Wall clock time and date at job start Tue Mar 31 2020 05:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00107 * 2 1 4 4 C 1.53010 * 109.46644 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.46595 * 180.02562 * 4 3 2 6 6 H 1.09008 * 109.47372 * 304.99798 * 5 4 3 7 7 C 1.53001 * 109.47129 * 185.00193 * 5 4 3 8 8 O 1.42898 * 109.46652 * 304.99899 * 7 5 4 9 9 N 1.46499 * 109.47316 * 65.00071 * 5 4 3 10 10 S 1.65602 * 120.00181 * 213.59787 * 9 5 4 11 11 O 1.42101 * 106.40062 * 311.02152 * 10 9 5 12 12 O 1.42095 * 106.40352 * 178.10041 * 10 9 5 13 13 C 1.76203 * 107.21787 * 64.55829 * 10 9 5 14 14 C 1.37638 * 120.13027 * 245.41512 * 13 10 9 15 15 C 1.38618 * 120.24654 * 180.31612 * 14 13 10 16 16 C 1.38656 * 120.50075 * 359.68080 * 15 14 13 17 17 C 1.37597 * 120.25031 * 359.97438 * 16 15 14 18 18 C 1.40704 * 120.12291 * 65.11117 * 13 10 9 19 19 C 1.41388 * 120.24850 * 359.97438 * 18 13 10 20 20 H 1.08010 * 119.99512 * 335.87778 * 19 18 13 21 21 C 1.39944 * 120.00230 * 155.87904 * 19 18 13 22 22 N 1.30817 * 119.99898 * 334.31169 * 21 19 18 23 23 Si 1.86804 * 119.99840 * 154.31692 * 21 19 18 24 24 H 1.48494 * 109.46968 * 269.99668 * 23 21 19 25 25 H 1.48497 * 109.47224 * 30.00211 * 23 21 19 26 26 H 1.48504 * 109.46968 * 150.00024 * 23 21 19 27 27 H 1.09007 * 109.47313 * 59.99723 * 1 2 3 28 28 H 1.09000 * 109.47390 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47386 * 300.00675 * 1 2 3 30 30 H 1.08993 * 109.47026 * 60.00176 * 3 2 1 31 31 H 1.08994 * 109.46823 * 299.99694 * 3 2 1 32 32 H 1.08993 * 109.47072 * 60.00441 * 4 3 2 33 33 H 1.08994 * 109.47454 * 299.99545 * 4 3 2 34 34 H 1.09004 * 109.47253 * 64.99679 * 7 5 4 35 35 H 1.08991 * 109.47270 * 184.99858 * 7 5 4 36 36 H 0.96705 * 113.99632 * 179.97438 * 8 7 5 37 37 H 0.96999 * 120.00437 * 33.59932 * 9 5 4 38 38 H 1.08000 * 119.88024 * 0.02562 * 14 13 10 39 39 H 1.07995 * 119.74875 * 179.69624 * 15 14 13 40 40 H 1.08001 * 119.87323 * 180.02562 * 16 15 14 41 41 H 1.07998 * 120.12839 * 180.02562 * 17 16 15 42 42 H 0.97004 * 120.00097 * 354.13711 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1845 0.0006 5 6 4.1578 2.5822 0.0013 6 1 3.7675 3.1542 -0.8406 7 6 5.6781 2.4637 -0.1238 8 8 6.1768 1.6174 0.9140 9 7 3.8227 3.2654 1.2531 10 16 3.5883 4.9048 1.2647 11 8 4.6955 5.4732 0.5789 12 8 3.2390 5.2508 2.5979 13 6 2.1677 5.2355 0.2762 14 6 2.2918 5.9460 -0.8960 15 6 1.1748 6.2133 -1.6722 16 6 -0.0774 5.7636 -1.2818 17 6 -0.2240 5.0454 -0.1173 18 6 0.9029 4.7688 0.6791 19 6 0.7643 4.0319 1.8778 20 1 1.6093 3.4940 2.2818 21 6 -0.4677 3.9995 2.5407 22 7 -1.3181 4.9820 2.3893 23 14 -0.8979 2.5532 3.6421 24 1 -1.5828 1.5074 2.8407 25 1 0.3448 1.9919 4.2300 26 1 -1.7979 3.0109 4.7311 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 1.6886 1.8463 0.8899 31 1 1.6886 1.8463 -0.8900 32 1 3.8574 0.6435 -0.8891 33 1 3.8568 0.6438 0.8908 34 1 5.9306 2.0360 -1.0942 35 1 6.1282 3.4522 -0.0343 36 1 7.1361 1.4965 0.8960 37 1 3.7380 2.7577 2.0752 38 1 3.2624 6.3007 -1.2100 39 1 1.2807 6.7757 -2.5880 40 1 -0.9408 5.9773 -1.8944 41 1 -1.2002 4.6958 0.1847 42 1 -1.0625 5.7716 1.8871 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601409252.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:54 Heat of formation + Delta-G solvation = -167.423698 kcal Electronic energy + Delta-G solvation = -28244.661677 eV Core-core repulsion = 24316.033543 eV Total energy + Delta-G solvation = -3928.628135 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 5.50 seconds Orbital eigenvalues (eV) -38.27473 -37.86316 -37.09940 -36.27367 -34.91281 -34.86566 -34.19373 -30.72393 -30.29573 -29.52935 -27.97844 -25.93282 -25.48214 -22.77164 -21.89649 -21.28876 -20.75589 -18.90162 -18.40842 -17.45115 -16.64088 -16.31503 -16.13096 -15.77907 -15.51417 -14.96471 -14.79420 -14.47193 -14.21688 -14.16229 -13.77057 -13.46851 -13.32354 -13.07125 -12.59011 -12.33525 -12.27110 -11.75602 -11.65684 -11.31108 -11.29353 -11.20164 -11.16145 -11.10791 -11.01884 -10.79282 -10.70195 -10.55938 -10.53439 -9.92193 -9.85415 -9.59389 -9.33980 -9.22468 -8.88861 -8.29366 -7.92134 -7.56457 -4.92591 1.44662 2.16819 2.58158 3.00424 3.09997 3.19134 3.77996 3.81152 4.01077 4.23936 4.36862 4.64770 5.02297 5.12332 5.22019 5.31660 5.45386 5.49988 5.58091 5.63049 5.68569 5.76571 5.86663 5.92693 5.94580 5.99638 6.06622 6.15224 6.25418 6.39121 6.53406 6.62943 6.82573 7.02373 7.21560 7.31802 7.41900 7.48374 7.55939 7.59389 7.70910 7.72914 7.89850 8.26785 8.48644 9.67318 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009509 B = 0.007376 C = 0.005823 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2943.733315 B = 3795.103875 C = 4807.770084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.398 6.398 3 C 0.050 3.950 4 C -0.113 4.113 5 C 0.167 3.833 6 H 0.096 0.904 7 C 0.058 3.942 8 O -0.565 6.565 9 N -1.111 6.111 10 S 2.699 3.301 11 O -0.999 6.999 12 O -0.966 6.966 13 C -0.786 4.786 14 C 0.014 3.986 15 C -0.267 4.267 16 C -0.053 4.053 17 C -0.216 4.216 18 C 0.165 3.835 19 C -0.490 4.490 20 H 0.089 0.911 21 C 0.045 3.955 22 N -0.767 5.767 23 Si 1.056 2.944 24 H -0.269 1.269 25 H -0.266 1.266 26 H -0.270 1.270 27 H 0.039 0.961 28 H 0.079 0.921 29 H 0.046 0.954 30 H 0.076 0.924 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.374 0.626 37 H 0.415 0.585 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.112 0.888 42 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.476 -7.638 -4.425 10.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.317 6.317 3 C -0.027 4.027 4 C -0.152 4.152 5 C 0.059 3.941 6 H 0.114 0.886 7 C -0.022 4.022 8 O -0.370 6.370 9 N -0.867 5.867 10 S 2.796 3.204 11 O -0.989 6.989 12 O -0.956 6.956 13 C -0.881 4.881 14 C -0.006 4.006 15 C -0.287 4.287 16 C -0.072 4.072 17 C -0.236 4.236 18 C 0.160 3.840 19 C -0.516 4.516 20 H 0.106 0.894 21 C -0.181 4.181 22 N -0.388 5.388 23 Si 0.878 3.122 24 H -0.194 1.194 25 H -0.191 1.191 26 H -0.195 1.195 27 H 0.058 0.942 28 H 0.097 0.903 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.220 0.780 37 H 0.249 0.751 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.130 0.870 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 4.282 -7.695 -3.031 9.313 hybrid contribution 0.791 0.758 -1.476 1.838 sum 5.073 -6.937 -4.507 9.704 Atomic orbital electron populations 1.22716 0.81217 1.01858 1.00706 1.87744 1.19589 1.28697 1.95655 1.22777 0.93229 0.84230 1.02432 1.21628 0.93637 0.95947 1.03957 1.20619 0.92346 0.94177 0.86968 0.88583 1.22819 0.94914 0.94536 0.89895 1.86493 1.26548 1.70408 1.53515 1.55701 1.87353 1.28014 1.15648 1.01147 0.73754 0.71660 0.73807 1.93439 1.52380 1.76559 1.76544 1.93545 1.84789 1.81170 1.36091 1.29790 1.15642 1.25802 1.16884 1.20323 0.97507 0.91478 0.91302 1.20435 0.93274 1.12372 1.02609 1.20823 0.95970 0.95100 0.95332 1.21342 0.98825 1.06538 0.96863 1.16942 0.89673 0.86287 0.91140 1.20947 0.99960 1.25524 1.05184 0.89356 1.27101 0.91866 1.01533 0.97631 1.70421 1.37157 1.04655 1.26540 0.83767 0.77834 0.74043 0.76537 1.19432 1.19071 1.19498 0.94243 0.90271 0.93544 0.90624 0.93410 0.90757 0.89772 0.93084 0.91801 0.78029 0.75062 0.87319 0.88592 0.88707 0.87044 0.87991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 11.01 101.05 1.11 1.57 16 2 O -0.40 -6.55 10.70 -35.23 -0.38 -6.93 16 3 C 0.05 0.82 5.83 37.16 0.22 1.03 16 4 C -0.11 -1.62 4.89 -26.73 -0.13 -1.75 16 5 C 0.17 2.51 2.56 -67.93 -0.17 2.33 16 6 H 0.10 1.44 7.83 -51.92 -0.41 1.04 16 7 C 0.06 0.75 6.88 37.16 0.26 1.00 16 8 O -0.57 -6.92 12.82 -35.23 -0.45 -7.37 16 9 N -1.11 -19.29 4.05 -4.89 -0.02 -19.31 16 10 S 2.70 57.23 4.87 -107.50 -0.52 56.71 16 11 O -1.00 -21.72 16.04 -57.17 -0.92 -22.64 16 12 O -0.97 -23.75 16.47 -57.17 -0.94 -24.69 16 13 C -0.79 -17.74 5.75 -38.87 -0.22 -17.96 16 14 C 0.01 0.30 9.54 -39.66 -0.38 -0.08 16 15 C -0.27 -5.50 10.05 -39.29 -0.39 -5.89 16 16 C -0.05 -1.12 10.02 -39.66 -0.40 -1.52 16 17 C -0.22 -4.96 7.94 -38.87 -0.31 -5.27 16 18 C 0.16 3.90 5.33 -106.82 -0.57 3.33 16 19 C -0.49 -11.56 6.54 -37.75 -0.25 -11.81 16 20 H 0.09 2.00 5.12 -52.48 -0.27 1.73 16 21 C 0.04 1.04 4.95 -17.35 -0.09 0.95 16 22 N -0.77 -18.74 12.27 55.55 0.68 -18.06 16 23 Si 1.06 20.06 30.00 -169.99 -5.10 14.96 16 24 H -0.27 -4.73 7.11 56.52 0.40 -4.33 16 25 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 26 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 27 H 0.04 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 1.37 5.93 -51.93 -0.31 1.07 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.08 1.24 7.73 -51.93 -0.40 0.84 16 34 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.90 7.43 -51.93 -0.39 0.51 16 36 H 0.37 2.86 9.12 45.56 0.42 3.28 16 37 H 0.42 6.86 8.58 -34.47 -0.30 6.57 16 38 H 0.11 2.15 7.32 -52.49 -0.38 1.76 16 39 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 41 H 0.11 2.59 6.37 -52.49 -0.33 2.26 16 42 H 0.31 7.72 6.63 -40.82 -0.27 7.45 16 LS Contribution 356.87 15.07 5.38 5.38 Total: -1.00 -30.03 356.87 -8.42 -38.44 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -4.82 Total: 17.58 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: -1.33 Total: -34.06 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: 0.66 Total: -37.38 kcal Atomic # 8 Polarization: -58.94 SS G_CDS: -2.69 Total: -61.63 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.10 Total: 14.96 kcal Atomic # 16 Polarization: 57.23 SS G_CDS: -0.52 Total: 56.71 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.03 -8.42 -38.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409252.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.980 kcal (2) G-P(sol) polarization free energy of solvation -30.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.50 seconds