Wall clock time and date at job start Tue Mar 31 2020 05:31:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 114.00127 * 2 1 4 4 C 1.52993 * 109.47165 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.46816 * 180.02562 * 4 3 2 6 6 H 1.08992 * 109.47537 * 55.00076 * 5 4 3 7 7 C 1.53006 * 109.46850 * 175.00255 * 5 4 3 8 8 O 1.42892 * 109.47540 * 55.00009 * 7 5 4 9 9 N 1.46504 * 109.47148 * 294.99591 * 5 4 3 10 10 S 1.65600 * 119.99771 * 142.72856 * 9 5 4 11 11 O 1.42096 * 106.40331 * 180.87383 * 10 9 5 12 12 O 1.42106 * 106.40380 * 313.79107 * 10 9 5 13 13 C 1.76202 * 107.22005 * 67.32908 * 10 9 5 14 14 C 1.37629 * 120.12818 * 246.77355 * 13 10 9 15 15 C 1.38619 * 120.24771 * 180.02562 * 14 13 10 16 16 C 1.38657 * 120.49805 * 359.97438 * 15 14 13 17 17 C 1.37589 * 120.25121 * 0.02562 * 16 15 14 18 18 C 1.40699 * 120.12334 * 66.50243 * 13 10 9 19 19 C 1.41399 * 120.24762 * 359.97438 * 18 13 10 20 20 H 1.08001 * 119.99675 * 333.23055 * 19 18 13 21 21 C 1.39942 * 120.00022 * 153.22469 * 19 18 13 22 22 N 1.30824 * 119.99787 * 344.12013 * 21 19 18 23 23 Si 1.86795 * 119.99961 * 164.12278 * 21 19 18 24 24 H 1.48496 * 109.47300 * 60.00082 * 23 21 19 25 25 H 1.48500 * 109.47072 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47020 * 300.00175 * 23 21 19 27 27 H 1.08998 * 109.47188 * 59.99901 * 1 2 3 28 28 H 1.08998 * 109.47034 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46917 * 299.99930 * 1 2 3 30 30 H 1.09007 * 109.46825 * 59.99790 * 3 2 1 31 31 H 1.08998 * 109.46944 * 300.00782 * 3 2 1 32 32 H 1.09004 * 109.47487 * 60.00522 * 4 3 2 33 33 H 1.08998 * 109.47611 * 300.00107 * 4 3 2 34 34 H 1.09010 * 109.46907 * 174.99994 * 7 5 4 35 35 H 1.09004 * 109.46723 * 294.99538 * 7 5 4 36 36 H 0.96696 * 114.00419 * 180.02562 * 8 7 5 37 37 H 0.96998 * 119.99968 * 322.73325 * 9 5 4 38 38 H 1.08000 * 119.88122 * 0.02562 * 14 13 10 39 39 H 1.08002 * 119.74908 * 179.97438 * 15 14 13 40 40 H 1.08004 * 119.87298 * 179.97438 * 16 15 14 41 41 H 1.08006 * 120.12937 * 179.97438 * 17 16 15 42 42 H 0.96998 * 119.99508 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 1 3.7674 3.1536 0.8422 7 6 5.6780 2.4638 0.1250 8 8 6.1769 1.6185 -0.9135 9 7 3.8227 3.2667 -1.2513 10 16 3.4989 4.8908 -1.2459 11 8 3.1942 5.2437 -2.5882 12 8 2.6096 5.1191 -0.1613 13 6 4.9998 5.7205 -0.8416 14 6 5.1124 6.4047 0.3473 15 6 6.2918 7.0588 0.6676 16 6 7.3704 7.0316 -0.2033 17 6 7.2804 6.3538 -1.3972 18 6 6.0898 5.6814 -1.7304 19 6 5.9879 4.9763 -2.9518 20 1 5.3069 4.1427 -3.0389 21 6 6.7694 5.3589 -4.0479 22 7 7.3524 6.5300 -4.0585 23 14 6.9801 4.1974 -5.4956 24 1 5.6517 3.8997 -6.0887 25 1 7.8481 4.8340 -6.5186 26 1 7.6085 2.9351 -5.0300 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8568 0.6440 -0.8909 33 1 3.8575 0.6436 0.8891 34 1 6.1282 3.4526 0.0364 35 1 5.9304 2.0353 1.0950 36 1 7.1361 1.4976 -0.8955 37 1 3.7904 2.7685 -2.0830 38 1 4.2787 6.4322 1.0333 39 1 6.3711 7.5936 1.6025 40 1 8.2845 7.5451 0.0563 41 1 8.1217 6.3343 -2.0743 42 1 7.8944 6.7950 -4.8181 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601409253.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:06 Heat of formation + Delta-G solvation = -160.823982 kcal Electronic energy + Delta-G solvation = -27626.884390 eV Core-core repulsion = 23698.542441 eV Total energy + Delta-G solvation = -3928.341949 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -38.32966 -37.63750 -37.13752 -36.22410 -34.85821 -34.70352 -33.91502 -30.87670 -30.20767 -29.58772 -27.97585 -26.17071 -25.53956 -22.92337 -21.65856 -21.20425 -20.73455 -18.82567 -17.73162 -17.29945 -16.57951 -16.50099 -16.03405 -15.98052 -15.56303 -15.37973 -14.78773 -14.46905 -14.29443 -13.93634 -13.50797 -13.31989 -13.26827 -13.01020 -12.76476 -12.33091 -11.92096 -11.79586 -11.54962 -11.39764 -11.30319 -11.16340 -11.14262 -11.13730 -11.03933 -10.88954 -10.82373 -10.63974 -10.52625 -9.92372 -9.66867 -9.59635 -9.45690 -9.41325 -8.78541 -8.04646 -7.65009 -7.07708 -4.75641 1.52234 2.32391 2.72151 2.96661 3.01221 3.12768 3.72825 3.77751 3.91422 4.37710 4.56359 4.73022 5.03669 5.13901 5.19434 5.24998 5.30018 5.34492 5.53244 5.56864 5.58051 5.61526 5.68711 5.73302 5.96013 6.03155 6.17120 6.21213 6.24572 6.38448 6.56062 6.76772 6.92924 7.06701 7.17245 7.28965 7.47437 7.55709 7.67560 7.79044 7.88503 7.96016 8.28055 8.48423 8.63085 9.85585 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012261 B = 0.005289 C = 0.004582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.146520 B = 5293.167950 C = 6110.033406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.057 3.943 4 C -0.113 4.113 5 C 0.163 3.837 6 H 0.101 0.899 7 C 0.058 3.942 8 O -0.561 6.561 9 N -1.112 6.112 10 S 2.695 3.305 11 O -0.964 6.964 12 O -1.000 7.000 13 C -0.780 4.780 14 C -0.002 4.002 15 C -0.254 4.254 16 C -0.077 4.077 17 C -0.161 4.161 18 C 0.187 3.813 19 C -0.435 4.435 20 H 0.090 0.910 21 C 0.081 3.919 22 N -0.771 5.771 23 Si 0.913 3.087 24 H -0.257 1.257 25 H -0.276 1.276 26 H -0.258 1.258 27 H 0.041 0.959 28 H 0.082 0.918 29 H 0.040 0.960 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.086 0.914 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.375 0.625 37 H 0.415 0.585 38 H 0.106 0.894 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.122 0.878 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.324 -9.248 5.645 11.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.020 4.020 4 C -0.152 4.152 5 C 0.055 3.945 6 H 0.119 0.881 7 C -0.021 4.021 8 O -0.366 6.366 9 N -0.868 5.868 10 S 2.793 3.207 11 O -0.954 6.954 12 O -0.990 6.990 13 C -0.875 4.875 14 C -0.022 4.022 15 C -0.275 4.275 16 C -0.096 4.096 17 C -0.181 4.181 18 C 0.182 3.818 19 C -0.463 4.463 20 H 0.108 0.892 21 C -0.141 4.141 22 N -0.394 5.394 23 Si 0.736 3.264 24 H -0.181 1.181 25 H -0.201 1.201 26 H -0.182 1.182 27 H 0.059 0.941 28 H 0.101 0.899 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.221 0.779 37 H 0.249 0.751 38 H 0.124 0.876 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.140 0.860 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.577 -8.814 5.319 10.899 hybrid contribution 1.377 -0.030 -0.630 1.515 sum -2.200 -8.844 4.689 10.249 Atomic orbital electron populations 1.22716 0.81367 1.02337 1.00119 1.87834 1.19468 1.28584 1.95503 1.22641 0.94309 0.84104 1.00919 1.21642 0.92569 0.96595 1.04415 1.20684 0.92990 0.93656 0.87156 0.88110 1.22743 0.94467 0.95273 0.89650 1.86433 1.26692 1.70064 1.53375 1.55730 1.88083 1.28092 1.14890 1.01209 0.74501 0.72007 0.72972 1.93551 1.84545 1.81360 1.35960 1.93443 1.63695 1.84979 1.56921 1.29802 1.20191 1.28510 1.09006 1.20237 0.96101 0.92549 0.93286 1.20453 0.95675 1.10321 1.01035 1.20872 0.96792 0.97272 0.94618 1.21464 0.98657 1.02060 0.95884 1.16942 0.88648 0.86655 0.89534 1.19865 1.18812 1.13176 0.94448 0.89232 1.25973 0.92694 0.94923 1.00495 1.69799 1.21682 1.17145 1.30751 0.86242 0.79936 0.80785 0.79397 1.18113 1.20070 1.18169 0.94072 0.89917 0.94133 0.93001 0.92847 0.89520 0.90379 0.91456 0.93614 0.77853 0.75089 0.87563 0.88875 0.88973 0.86039 0.90046 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.44 16 2 O -0.39 -5.35 10.70 -35.23 -0.38 -5.73 16 3 C 0.06 0.77 5.83 37.15 0.22 0.98 16 4 C -0.11 -1.49 4.91 -26.73 -0.13 -1.62 16 5 C 0.16 2.41 2.73 -67.92 -0.19 2.22 16 6 H 0.10 1.45 7.42 -51.93 -0.39 1.07 16 7 C 0.06 0.83 6.88 37.16 0.26 1.09 16 8 O -0.56 -7.94 12.83 -35.23 -0.45 -8.40 16 9 N -1.11 -19.19 4.13 -4.89 -0.02 -19.21 16 10 S 2.70 57.66 4.96 -107.50 -0.53 57.13 16 11 O -0.96 -23.91 16.40 -57.17 -0.94 -24.85 16 12 O -1.00 -21.91 16.22 -57.17 -0.93 -22.84 16 13 C -0.78 -17.91 5.04 -38.87 -0.20 -18.11 16 14 C 0.00 -0.04 9.53 -39.66 -0.38 -0.42 16 15 C -0.25 -5.36 10.05 -39.29 -0.39 -5.76 16 16 C -0.08 -1.66 10.02 -39.66 -0.40 -2.06 16 17 C -0.16 -3.83 8.68 -38.88 -0.34 -4.17 16 18 C 0.19 4.58 5.38 -106.82 -0.57 4.00 16 19 C -0.44 -10.64 7.66 -37.74 -0.29 -10.93 16 20 H 0.09 2.09 5.71 -52.49 -0.30 1.79 16 21 C 0.08 1.92 5.17 -17.34 -0.09 1.83 16 22 N -0.77 -18.64 10.98 55.55 0.61 -18.03 16 23 Si 0.91 17.86 29.59 -169.99 -5.03 12.83 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 25 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 27 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 31 H 0.05 0.75 7.75 -51.93 -0.40 0.35 16 32 H 0.09 1.20 7.73 -51.93 -0.40 0.80 16 33 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.07 1.12 7.00 -51.92 -0.36 0.76 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.38 4.02 9.12 45.56 0.42 4.44 16 37 H 0.42 6.81 8.58 -34.47 -0.30 6.51 16 38 H 0.11 2.14 7.32 -52.49 -0.38 1.76 16 39 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.09 1.75 8.06 -52.48 -0.42 1.32 16 41 H 0.12 2.93 6.24 -52.48 -0.33 2.61 16 42 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 LS Contribution 360.16 15.07 5.43 5.43 Total: -1.00 -30.86 360.16 -8.59 -39.45 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: -4.96 Total: 15.72 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: -1.39 Total: -31.51 kcal Atomic # 7 Polarization: -37.83 SS G_CDS: 0.59 Total: -37.24 kcal Atomic # 8 Polarization: -59.12 SS G_CDS: -2.69 Total: -61.81 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 57.66 SS G_CDS: -0.53 Total: 57.13 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.86 -8.59 -39.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601409253.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.371 kcal (2) G-P(sol) polarization free energy of solvation -30.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds