Wall clock time and date at job start Tue Mar 31 2020 06:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.41383 * 126.80434 * 2 1 4 4 C 1.35443 * 103.98911 * 180.02562 * 3 2 1 5 5 C 1.50698 * 126.77882 * 179.97438 * 4 3 2 6 6 S 1.81408 * 109.47294 * 90.00026 * 5 4 3 7 7 O 1.42105 * 110.53952 * 68.37700 * 6 5 4 8 8 O 1.42094 * 110.53988 * 291.62968 * 6 5 4 9 9 N 1.65601 * 104.44871 * 180.02562 * 6 5 4 10 10 C 1.47072 * 120.88096 * 269.72015 * 9 6 5 11 11 C 1.53695 * 108.27828 * 128.75684 * 10 9 6 12 12 N 1.46898 * 109.25460 * 54.08261 * 11 10 9 13 13 C 1.46898 * 111.00248 * 172.61061 * 12 11 10 14 14 C 1.50698 * 109.47211 * 59.38044 * 13 12 11 15 15 H 1.07997 * 119.99939 * 5.02450 * 14 13 12 16 16 C 1.37875 * 119.99899 * 185.01988 * 14 13 12 17 17 N 1.31511 * 120.00511 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99878 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47222 * 90.00042 * 18 16 14 20 20 H 1.48507 * 109.46862 * 209.99896 * 18 16 14 21 21 H 1.48502 * 109.46798 * 329.99820 * 18 16 14 22 22 C 1.46903 * 111.27011 * 296.75663 * 12 11 10 23 23 C 1.47080 * 120.87806 * 90.00378 * 9 6 5 24 24 O 1.34037 * 106.44683 * 0.24136 * 4 3 2 25 25 N 1.20922 * 111.56583 * 359.56552 * 24 4 3 26 26 H 1.09001 * 109.47218 * 89.99734 * 1 2 3 27 27 H 1.08999 * 109.47170 * 209.99891 * 1 2 3 28 28 H 1.08999 * 109.47109 * 330.00052 * 1 2 3 29 29 H 1.08004 * 128.00565 * 0.03938 * 3 2 1 30 30 H 1.08999 * 109.47213 * 330.00033 * 5 4 3 31 31 H 1.08999 * 109.47373 * 210.00418 * 5 4 3 32 32 H 1.09005 * 109.63146 * 248.52591 * 10 9 6 33 33 H 1.09006 * 109.63157 * 9.10978 * 10 9 6 34 34 H 1.09001 * 109.65191 * 294.08202 * 11 10 9 35 35 H 1.09001 * 109.42431 * 173.94867 * 11 10 9 36 36 H 1.09000 * 109.47220 * 179.38414 * 13 12 11 37 37 H 1.09007 * 109.47217 * 299.38291 * 13 12 11 38 38 H 0.97005 * 120.00528 * 179.97438 * 17 16 14 39 39 H 1.09000 * 109.49337 * 303.14516 * 22 12 11 40 40 H 1.08999 * 109.49027 * 183.06100 * 22 12 11 41 41 H 1.08994 * 109.63009 * 350.89112 * 23 9 6 42 42 H 1.09005 * 109.62860 * 111.47614 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6024 0.6068 -0.0006 5 6 4.9021 1.3696 -0.0014 6 16 5.4246 1.6759 1.7086 7 8 5.7957 0.4592 2.3421 8 8 4.5434 2.5928 2.3425 9 7 6.8469 2.5114 1.5627 10 6 8.1350 1.8042 1.5020 11 6 8.9092 2.3169 0.2772 12 7 9.0077 3.7811 0.3445 13 6 9.8880 4.2986 -0.7115 14 6 9.3440 3.9000 -2.0591 15 1 8.3941 3.3910 -2.1290 16 6 10.0590 4.1853 -3.2030 17 7 11.2154 4.8057 -3.1181 18 14 9.3843 3.6918 -4.8736 19 1 8.5521 4.7951 -5.4170 20 1 10.5112 3.4186 -5.8014 21 1 8.5534 2.4693 -4.7304 22 6 7.6808 4.4081 0.2780 23 6 6.8559 3.9807 1.4966 24 8 3.4538 -0.7252 -0.0063 25 7 2.2868 -1.0423 -0.0006 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 2.0710 2.1743 0.0006 30 1 4.7648 2.3209 -0.5153 31 1 5.6657 0.7859 -0.5156 32 1 8.7054 2.0035 2.4092 33 1 7.9603 0.7327 1.4039 34 1 8.3854 2.0292 -0.6344 35 1 9.9099 1.8848 0.2739 36 1 9.9344 5.3856 -0.6454 37 1 10.8883 3.8839 -0.5863 38 1 11.7187 5.0060 -3.9228 39 1 7.1741 4.0912 -0.6336 40 1 7.7908 5.4925 0.2753 41 1 5.8351 4.3489 1.3952 42 1 7.3057 4.3852 2.4034 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535667.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:37:58 Heat of formation + Delta-G solvation = 4.414229 kcal Electronic energy + Delta-G solvation = -26784.403640 eV Core-core repulsion = 22895.519709 eV Total energy + Delta-G solvation = -3888.883932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.27652 -38.46034 -37.31528 -36.10265 -35.15923 -34.57128 -33.97282 -32.32826 -30.76871 -29.02555 -28.56705 -27.77611 -25.09985 -23.46951 -23.33079 -22.16812 -20.88099 -19.99620 -18.84234 -18.18385 -17.76996 -17.50428 -16.50899 -16.29406 -16.19126 -15.13337 -14.90536 -14.66874 -14.47109 -14.22872 -14.15604 -13.91533 -13.71219 -13.41834 -13.22800 -13.22000 -12.81742 -12.57012 -12.42557 -12.23781 -11.89532 -11.77463 -11.74881 -11.47254 -11.25659 -11.13037 -11.07955 -10.74117 -10.63474 -10.34629 -10.32261 -9.97074 -9.82901 -9.62435 -8.91015 -8.55176 -7.33928 -6.14748 -4.25030 -0.11686 1.13267 1.87180 2.35480 2.68305 3.17371 3.25849 3.26094 3.60190 3.81311 3.84394 4.04847 4.28967 4.53206 4.54033 4.71542 4.80804 4.88111 5.07789 5.13021 5.13335 5.15527 5.37774 5.40095 5.42628 5.48455 5.69339 5.72959 5.75785 5.80286 6.02428 6.12802 6.40374 6.47869 6.59156 6.65424 7.13013 7.39486 7.77010 7.88079 7.88964 8.12303 8.14899 8.84888 9.42693 10.90232 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013689 B = 0.003730 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.881613 B = 7505.730780 C = 8800.646346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.016 3.984 3 C -0.208 4.208 4 C -0.031 4.031 5 C -0.559 4.559 6 S 2.613 3.387 7 O -0.942 6.942 8 O -0.944 6.944 9 N -0.990 5.990 10 C 0.121 3.879 11 C 0.049 3.951 12 N -0.538 5.538 13 C 0.187 3.813 14 C -0.554 4.554 15 H 0.056 0.944 16 C 0.067 3.933 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.046 3.954 23 C 0.123 3.877 24 O 0.111 5.889 25 N -0.356 5.356 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.085 0.915 29 H 0.182 0.818 30 H 0.163 0.837 31 H 0.158 0.842 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.043 0.957 35 H 0.080 0.920 36 H 0.029 0.971 37 H 0.037 0.963 38 H 0.264 0.736 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.766 -5.192 6.983 18.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.143 4.143 3 C -0.231 4.231 4 C -0.096 4.096 5 C -0.684 4.684 6 S 2.702 3.298 7 O -0.932 6.932 8 O -0.934 6.934 9 N -0.830 5.830 10 C -0.004 4.004 11 C -0.081 4.081 12 N -0.262 5.262 13 C 0.062 3.938 14 C -0.593 4.593 15 H 0.074 0.926 16 C -0.136 4.136 17 N -0.526 5.526 18 Si 0.715 3.285 19 H -0.206 1.206 20 H -0.210 1.210 21 H -0.200 1.200 22 C -0.084 4.084 23 C -0.002 4.002 24 O 0.042 5.958 25 N -0.059 5.059 26 H 0.101 0.899 27 H 0.097 0.903 28 H 0.104 0.896 29 H 0.199 0.801 30 H 0.181 0.819 31 H 0.176 0.824 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.059 0.941 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.037 -6.570 8.119 19.139 hybrid contribution -0.476 0.534 -2.889 2.976 sum -16.513 -6.036 5.231 18.344 Atomic orbital electron populations 1.20211 0.85380 1.04168 1.03634 1.23673 0.99380 0.88467 1.02735 1.22619 0.90641 1.01933 1.07911 1.23075 0.95970 0.84437 1.06098 1.29565 1.00111 1.08212 1.30508 1.05217 0.73720 0.74293 0.76534 1.93612 1.81756 1.46752 1.71084 1.93592 1.65611 1.63149 1.71055 1.57725 1.20544 1.15881 1.88823 1.21855 0.82811 0.95226 1.00491 1.22357 1.00133 0.90514 0.95138 1.62403 1.10393 1.03914 1.49524 1.19780 0.92163 0.95728 0.86150 1.21711 1.05934 1.39149 0.92513 0.92612 1.24952 0.94719 0.94827 0.99122 1.69928 1.13134 1.40461 1.29065 0.86681 0.78725 0.78850 0.84241 1.20620 1.21037 1.20044 1.22298 0.91041 0.99789 0.95258 1.21726 1.00635 0.77388 1.00477 1.84886 1.21774 1.21835 1.67284 1.73871 0.89109 1.23979 1.18954 0.89906 0.90276 0.89613 0.80059 0.81943 0.82357 0.90219 0.89601 0.93844 0.90132 0.95267 0.94516 0.92667 0.94135 0.90210 0.89726 0.90242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.47 36.00 0.38 -0.17 16 2 C 0.02 0.18 7.33 -82.10 -0.60 -0.42 16 3 C -0.21 -2.24 11.06 -39.38 -0.44 -2.68 16 4 C -0.03 -0.37 6.75 -35.31 -0.24 -0.61 16 5 C -0.56 -5.82 6.74 36.00 0.24 -5.57 16 6 S 2.61 33.60 5.40 -107.50 -0.58 33.02 16 7 O -0.94 -14.64 16.78 -57.54 -0.97 -15.61 16 8 O -0.94 -13.77 16.79 -57.54 -0.97 -14.74 16 9 N -0.99 -12.99 3.25 -112.97 -0.37 -13.35 16 10 C 0.12 1.64 6.50 -3.37 -0.02 1.62 16 11 C 0.05 0.81 5.17 -3.46 -0.02 0.79 16 12 N -0.54 -10.06 4.83 -235.46 -1.14 -11.20 16 13 C 0.19 4.38 5.11 -4.98 -0.03 4.35 16 14 C -0.55 -13.91 7.75 -34.44 -0.27 -14.18 16 15 H 0.06 1.36 5.88 -52.49 -0.31 1.05 16 16 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 17 N -0.89 -24.78 13.29 55.43 0.74 -24.04 16 18 Si 0.89 20.22 29.54 -169.99 -5.02 15.20 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 20 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 22 C 0.05 0.75 5.24 -3.70 -0.02 0.73 16 23 C 0.12 1.60 6.46 -3.60 -0.02 1.58 16 24 O 0.11 1.53 11.20 17.19 0.19 1.72 16 25 N -0.36 -4.86 12.07 33.42 0.40 -4.46 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.18 1.42 8.06 -52.48 -0.42 0.99 16 30 H 0.16 1.32 8.14 -51.92 -0.42 0.90 16 31 H 0.16 1.44 8.14 -51.92 -0.42 1.02 16 32 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.09 1.02 7.19 -51.93 -0.37 0.65 16 34 H 0.04 0.76 6.79 -51.93 -0.35 0.41 16 35 H 0.08 1.35 8.11 -51.93 -0.42 0.93 16 36 H 0.03 0.73 8.07 -51.93 -0.42 0.31 16 37 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 39 H 0.04 0.68 6.92 -51.93 -0.36 0.32 16 40 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 41 H 0.08 0.93 7.19 -51.93 -0.37 0.56 16 42 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 358.21 15.07 5.40 5.40 Total: -1.00 -32.79 358.21 -9.40 -42.19 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -5.97 Total: -1.24 kcal Atomic # 6 Polarization: -11.77 SS G_CDS: -1.13 Total: -12.90 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: -0.36 Total: -53.06 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -1.74 Total: -28.62 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Atomic # 16 Polarization: 33.60 SS G_CDS: -0.58 Total: 33.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.79 -9.40 -42.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535667.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.605 kcal (2) G-P(sol) polarization free energy of solvation -32.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds