20 N -0.78 -18.92 10.85 55.55 0.60 -18.31 16 21 Si 0.91 17.82 29.58 -169.99 -5.03 12.79 16 22 H -0.26 -5.20 7.11 56.52 0.40 -4.79 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.69 16 24 H -0.26 -4.79 7.11 56.52 0.40 -4.38 16 25 O -0.37 -5.35 10.21 -40.09 -0.41 -5.76 16 26 C 0.03 0.34 10.71 101.05 1.08 1.42 16 27 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 32 H 0.08 1.25 7.82 -51.93 -0.41 0.85 16 33 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 34 H 0.41 6.69 8.48 -34.47 -0.29 6.40 16 35 H 0.11 2.24 7.32 -52.49 -0.38 1.86 16 36 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 37 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.13 3.06 6.22 -52.49 -0.33 2.74 16 39 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 40 H 0.05 0.62 6.40 -51.93 -0.33 0.29 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.04 0.43 8.08 -51.93 -0.42 0.01 16 LS Contribution 361.52 15.07 5.45 5.45 Total: -1.00 -31.45 361.52 -8.43 -39.88 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: -5.81 Total: 10.69 kcal Atomic # 6 Polarization: -29.62 SS G_CDS: -0.40 Total: -30.02 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.55 Total: -38.16 kcal Atomic # 8 Polarization: -57.04 SS G_CDS: -2.65 Total: -59.70 kcal Atomic # 14 Polarization: 17.82 SS G_CDS: -5.03 Total: 12.79 kcal Atomic # 16 Polarization: 59.60 SS G_CDS: -0.53 Total: 59.06 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.45 -8.43 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601387891.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.247 kcal (2) G-P(sol) polarization free energy of solvation -31.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds