Wall clock time and date at job start Tue Mar 31 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46510 * 1 3 3 C 1.46492 * 119.99773 * 2 1 4 4 C 1.53008 * 109.47065 * 275.62409 * 3 2 1 5 5 O 1.42900 * 109.46979 * 65.00544 * 4 3 2 6 6 C 1.42897 * 114.00008 * 179.97438 * 5 4 3 7 7 C 1.53003 * 109.47085 * 179.97438 * 6 5 4 8 8 O 1.42893 * 109.47109 * 65.00020 * 7 6 5 9 9 S 1.65599 * 119.99869 * 180.02562 * 2 1 3 10 10 O 1.42090 * 106.40246 * 164.45692 * 9 2 1 11 11 O 1.42098 * 106.40199 * 31.53141 * 9 2 1 12 12 C 1.76204 * 107.21561 * 277.99588 * 9 2 1 13 13 C 1.37643 * 120.12998 * 112.59401 * 12 9 2 14 14 C 1.38615 * 120.24728 * 180.31976 * 13 12 9 15 15 C 1.38655 * 120.49983 * 359.67072 * 14 13 12 16 16 C 1.37604 * 120.25121 * 0.02562 * 15 14 13 17 17 C 1.40696 * 120.12767 * 292.28509 * 12 9 2 18 18 C 1.41403 * 120.24099 * 359.97438 * 17 12 9 19 19 H 1.07999 * 120.00364 * 328.68618 * 18 17 12 20 20 C 1.39951 * 119.99494 * 148.68512 * 18 17 12 21 21 N 1.30816 * 120.00277 * 339.74698 * 20 18 17 22 22 Si 1.86803 * 119.99609 * 159.75242 * 20 18 17 23 23 H 1.48500 * 109.47243 * 180.02562 * 22 20 18 24 24 H 1.48508 * 109.46689 * 299.99778 * 22 20 18 25 25 H 1.48502 * 109.47450 * 59.99501 * 22 20 18 26 26 H 1.08997 * 109.46845 * 270.00128 * 1 2 3 27 27 H 1.08997 * 109.46925 * 30.00220 * 1 2 3 28 28 H 1.09004 * 109.46823 * 150.00142 * 1 2 3 29 29 H 1.08991 * 109.47566 * 35.62584 * 3 2 1 30 30 H 1.09005 * 109.46728 * 155.63182 * 3 2 1 31 31 H 1.08998 * 109.47192 * 185.00360 * 4 3 2 32 32 H 1.08998 * 109.46957 * 305.00141 * 4 3 2 33 33 H 1.08997 * 109.47211 * 299.99786 * 6 5 4 34 34 H 1.08999 * 109.47274 * 59.99823 * 6 5 4 35 35 H 1.09002 * 109.47118 * 184.99845 * 7 6 5 36 36 H 1.09005 * 109.46974 * 304.99642 * 7 6 5 37 37 H 0.96703 * 114.00551 * 180.02562 * 8 7 6 38 38 H 1.07996 * 119.87753 * 0.02562 * 13 12 9 39 39 H 1.07998 * 119.75041 * 179.69324 * 14 13 12 40 40 H 1.08001 * 119.87495 * 180.02562 * 15 14 13 41 41 H 1.07998 * 120.12566 * 180.02562 * 16 15 14 42 42 H 0.97005 * 120.00612 * 353.99520 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3301 1.7811 -1.4356 5 8 1.0344 2.0926 -1.9517 6 6 1.0459 2.5829 -3.2939 7 6 -0.3869 2.8812 -3.7401 8 8 -0.9187 3.9482 -2.9524 9 16 2.2931 -1.4341 -0.0006 10 8 3.6310 -1.1249 -0.3658 11 8 1.4874 -2.3622 -0.7139 12 6 2.3510 -2.0036 1.6658 13 6 1.6659 -3.1399 2.0319 14 6 1.7045 -3.5863 3.3437 15 6 2.4373 -2.8995 4.2995 16 6 3.1350 -1.7646 3.9548 17 6 3.1031 -1.3022 2.6260 18 6 3.8167 -0.1376 2.2599 19 1 4.2188 -0.0419 1.2622 20 6 4.0019 0.8910 3.1907 21 7 3.2161 0.9795 4.2328 22 14 5.3711 2.1377 2.9447 23 1 5.3558 3.1165 4.0613 24 1 6.6800 1.4368 2.9194 25 1 5.1663 2.8505 1.6581 26 1 -0.3633 0.0000 1.0277 27 1 -0.3633 0.8899 -0.5139 28 1 -0.3633 -0.8900 -0.5138 29 1 1.6558 2.0010 0.5985 30 1 3.1899 1.1152 0.4240 31 1 2.9503 2.6773 -1.4457 32 1 2.7925 1.0122 -2.0545 33 1 1.6393 3.4959 -3.3421 34 1 1.4818 1.8310 -3.9517 35 1 -0.3874 3.1703 -4.7911 36 1 -1.0014 1.9906 -3.6080 37 1 -1.8265 4.1911 -3.1807 38 1 1.0923 -3.6830 1.2955 39 1 1.1599 -4.4761 3.6232 40 1 2.4607 -3.2565 5.3186 41 1 3.7055 -1.2315 4.7009 42 1 2.4525 0.3871 4.3163 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601410663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:09 Heat of formation + Delta-G solvation = -153.844098 kcal Electronic energy + Delta-G solvation = -27519.468306 eV Core-core repulsion = 23591.429027 eV Total energy + Delta-G solvation = -3928.039279 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -38.29419 -37.87077 -36.70817 -36.37315 -35.26233 -34.90761 -34.07268 -30.39854 -30.21208 -29.48111 -28.57175 -25.43354 -25.14905 -22.51426 -22.06652 -21.82184 -21.20524 -18.48906 -17.97419 -17.74194 -17.21634 -16.36922 -16.25181 -15.79489 -15.30437 -14.94223 -14.60496 -14.42862 -14.22689 -14.05219 -13.65019 -13.51963 -13.22661 -12.74419 -12.62069 -12.44622 -12.20147 -11.97036 -11.82947 -11.45515 -11.41976 -11.27738 -11.18448 -11.13916 -11.02092 -10.72212 -10.67470 -10.50663 -10.43491 -10.19948 -9.81664 -9.44608 -9.37598 -9.22353 -8.39570 -8.20797 -7.81218 -7.43783 -4.88070 1.45922 2.20443 2.62722 3.06288 3.14297 3.27257 3.74401 3.84059 3.87278 4.11984 4.32558 4.67717 4.96506 5.08070 5.09107 5.23806 5.24427 5.43574 5.47942 5.54022 5.64270 5.70879 5.74393 5.89394 6.01052 6.04359 6.12626 6.26939 6.38789 6.42691 6.58061 6.64597 6.87412 7.14254 7.21012 7.28115 7.34986 7.40900 7.49558 7.56622 7.65664 7.81161 7.96441 8.37287 8.57742 9.79444 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.012096 B = 0.005261 C = 0.004173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2314.238918 B = 5320.438360 C = 6708.381873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.988 5.988 3 C 0.125 3.875 4 C 0.040 3.960 5 O -0.373 6.373 6 C 0.058 3.942 7 C 0.079 3.921 8 O -0.565 6.565 9 S 2.704 3.296 10 O -0.974 6.974 11 O -0.996 6.996 12 C -0.779 4.779 13 C 0.010 3.990 14 C -0.259 4.259 15 C -0.057 4.057 16 C -0.209 4.209 17 C 0.173 3.827 18 C -0.533 4.533 19 H 0.118 0.882 20 C 0.043 3.957 21 N -0.781 5.781 22 Si 1.057 2.943 23 H -0.271 1.271 24 H -0.269 1.269 25 H -0.267 1.267 26 H 0.045 0.955 27 H 0.080 0.920 28 H 0.069 0.931 29 H 0.081 0.919 30 H 0.120 0.880 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.060 0.940 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.376 0.624 38 H 0.109 0.891 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.906 5.263 -9.321 11.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.824 5.824 3 C -0.001 4.001 4 C -0.038 4.038 5 O -0.292 6.292 6 C -0.019 4.019 7 C 0.001 3.999 8 O -0.370 6.370 9 S 2.802 3.198 10 O -0.964 6.964 11 O -0.987 6.987 12 C -0.873 4.873 13 C -0.010 4.010 14 C -0.279 4.279 15 C -0.076 4.076 16 C -0.228 4.228 17 C 0.169 3.831 18 C -0.560 4.560 19 H 0.135 0.865 20 C -0.182 4.182 21 N -0.403 5.403 22 Si 0.879 3.121 23 H -0.195 1.195 24 H -0.194 1.194 25 H -0.192 1.192 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.222 0.778 38 H 0.127 0.873 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.454 6.151 -8.962 11.405 hybrid contribution -1.293 -1.441 -0.164 1.943 sum -4.747 4.710 -9.126 11.314 Atomic orbital electron populations 1.21454 0.79197 1.03498 1.01088 1.57148 1.14657 1.20753 1.89848 1.21614 0.99497 0.85465 0.93535 1.23233 0.84741 0.99037 0.96778 1.87970 1.28773 1.85002 1.27482 1.22504 0.95903 0.98130 0.85400 1.22194 0.94351 0.90098 0.93264 1.86588 1.33428 1.54284 1.62671 1.01013 0.72565 0.71615 0.74568 1.93453 1.35485 1.83865 1.83615 1.93427 1.70728 1.62116 1.72382 1.29930 1.20202 1.13355 1.23847 1.20336 0.92486 0.92568 0.95572 1.20488 1.09845 1.03714 0.93901 1.20862 0.94873 0.94564 0.97279 1.21377 1.05136 0.98755 0.97561 1.17037 0.85591 0.90023 0.90492 1.21486 1.29884 1.00992 1.03669 0.86503 1.27117 1.00266 0.99697 0.91074 1.70454 1.10457 1.33992 1.25369 0.83754 0.75112 0.75448 0.77810 1.19541 1.19444 1.19156 0.93627 0.90100 0.91248 0.90094 0.86194 0.92431 0.93038 0.92863 0.92169 0.92570 0.92708 0.77774 0.87268 0.88418 0.88543 0.87114 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.51 59.85 0.63 2.22 16 2 N -0.99 -19.20 3.17 -121.75 -0.39 -19.58 16 3 C 0.12 2.28 5.41 -4.04 -0.02 2.26 16 4 C 0.04 0.64 6.28 37.16 0.23 0.88 16 5 O -0.37 -5.79 8.63 -40.09 -0.35 -6.14 16 6 C 0.06 0.70 6.32 37.16 0.23 0.93 16 7 C 0.08 0.78 7.43 37.16 0.28 1.06 16 8 O -0.56 -6.30 13.62 -40.09 -0.55 -6.85 16 9 S 2.70 60.42 5.10 -107.50 -0.55 59.87 16 10 O -0.97 -23.27 14.44 -57.17 -0.83 -24.09 16 11 O -1.00 -23.09 15.75 -57.17 -0.90 -23.99 16 12 C -0.78 -18.69 5.97 -38.87 -0.23 -18.92 16 13 C 0.01 0.23 9.54 -39.66 -0.38 -0.14 16 14 C -0.26 -5.61 10.05 -39.29 -0.39 -6.01 16 15 C -0.06 -1.25 10.02 -39.66 -0.40 -1.65 16 16 C -0.21 -5.04 7.86 -38.87 -0.31 -5.35 16 17 C 0.17 4.34 5.21 -106.82 -0.56 3.78 16 18 C -0.53 -12.97 6.44 -37.74 -0.24 -13.22 16 19 H 0.12 2.85 4.06 -52.49 -0.21 2.64 16 20 C 0.04 0.98 5.03 -17.34 -0.09 0.90 16 21 N -0.78 -18.89 12.45 55.55 0.69 -18.20 16 22 Si 1.06 20.03 29.98 -169.99 -5.10 14.93 16 23 H -0.27 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 25 H -0.27 -4.64 7.11 56.52 0.40 -4.24 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.08 1.27 6.62 -51.93 -0.34 0.93 16 28 H 0.07 1.16 7.11 -51.93 -0.37 0.79 16 29 H 0.08 1.42 8.11 -51.93 -0.42 1.00 16 30 H 0.12 2.36 4.40 -51.93 -0.23 2.14 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.38 2.29 9.12 45.56 0.42 2.71 16 38 H 0.11 2.30 7.32 -52.49 -0.38 1.92 16 39 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 40 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.11 2.69 6.73 -52.49 -0.35 2.34 16 42 H 0.30 7.51 6.52 -40.82 -0.27 7.25 16 LS Contribution 353.66 15.07 5.33 5.33 Total: -1.00 -30.76 353.66 -8.64 -39.40 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -4.76 Total: 12.58 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: -1.24 Total: -33.25 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.31 Total: -37.79 kcal Atomic # 8 Polarization: -58.46 SS G_CDS: -2.62 Total: -61.07 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.10 Total: 14.93 kcal Atomic # 16 Polarization: 60.42 SS G_CDS: -0.55 Total: 59.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.76 -8.64 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601410663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.444 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds