Wall clock time and date at job start Tue Mar 31 2020 06:12:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99581 * 2 1 4 4 H 1.48498 * 109.47407 * 239.99992 * 3 2 1 5 5 H 1.48503 * 109.47518 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47179 * 119.99978 * 3 2 1 7 7 C 1.37872 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99903 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00295 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47021 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46643 * 180.02562 * 10 9 7 12 12 S 1.81399 * 109.46769 * 180.02562 * 11 10 9 13 13 O 1.42099 * 110.54379 * 68.37748 * 12 11 10 14 14 O 1.42100 * 110.54506 * 291.62266 * 12 11 10 15 15 N 1.65603 * 104.44637 * 180.02562 * 12 11 10 16 16 C 1.46496 * 119.99991 * 65.00392 * 15 12 11 17 17 C 1.50701 * 109.47172 * 164.99708 * 16 15 12 18 18 C 1.40065 * 125.82867 * 94.99627 * 17 16 15 19 19 C 1.35197 * 107.72955 * 179.97438 * 18 17 16 20 20 N 1.35641 * 107.72198 * 0.08846 * 19 18 17 21 21 N 1.31097 * 125.83183 * 274.97208 * 17 16 15 22 22 C 1.46683 * 123.71243 * 179.83222 * 20 19 18 23 23 C 1.53529 * 107.98276 * 343.07719 * 22 20 19 24 24 C 1.53235 * 109.27549 * 47.14788 * 23 22 20 25 25 O 1.35979 * 128.72247 * 180.21724 * 19 18 17 26 26 H 0.96999 * 120.00444 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46640 * 60.00056 * 9 7 2 28 28 H 1.08993 * 109.47011 * 300.00640 * 9 7 2 29 29 H 1.08996 * 109.46779 * 60.00727 * 10 9 7 30 30 H 1.08997 * 109.47375 * 299.99759 * 10 9 7 31 31 H 1.08997 * 109.47006 * 59.99997 * 11 10 9 32 32 H 1.08993 * 109.47131 * 300.00383 * 11 10 9 33 33 H 0.96995 * 120.00036 * 244.99567 * 15 12 11 34 34 H 1.08998 * 109.47814 * 44.99465 * 16 15 12 35 35 H 1.08998 * 109.46886 * 284.99663 * 16 15 12 36 36 H 1.08004 * 126.13718 * 359.68729 * 18 17 16 37 37 H 1.09001 * 109.75945 * 102.69970 * 22 20 19 38 38 H 1.09002 * 109.75984 * 223.44995 * 22 20 19 39 39 H 1.09001 * 109.50703 * 167.08834 * 23 22 20 40 40 H 1.09007 * 109.50480 * 287.20666 * 23 22 20 41 41 H 1.09005 * 109.51006 * 55.58707 * 24 23 22 42 42 H 1.09003 * 109.51395 * 175.73063 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 6 2.2456 -3.6620 -0.0005 11 6 1.4806 -4.9870 -0.0012 12 16 2.6595 -6.3657 -0.0004 13 8 3.3553 -6.4261 1.2371 14 8 3.3571 -6.4260 -1.2369 15 7 1.7091 -7.7219 -0.0019 16 6 0.8510 -8.0137 -1.1528 17 6 0.3847 -9.4450 -1.0816 18 6 -0.8263 -9.8865 -0.5333 19 6 -0.8702 -11.2316 -0.6616 20 7 0.2766 -11.6261 -1.2692 21 7 1.0428 -10.4895 -1.5226 22 6 0.5952 -13.0243 -1.5775 23 6 -0.3323 -13.9174 -0.7413 24 6 -1.7706 -13.4018 -0.8573 25 8 -1.8515 -12.0911 -0.2777 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 2.8721 -3.6042 0.8895 30 1 2.8722 -3.6042 -0.8905 31 1 0.8542 -5.0445 -0.8914 32 1 0.8536 -5.0450 0.8885 33 1 1.7208 -8.3231 0.7592 34 1 1.4135 -7.8603 -2.0737 35 1 -0.0128 -7.3491 -1.1397 36 1 -1.5864 -9.2644 -0.0841 37 1 0.4317 -13.2142 -2.6383 38 1 1.6345 -13.2305 -1.3216 39 1 -0.2819 -14.9415 -1.1109 40 1 -0.0193 -13.8908 0.3025 41 1 -2.0563 -13.3533 -1.9082 42 1 -2.4431 -14.0763 -0.3273 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601459078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:43 Heat of formation + Delta-G solvation = -39.189491 kcal Electronic energy + Delta-G solvation = -25142.769499 eV Core-core repulsion = 21251.994768 eV Total energy + Delta-G solvation = -3890.774731 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.17754 -39.08678 -36.84431 -35.81792 -35.62226 -34.77618 -34.61951 -32.14538 -31.21871 -29.74854 -27.76165 -27.49005 -25.71879 -23.68027 -23.46497 -20.89969 -20.60312 -20.21176 -19.15645 -18.33676 -17.33841 -16.98371 -16.60646 -16.29977 -16.06716 -15.76339 -15.61132 -15.31670 -15.01920 -14.53663 -14.46608 -14.17292 -13.90457 -13.77211 -13.15209 -12.84346 -12.53659 -12.24428 -12.22475 -11.89881 -11.85807 -11.79662 -11.74820 -11.71272 -11.68761 -11.18221 -10.88391 -10.86526 -10.83030 -10.40217 -9.89961 -9.69793 -9.42077 -9.28072 -9.04652 -8.70823 -8.36890 -6.02125 -4.05007 0.49691 1.47356 1.85643 2.27497 2.59195 3.07885 3.35022 3.38708 3.42084 3.59569 3.80944 4.00228 4.14610 4.20898 4.41072 4.45753 4.49294 4.58679 4.70581 4.84998 4.91056 5.05784 5.12488 5.14651 5.24640 5.29514 5.34426 5.44020 5.59865 5.71890 5.83284 5.95519 6.26010 6.32464 6.50485 6.89693 6.91324 6.94823 7.34500 7.61099 7.71590 7.96063 8.36781 9.01081 9.59448 11.09021 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.027369 B = 0.002084 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.806560 B =13434.308823 C =14079.574904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.895 3.105 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.526 4.526 8 H 0.057 0.943 9 C 0.031 3.969 10 C -0.106 4.106 11 C -0.609 4.609 12 S 2.602 3.398 13 O -0.962 6.962 14 O -0.960 6.960 15 N -1.120 6.120 16 C 0.198 3.802 17 C 0.087 3.913 18 C -0.268 4.268 19 C 0.265 3.735 20 N -0.403 5.403 21 N -0.262 5.262 22 C 0.129 3.871 23 C -0.175 4.175 24 C 0.049 3.951 25 O -0.289 6.289 26 H 0.262 0.738 27 H 0.021 0.979 28 H 0.021 0.979 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.417 0.583 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.161 0.839 37 H 0.089 0.911 38 H 0.102 0.898 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.073 0.927 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.274 -31.129 -2.555 31.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.565 4.565 8 H 0.076 0.924 9 C -0.008 4.008 10 C -0.146 4.146 11 C -0.741 4.741 12 S 2.698 3.302 13 O -0.952 6.952 14 O -0.950 6.950 15 N -0.878 5.878 16 C 0.070 3.930 17 C -0.081 4.081 18 C -0.298 4.298 19 C 0.098 3.902 20 N -0.198 5.198 21 N -0.088 5.088 22 C 0.008 3.992 23 C -0.214 4.214 24 C -0.026 4.026 25 O -0.196 6.196 26 H 0.071 0.929 27 H 0.039 0.961 28 H 0.039 0.961 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.147 0.853 32 H 0.149 0.851 33 H 0.250 0.750 34 H 0.116 0.884 35 H 0.110 0.890 36 H 0.178 0.822 37 H 0.107 0.893 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -3.639 -31.479 -3.162 31.846 hybrid contribution -1.029 0.731 0.627 1.409 sum -4.668 -30.748 -2.535 31.204 Atomic orbital electron populations 1.69946 1.06063 1.26851 1.50588 1.25018 0.94892 0.99341 0.95152 0.86616 0.79557 0.82859 0.78740 1.20136 1.21290 1.20158 1.21226 0.93229 0.90935 1.51061 0.92426 1.19061 0.93540 0.90416 0.97761 1.21503 0.99396 0.91673 1.02002 1.30552 1.16384 1.15725 1.11412 1.05294 0.75571 0.75095 0.74232 1.93579 1.70624 1.85865 1.45169 1.93572 1.70133 1.85633 1.45646 1.55713 1.62299 1.42594 1.27193 1.19566 0.94871 0.88555 0.89963 1.22009 0.92895 0.95073 0.98137 1.20292 1.02657 0.90171 1.16678 1.19493 0.83306 0.90769 0.96639 1.49108 1.14137 1.07050 1.49475 1.77407 1.16818 0.90245 1.24295 1.21900 1.01612 0.75049 1.00662 1.22649 0.95097 1.00994 1.02660 1.23116 0.97348 0.82094 1.00043 1.86643 1.44349 1.22588 1.65997 0.92870 0.96059 0.96099 0.91579 0.91525 0.85323 0.85117 0.74979 0.88371 0.89047 0.82187 0.89270 0.87940 0.87133 0.89228 0.90901 0.86239 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.63 13.29 55.43 0.74 -25.90 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 7 C -0.53 -14.86 9.11 -34.44 -0.31 -15.18 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 9 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 10 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 11 C -0.61 -9.15 6.07 37.16 0.23 -8.92 16 12 S 2.60 38.56 5.46 -107.50 -0.59 37.98 16 13 O -0.96 -17.21 18.08 -57.54 -1.04 -18.25 16 14 O -0.96 -17.11 17.49 -57.54 -1.01 -18.12 16 15 N -1.12 -12.94 5.88 -11.66 -0.07 -13.01 16 16 C 0.20 2.09 6.69 -5.19 -0.03 2.06 16 17 C 0.09 0.99 6.62 -82.22 -0.54 0.45 16 18 C -0.27 -2.84 10.75 -39.98 -0.43 -3.27 16 19 C 0.27 2.71 7.57 -16.95 -0.13 2.58 16 20 N -0.40 -4.01 4.06 -61.08 -0.25 -4.26 16 21 N -0.26 -3.28 12.63 33.75 0.43 -2.85 16 22 C 0.13 0.70 7.41 -3.67 -0.03 0.68 16 23 C -0.18 -0.52 6.16 -26.34 -0.16 -0.68 16 24 C 0.05 0.20 7.01 37.28 0.26 0.46 16 25 O -0.29 -2.47 10.65 -19.67 -0.21 -2.68 16 26 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 27 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 30 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.13 1.66 8.14 -51.93 -0.42 1.24 16 32 H 0.13 1.74 8.14 -51.93 -0.42 1.32 16 33 H 0.42 4.39 8.61 -34.47 -0.30 4.09 16 34 H 0.10 1.07 7.69 -51.93 -0.40 0.67 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 37 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.11 0.00 8.14 -51.93 -0.42 -0.42 16 40 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 42 H 0.12 0.20 8.14 -51.93 -0.42 -0.22 16 LS Contribution 367.63 15.07 5.54 5.54 Total: -1.00 -38.54 367.63 -9.16 -47.70 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.16 Total: -0.91 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -1.53 Total: -21.92 kcal Atomic # 7 Polarization: -46.86 SS G_CDS: 0.85 Total: -46.01 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -2.26 Total: -39.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 38.56 SS G_CDS: -0.59 Total: 37.98 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -38.54 -9.16 -47.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601459078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.507 kcal (2) G-P(sol) polarization free energy of solvation -38.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds