Wall clock time and date at job start Tue Mar 31 2020 05:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42898 * 113.99878 * 2 1 4 4 C 1.53001 * 109.46652 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47129 * 304.99899 * 4 3 2 6 6 O 1.42891 * 109.47063 * 55.00403 * 5 4 3 7 7 C 1.42905 * 114.00189 * 180.02562 * 6 5 4 8 8 N 1.46499 * 109.47122 * 65.00141 * 4 3 2 9 9 S 1.65599 * 119.99919 * 94.31417 * 8 4 3 10 10 O 1.42101 * 106.40448 * 310.30295 * 9 8 4 11 11 O 1.42105 * 106.40178 * 177.38600 * 9 8 4 12 12 C 1.76201 * 107.22073 * 63.84414 * 9 8 4 13 13 C 1.37641 * 120.12907 * 244.01913 * 12 9 8 14 14 C 1.38607 * 120.24830 * 180.32062 * 13 12 9 15 15 C 1.38657 * 120.49850 * 359.66781 * 14 13 12 16 16 C 1.37593 * 120.25149 * 0.02562 * 15 14 13 17 17 C 1.40700 * 120.12625 * 63.71230 * 12 9 8 18 18 C 1.41390 * 120.24410 * 359.97438 * 17 12 9 19 19 H 1.08005 * 119.99964 * 335.26616 * 18 17 12 20 20 C 1.39945 * 120.00117 * 155.27289 * 18 17 12 21 21 N 1.30822 * 119.99967 * 332.18381 * 20 18 17 22 22 Si 1.86806 * 120.00315 * 152.18702 * 20 18 17 23 23 H 1.48498 * 109.46576 * 269.99927 * 22 20 18 24 24 H 1.48505 * 109.46872 * 29.99566 * 22 20 18 25 25 H 1.48498 * 109.46926 * 149.99663 * 22 20 18 26 26 H 1.08997 * 109.47198 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46820 * 299.99824 * 1 2 3 28 28 H 1.08999 * 109.47119 * 59.99832 * 1 2 3 29 29 H 1.09004 * 109.47112 * 60.00094 * 3 2 1 30 30 H 1.08991 * 109.47317 * 299.99973 * 3 2 1 31 31 H 1.09008 * 109.46671 * 184.99866 * 4 3 2 32 32 H 1.08999 * 109.46692 * 175.00104 * 5 4 3 33 33 H 1.09000 * 109.47173 * 294.99739 * 5 4 3 34 34 H 1.08995 * 109.46970 * 59.99193 * 7 6 5 35 35 H 1.08996 * 109.47686 * 180.02562 * 7 6 5 36 36 H 1.09008 * 109.46390 * 299.99914 * 7 6 5 37 37 H 0.96996 * 119.99917 * 274.31500 * 8 4 3 38 38 H 1.07999 * 119.87417 * 0.02562 * 13 12 9 39 39 H 1.08001 * 119.74840 * 179.69622 * 14 13 12 40 40 H 1.08006 * 119.87135 * 180.02562 * 15 14 13 41 41 H 1.07996 * 120.12694 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99988 * 356.30446 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 3.9780 0.3197 1.1826 6 8 3.3067 -0.9405 1.1284 7 6 3.6505 -1.8286 2.1939 8 7 3.9767 0.5639 -1.2509 9 16 4.4313 1.5121 -2.5301 10 8 3.3945 2.4671 -2.7102 11 8 4.8578 0.6254 -3.5553 12 6 5.8583 2.4158 -2.0284 13 6 5.8103 3.7884 -1.9376 14 6 6.9333 4.5022 -1.5496 15 6 8.1142 3.8437 -1.2422 16 6 8.1833 2.4717 -1.3200 17 6 7.0494 1.7366 -1.7128 18 6 7.1085 0.3264 -1.7957 19 1 6.2050 -0.2583 -1.7036 20 6 8.3375 -0.3119 -1.9969 21 7 9.3005 0.3077 -2.6295 22 14 8.6030 -2.0487 -1.3624 23 1 9.1400 -1.9935 0.0210 24 1 7.3099 -2.7789 -1.3627 25 1 9.5701 -2.7543 -2.2411 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8463 -0.8899 31 1 3.9785 2.1765 0.0902 32 1 5.0551 0.1600 1.1327 33 1 3.7285 0.8246 2.1158 34 1 3.3938 -1.3681 3.1478 35 1 3.0997 -2.7623 2.0808 36 1 4.7209 -2.0329 2.1654 37 1 4.0025 -0.4025 -1.3302 38 1 4.8955 4.3115 -2.1742 39 1 6.8880 5.5794 -1.4858 40 1 8.9830 4.4100 -0.9406 41 1 9.1040 1.9609 -1.0797 42 1 9.1456 1.1882 -3.0059 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601429653.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:20 Heat of formation + Delta-G solvation = -152.381102 kcal Electronic energy + Delta-G solvation = -27868.304005 eV Core-core repulsion = 23940.328166 eV Total energy + Delta-G solvation = -3927.975839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -38.52729 -37.83997 -36.97314 -36.23622 -34.84460 -34.70365 -34.12368 -30.24346 -29.64371 -29.37060 -27.20808 -26.06541 -25.40109 -24.79467 -21.83487 -21.28837 -20.94174 -18.78456 -18.31150 -17.09515 -16.59284 -16.27411 -15.95164 -15.77345 -15.31980 -15.15540 -14.89038 -14.54397 -14.47958 -14.18185 -13.75638 -13.40594 -13.32726 -12.66891 -12.53551 -12.36166 -12.20576 -12.16770 -11.66636 -11.60553 -11.24821 -11.17533 -11.15037 -11.08255 -11.02209 -10.93505 -10.67632 -10.55082 -10.51033 -9.89157 -9.52409 -9.42804 -9.26883 -9.24300 -8.80118 -8.24313 -7.87942 -7.54918 -4.87099 1.51354 2.21893 2.63216 3.04537 3.15165 3.24295 3.77543 3.83131 4.02742 4.11965 4.28700 4.72762 4.97751 5.09920 5.21945 5.39535 5.40322 5.43968 5.51050 5.53993 5.57020 5.60547 5.64690 5.78052 5.81720 5.83192 5.91244 6.04114 6.07639 6.27587 6.39795 6.64074 6.88053 7.08260 7.26567 7.37023 7.37973 7.47862 7.50069 7.62084 7.70580 7.78407 7.95623 8.32486 8.53898 9.70832 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.010997 B = 0.006190 C = 0.004831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2545.617801 B = 4522.268786 C = 5794.004938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.170 3.830 5 C 0.057 3.943 6 O -0.356 6.356 7 C 0.030 3.970 8 N -1.105 6.105 9 S 2.700 3.300 10 O -0.999 6.999 11 O -0.966 6.966 12 C -0.788 4.788 13 C 0.014 3.986 14 C -0.269 4.269 15 C -0.054 4.054 16 C -0.215 4.215 17 C 0.162 3.838 18 C -0.492 4.492 19 H 0.091 0.909 20 C 0.044 3.956 21 N -0.765 5.765 22 Si 1.065 2.935 23 H -0.271 1.271 24 H -0.267 1.267 25 H -0.272 1.272 26 H 0.080 0.920 27 H 0.032 0.968 28 H 0.035 0.965 29 H 0.049 0.951 30 H 0.064 0.936 31 H 0.108 0.892 32 H 0.064 0.936 33 H 0.052 0.948 34 H 0.032 0.968 35 H 0.080 0.920 36 H 0.038 0.962 37 H 0.420 0.580 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.095 0.905 41 H 0.110 0.890 42 H 0.305 0.695 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.685 -1.690 9.419 12.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.035 4.035 4 C 0.061 3.939 5 C -0.021 4.021 6 O -0.274 6.274 7 C -0.067 4.067 8 N -0.862 5.862 9 S 2.797 3.203 10 O -0.990 6.990 11 O -0.956 6.956 12 C -0.883 4.883 13 C -0.006 4.006 14 C -0.289 4.289 15 C -0.073 4.073 16 C -0.235 4.235 17 C 0.157 3.843 18 C -0.518 4.518 19 H 0.109 0.891 20 C -0.183 4.183 21 N -0.385 5.385 22 Si 0.886 3.114 23 H -0.197 1.197 24 H -0.192 1.192 25 H -0.196 1.196 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.126 0.874 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.051 0.949 35 H 0.099 0.901 36 H 0.056 0.944 37 H 0.255 0.745 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.128 0.872 42 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.005 -2.878 8.528 12.045 hybrid contribution -0.437 1.611 0.632 1.785 sum -8.442 -1.267 9.160 12.521 Atomic orbital electron populations 1.22684 0.82859 1.02030 0.99187 1.88141 1.17674 1.26204 1.95117 1.23101 0.93904 0.85820 1.00693 1.20754 0.92370 0.96475 0.84290 1.22737 0.97090 0.85619 0.96685 1.88120 1.66463 1.25171 1.47676 1.22688 0.99742 0.94113 0.90122 1.55551 1.82590 1.20049 1.27999 1.01129 0.73615 0.72866 0.72702 1.93440 1.56944 1.63170 1.85414 1.93541 1.82976 1.65090 1.54030 1.29804 1.18242 1.04756 1.35473 1.20326 0.96985 0.92251 0.91070 1.20421 0.94736 0.97669 1.16063 1.20814 0.96118 0.94550 0.95809 1.21303 0.99502 0.93585 1.09070 1.16959 0.89790 0.92323 0.85232 1.20990 0.98008 0.91795 1.40989 0.89149 1.27175 0.91372 1.07082 0.92628 1.70444 1.35067 1.15798 1.17234 0.83641 0.77769 0.72568 0.77373 1.19677 1.19191 1.19628 0.90184 0.94932 0.94675 0.93257 0.91817 0.87420 0.91751 0.92997 0.94899 0.90124 0.94383 0.74534 0.87314 0.88609 0.88707 0.87217 0.88115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 11.01 101.05 1.11 1.46 16 2 O -0.35 -5.30 8.21 -58.58 -0.48 -5.78 16 3 C 0.04 0.64 5.77 37.16 0.21 0.85 16 4 C 0.17 2.65 3.06 -67.93 -0.21 2.44 16 5 C 0.06 0.80 5.73 37.16 0.21 1.02 16 6 O -0.36 -5.21 7.97 -58.58 -0.47 -5.67 16 7 C 0.03 0.35 11.01 101.05 1.11 1.46 16 8 N -1.11 -20.25 4.48 -4.89 -0.02 -20.27 16 9 S 2.70 59.12 4.86 -107.50 -0.52 58.60 16 10 O -1.00 -22.32 16.13 -57.17 -0.92 -23.25 16 11 O -0.97 -24.47 16.61 -57.17 -0.95 -25.42 16 12 C -0.79 -18.29 5.70 -38.87 -0.22 -18.51 16 13 C 0.01 0.30 9.53 -39.66 -0.38 -0.08 16 14 C -0.27 -5.64 10.05 -39.29 -0.39 -6.04 16 15 C -0.05 -1.16 10.02 -39.66 -0.40 -1.56 16 16 C -0.21 -5.07 7.98 -38.88 -0.31 -5.38 16 17 C 0.16 3.97 5.31 -106.83 -0.57 3.41 16 18 C -0.49 -12.05 7.69 -37.74 -0.29 -12.34 16 19 H 0.09 2.12 5.63 -52.48 -0.30 1.83 16 20 C 0.04 1.04 4.88 -17.34 -0.08 0.96 16 21 N -0.76 -19.14 12.38 55.55 0.69 -18.45 16 22 Si 1.06 20.36 30.01 -169.99 -5.10 15.26 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 24 H -0.27 -4.89 7.11 56.52 0.40 -4.49 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 27 H 0.03 0.33 8.14 -51.92 -0.42 -0.10 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 1.00 7.51 -51.93 -0.39 0.61 16 31 H 0.11 1.61 7.79 -51.92 -0.40 1.21 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.42 7.55 8.31 -34.47 -0.29 7.26 16 38 H 0.11 2.19 7.33 -52.49 -0.38 1.81 16 39 H 0.10 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.09 1.76 8.06 -52.48 -0.42 1.34 16 41 H 0.11 2.61 6.51 -52.49 -0.34 2.27 16 42 H 0.30 7.88 6.74 -40.82 -0.27 7.60 16 LS Contribution 358.94 15.07 5.41 5.41 Total: -1.00 -30.52 358.94 -8.39 -38.91 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -5.82 Total: 12.99 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: -0.20 Total: -32.32 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.67 Total: -38.73 kcal Atomic # 8 Polarization: -57.30 SS G_CDS: -2.82 Total: -60.12 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.10 Total: 15.26 kcal Atomic # 16 Polarization: 59.12 SS G_CDS: -0.52 Total: 58.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.52 -8.39 -38.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601429653.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.468 kcal (2) G-P(sol) polarization free energy of solvation -30.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds