Wall clock time and date at job start Tue Mar 31 2020 04:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99669 * 2 1 4 4 H 1.48497 * 109.46723 * 239.99586 * 3 2 1 5 5 H 1.48494 * 109.46987 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46982 * 119.99976 * 3 2 1 7 7 C 1.37878 * 120.00504 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00089 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99659 * 0.02562 * 7 2 1 10 10 N 1.46904 * 109.47266 * 180.02562 * 9 7 2 11 11 C 1.46895 * 111.00100 * 170.00107 * 10 9 7 12 12 C 1.53240 * 109.33751 * 187.25273 * 11 10 9 13 13 N 1.47080 * 108.51910 * 306.16647 * 12 11 10 14 14 S 1.65606 * 120.88156 * 231.18859 * 13 12 11 15 15 O 1.42095 * 106.40177 * 336.45912 * 14 13 12 16 16 O 1.42096 * 106.40044 * 203.54078 * 14 13 12 17 17 C 1.76196 * 107.21809 * 89.99958 * 14 13 12 18 18 C 1.38232 * 120.40625 * 269.97760 * 17 14 13 19 19 N 1.31849 * 120.82074 * 180.02562 * 18 17 14 20 20 C 1.31870 * 121.75267 * 359.97438 * 19 18 17 21 21 C 1.38423 * 120.72298 * 359.73913 * 20 19 18 22 22 F 1.35106 * 120.44270 * 180.26434 * 21 20 19 23 23 C 1.38596 * 120.40488 * 90.00195 * 17 14 13 24 24 C 1.47083 * 118.23816 * 51.45847 * 13 12 11 25 25 C 1.46905 * 110.99175 * 294.30022 * 10 9 7 26 26 H 0.97000 * 120.00551 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47328 * 59.99825 * 9 7 2 28 28 H 1.09004 * 109.46942 * 300.00029 * 9 7 2 29 29 H 1.08997 * 109.49736 * 67.28869 * 11 10 9 30 30 H 1.08999 * 109.49321 * 307.20490 * 11 10 9 31 31 H 1.09000 * 109.63008 * 186.46052 * 12 11 10 32 32 H 1.09003 * 109.63073 * 65.87364 * 12 11 10 33 33 H 1.08003 * 119.58907 * 0.02562 * 18 17 14 34 34 H 1.07991 * 119.63876 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.79700 * 359.95001 * 23 17 14 36 36 H 1.09000 * 109.62701 * 68.25140 * 24 13 12 37 37 H 1.09001 * 109.62778 * 188.82985 * 24 13 12 38 38 H 1.08993 * 109.49212 * 292.70238 * 25 10 9 39 39 H 1.08994 * 109.49460 * 52.75838 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2058 -3.6157 0.0018 11 6 1.5212 -4.8934 0.2399 12 6 2.5637 -6.0029 0.4140 13 7 3.4623 -5.9864 -0.7502 14 16 3.7705 -7.3705 -1.6058 15 8 3.5180 -8.4535 -0.7213 16 8 5.0191 -7.1716 -2.2543 17 6 2.5589 -7.4763 -2.8806 18 6 1.3620 -8.1302 -2.6557 19 7 0.4498 -8.2148 -3.6040 20 6 0.6373 -7.6840 -4.7966 21 6 1.8085 -7.0087 -5.0939 22 9 1.9924 -6.4626 -6.3159 23 6 2.7945 -6.9054 -4.1214 24 6 4.0847 -4.7093 -1.1309 25 6 2.9777 -3.6495 -1.2476 26 1 -0.4851 0.8400 -0.0004 27 1 0.6248 -2.5571 -0.8896 28 1 0.6241 -2.5566 0.8903 29 1 0.8802 -5.1266 -0.6102 30 1 0.9154 -4.8186 1.1430 31 1 2.0631 -6.9692 0.4765 32 1 3.1387 -5.8258 1.3229 33 1 1.1716 -8.5774 -1.6913 34 1 -0.1332 -7.7733 -5.5480 35 1 3.7204 -6.3881 -4.3252 36 1 4.8031 -4.4102 -0.3676 37 1 4.5902 -4.8199 -2.0902 38 1 2.3165 -3.9001 -2.0770 39 1 3.4278 -2.6725 -1.4237 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601535888.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:59:24 Heat of formation + Delta-G solvation = -62.092893 kcal Electronic energy + Delta-G solvation = -26532.633403 eV Core-core repulsion = 22517.405201 eV Total energy + Delta-G solvation = -4015.228202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 329.100 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.39462 -40.45454 -38.49206 -37.53867 -36.09828 -34.53777 -33.17904 -32.39376 -31.50164 -30.89054 -27.93565 -25.21288 -24.84576 -24.16408 -23.45011 -21.88678 -20.39313 -19.25236 -18.49529 -17.89277 -17.72598 -17.30003 -16.45393 -16.35389 -16.23596 -15.85403 -14.92497 -14.55407 -14.51537 -14.34683 -14.25246 -14.04361 -13.82465 -13.75214 -13.59666 -13.02749 -12.62725 -12.40038 -12.32136 -12.12253 -11.98480 -11.92538 -11.35127 -11.16292 -10.92211 -10.87638 -10.82245 -10.66241 -10.47670 -10.14156 -9.93054 -9.62017 -9.40190 -8.98758 -8.51451 -7.40438 -6.10888 -4.13189 -0.11436 0.20397 0.48761 2.62083 2.98965 3.28194 3.33110 3.35339 3.40900 3.49602 3.81453 4.03903 4.26161 4.29930 4.34436 4.46469 4.60776 4.79495 4.93218 5.19661 5.23149 5.25427 5.28848 5.38739 5.52758 5.59584 5.67831 5.90913 5.98756 6.05075 6.19969 6.34402 6.38251 6.59235 7.15177 7.15476 7.20826 7.68667 7.95224 8.05861 8.41605 8.93856 9.51749 10.99813 Molecular weight = 329.10amu Principal moments of inertia in cm(-1) A = 0.013746 B = 0.003841 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2036.395776 B = 7287.603621 C = 8099.246738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.899 3.101 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.064 0.936 9 C 0.194 3.806 10 N -0.532 5.532 11 C 0.039 3.961 12 C 0.126 3.874 13 N -0.990 5.990 14 S 2.697 3.303 15 O -0.948 6.948 16 O -0.950 6.950 17 C -0.708 4.708 18 C 0.190 3.810 19 N -0.467 5.467 20 C 0.127 3.873 21 C 0.031 3.969 22 F -0.122 7.122 23 C -0.006 4.006 24 C 0.123 3.877 25 C 0.050 3.950 26 H 0.263 0.737 27 H -0.010 1.010 28 H 0.032 0.968 29 H 0.024 0.976 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.181 0.819 34 H 0.177 0.823 35 H 0.165 0.835 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.022 0.978 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.980 -15.987 -6.952 17.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.726 3.274 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.201 1.201 7 C -0.550 4.550 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.257 5.257 11 C -0.091 4.091 12 C 0.001 3.999 13 N -0.831 5.831 14 S 2.783 3.217 15 O -0.939 6.939 16 O -0.940 6.940 17 C -0.793 4.793 18 C 0.031 3.969 19 N -0.175 5.175 20 C -0.031 4.031 21 C 0.009 3.991 22 F -0.101 7.101 23 C -0.033 4.033 24 C -0.002 4.002 25 C -0.080 4.080 26 H 0.072 0.928 27 H 0.008 0.992 28 H 0.050 0.950 29 H 0.043 0.957 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.104 0.896 33 H 0.198 0.802 34 H 0.194 0.806 35 H 0.183 0.817 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.040 0.960 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.003 -16.803 -6.314 18.391 hybrid contribution -0.168 1.699 -1.618 2.352 sum 3.834 -15.104 -7.932 17.486 Atomic orbital electron populations 1.69939 1.06118 1.27032 1.50624 1.24987 0.94849 0.99371 0.95284 0.86552 0.79434 0.82679 0.78689 1.20266 1.21374 1.20087 1.21096 0.93464 0.89844 1.50592 0.91785 1.19727 0.89964 0.87191 0.96177 1.62014 1.27890 1.02536 1.33262 1.22414 0.94766 0.90985 1.00919 1.21682 0.91418 0.99092 0.87715 1.57712 1.60227 1.24406 1.40717 1.02120 0.73603 0.72995 0.72967 1.93591 1.85816 1.51479 1.62971 1.93589 1.38351 1.85620 1.76410 1.32341 1.18536 1.12516 1.15945 1.22695 0.86219 0.89424 0.98543 1.67907 1.31136 1.18004 1.00427 1.23326 0.94585 0.90345 0.94872 1.18757 0.97318 1.00572 0.82500 1.91575 1.95442 1.83435 1.39652 1.21396 0.98726 0.92795 0.90402 1.21869 0.95785 0.81595 1.00970 1.22429 0.95068 0.99279 0.91230 0.92785 0.99228 0.94986 0.95735 0.89847 0.89572 0.89629 0.80229 0.80615 0.81739 0.89600 0.89715 0.95957 0.88351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.80 13.29 55.43 0.74 -25.07 16 2 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 3 Si 0.90 20.84 29.54 -169.99 -5.02 15.82 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 7 C -0.51 -13.53 8.41 -34.44 -0.29 -13.82 16 8 H 0.06 1.65 7.13 -52.49 -0.37 1.28 16 9 C 0.19 4.73 4.72 -4.97 -0.02 4.70 16 10 N -0.53 -10.27 4.62 -235.47 -1.09 -11.36 16 11 C 0.04 0.61 5.62 -3.70 -0.02 0.59 16 12 C 0.13 1.57 6.53 -3.60 -0.02 1.55 16 13 N -0.99 -12.49 3.32 -112.97 -0.38 -12.86 16 14 S 2.70 32.55 5.71 -107.50 -0.61 31.94 16 15 O -0.95 -12.69 16.09 -57.18 -0.92 -13.60 16 16 O -0.95 -13.16 16.13 -57.18 -0.92 -14.09 16 17 C -0.71 -7.93 5.99 -39.45 -0.24 -8.17 16 18 C 0.19 2.08 10.68 -17.55 -0.19 1.89 16 19 N -0.47 -5.28 10.36 -13.20 -0.14 -5.42 16 20 C 0.13 1.26 11.17 -17.47 -0.20 1.06 16 21 C 0.03 0.33 7.35 -39.28 -0.29 0.04 16 22 F -0.12 -1.31 17.28 2.25 0.04 -1.27 16 23 C -0.01 -0.06 9.64 -39.21 -0.38 -0.44 16 24 C 0.12 1.64 6.56 -3.36 -0.02 1.62 16 25 C 0.05 0.85 5.47 -3.46 -0.02 0.83 16 26 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 27 H -0.01 -0.27 8.12 -51.93 -0.42 -0.69 16 28 H 0.03 0.84 7.97 -51.93 -0.41 0.42 16 29 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 1.27 7.99 -51.93 -0.41 0.85 16 31 H 0.09 0.87 7.22 -51.93 -0.37 0.50 16 32 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.18 1.60 7.63 -52.48 -0.40 1.20 16 34 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.17 1.53 7.71 -52.49 -0.40 1.13 16 36 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 0.97 7.21 -51.93 -0.37 0.59 16 38 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 LS Contribution 341.83 15.07 5.15 5.15 Total: -1.00 -32.23 341.83 -9.70 -41.94 By element: Atomic # 1 Polarization: 2.29 SS G_CDS: -4.77 Total: -2.48 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.78 Total: -8.70 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: -0.86 Total: -54.71 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -1.84 Total: -27.69 kcal Atomic # 9 Polarization: -1.31 SS G_CDS: 0.04 Total: -1.27 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Atomic # 16 Polarization: 32.55 SS G_CDS: -0.61 Total: 31.94 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.23 -9.70 -41.94 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601535888.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.157 kcal (2) G-P(sol) polarization free energy of solvation -32.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds