Wall clock time and date at job start Tue Mar 31 2020 07:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53005 * 109.46808 * 2 1 4 4 N 1.46504 * 109.46814 * 180.02562 * 3 2 1 5 5 C 1.36874 * 119.99797 * 270.42797 * 4 3 2 6 6 H 1.08005 * 119.99971 * 128.68694 * 5 4 3 7 7 C 1.39006 * 120.00299 * 308.68659 * 5 4 3 8 8 N 1.31399 * 120.00255 * 170.96118 * 7 5 4 9 9 Si 1.86801 * 120.00172 * 350.96233 * 7 5 4 10 10 H 1.48500 * 109.47148 * 91.17152 * 9 7 5 11 11 H 1.48497 * 109.47420 * 211.17485 * 9 7 5 12 12 H 1.48508 * 109.46730 * 331.17625 * 9 7 5 13 13 C 1.34777 * 119.99963 * 90.43072 * 4 3 2 14 14 O 1.21734 * 120.00109 * 3.21552 * 13 4 3 15 15 C 1.46549 * 119.99736 * 183.21178 * 13 4 3 16 16 C 1.38000 * 126.23592 * 173.03122 * 15 13 4 17 17 C 1.39803 * 107.08163 * 180.02562 * 16 15 13 18 18 S 1.76203 * 126.06279 * 180.02562 * 17 16 15 19 19 O 1.42101 * 106.40089 * 336.45927 * 18 17 16 20 20 O 1.42100 * 106.40267 * 203.53540 * 18 17 16 21 21 N 1.65606 * 107.21650 * 89.99588 * 18 17 16 22 22 C 1.46499 * 119.99679 * 90.00250 * 21 18 17 23 23 C 1.46496 * 119.99894 * 270.00339 * 21 18 17 24 24 C 1.35486 * 107.88071 * 0.26264 * 17 16 15 25 25 N 1.35585 * 108.88243 * 359.57018 * 24 17 16 26 26 H 0.97004 * 125.68808 * 180.16887 * 25 24 17 27 27 H 1.09002 * 109.47004 * 59.99702 * 1 2 3 28 28 H 1.08995 * 109.46927 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46882 * 299.99913 * 1 2 3 30 30 H 1.09000 * 109.47007 * 240.00579 * 2 1 3 31 31 H 1.08997 * 109.47142 * 119.99829 * 2 1 3 32 32 H 1.08996 * 109.47484 * 60.00144 * 3 2 1 33 33 H 1.08997 * 109.47130 * 299.99836 * 3 2 1 34 34 H 0.96999 * 120.00293 * 180.02562 * 8 7 5 35 35 H 1.07997 * 126.45887 * 0.02562 * 16 15 13 36 36 H 1.09003 * 109.46924 * 179.97438 * 22 21 18 37 37 H 1.09001 * 109.47283 * 60.00168 * 22 21 18 38 38 H 1.08991 * 109.47483 * 299.99868 * 22 21 18 39 39 H 1.09000 * 109.46991 * 270.00016 * 23 21 18 40 40 H 1.08995 * 109.47473 * 29.99853 * 23 21 18 41 41 H 1.08998 * 109.47122 * 150.00545 * 23 21 18 42 42 H 1.08000 * 125.56393 * 179.72179 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.1898 1.4335 1.1844 6 1 4.9662 0.7021 1.3539 7 6 3.8861 2.3657 2.1699 8 7 4.4128 2.2503 3.3682 9 14 2.7292 3.7825 1.7907 10 1 1.3366 3.3862 2.1205 11 1 3.1126 4.9655 2.6023 12 1 2.8187 4.1220 0.3477 13 6 4.1784 1.4515 -1.1681 14 8 3.5707 1.5187 -2.2208 15 6 5.6422 1.3804 -1.1702 16 6 6.4507 1.2455 -2.2803 17 6 7.7723 1.2201 -1.8252 18 16 9.2122 1.0641 -2.8287 19 8 8.7959 0.4343 -4.0326 20 8 10.2316 0.5394 -1.9892 21 7 9.6893 2.5950 -3.2428 22 6 10.6291 3.3254 -2.3887 23 6 9.1716 3.2187 -4.4630 24 6 7.7495 1.3314 -0.4751 25 7 6.4613 1.4355 -0.0651 26 1 6.1658 1.5290 0.8541 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6767 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 4.2006 2.9006 4.0559 35 1 6.1241 1.1731 -3.3072 36 1 10.8238 4.3075 -2.8196 37 1 11.5634 2.7687 -2.3173 38 1 10.1997 3.4435 -1.3939 39 1 9.8306 2.9838 -5.2989 40 1 8.1719 2.8370 -4.6702 41 1 9.1272 4.2994 -4.3280 42 1 8.6162 1.3388 0.1693 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000604359879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:39 Heat of formation + Delta-G solvation = -52.141481 kcal Electronic energy + Delta-G solvation = -26913.013193 eV Core-core repulsion = 23021.676821 eV Total energy + Delta-G solvation = -3891.336371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -40.84095 -38.56107 -36.93007 -36.07475 -35.56460 -35.52366 -33.36040 -31.99579 -30.71428 -29.01340 -28.10492 -26.18259 -25.19662 -24.62713 -22.00938 -21.58062 -20.79436 -19.54837 -18.67832 -18.48044 -17.22640 -16.71632 -16.05029 -15.70425 -15.51625 -15.27938 -14.61898 -14.37420 -14.30233 -14.21218 -13.93213 -13.50634 -13.23005 -13.09894 -12.91036 -12.65592 -12.59615 -12.39688 -12.24970 -12.11038 -11.83840 -11.79178 -11.70641 -11.58684 -11.42053 -11.17330 -11.11057 -10.90360 -10.61870 -10.32335 -10.00093 -9.55058 -9.14027 -9.05657 -8.94716 -8.09309 -7.78790 -6.86980 -4.71924 0.73645 2.12676 2.41333 2.84486 2.99753 3.07555 3.32453 3.75851 3.82276 4.07071 4.10949 4.20997 4.57111 4.62784 4.79868 5.28647 5.33563 5.36601 5.43513 5.49765 5.55199 5.65364 5.69473 5.70957 5.75915 5.78203 5.93527 5.93878 6.14292 6.21757 6.23026 6.25698 6.32491 6.57121 6.62262 6.74774 7.01512 7.09970 7.26157 7.59879 7.77679 8.03124 8.54381 8.96691 9.34203 10.18346 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016991 B = 0.003860 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.582736 B = 7251.530441 C = 7916.242472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.132 4.132 3 C 0.103 3.897 4 N -0.468 5.468 5 C -0.372 4.372 6 H 0.102 0.898 7 C 0.075 3.925 8 N -0.854 5.854 9 Si 0.889 3.111 10 H -0.267 1.267 11 H -0.284 1.284 12 H -0.257 1.257 13 C 0.558 3.442 14 O -0.577 6.577 15 C -0.007 4.007 16 C -0.060 4.060 17 C -0.763 4.763 18 S 2.724 3.276 19 O -0.963 6.963 20 O -0.969 6.969 21 N -1.010 6.010 22 C 0.092 3.908 23 C 0.095 3.905 24 C 0.111 3.889 25 N -0.495 5.495 26 H 0.444 0.556 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.283 0.717 35 H 0.152 0.848 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.055 0.945 40 H 0.075 0.925 41 H 0.069 0.931 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.219 3.565 -5.822 9.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.170 4.170 3 C -0.020 4.020 4 N -0.189 5.189 5 C -0.499 4.499 6 H 0.119 0.881 7 C -0.136 4.136 8 N -0.486 5.486 9 Si 0.715 3.285 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.181 1.181 13 C 0.348 3.652 14 O -0.460 6.460 15 C -0.122 4.122 16 C -0.086 4.086 17 C -0.859 4.859 18 S 2.816 3.184 19 O -0.954 6.954 20 O -0.960 6.960 21 N -0.849 5.849 22 C -0.053 4.053 23 C -0.050 4.050 24 C -0.036 4.036 25 N -0.098 5.098 26 H 0.298 0.702 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.087 0.913 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.169 0.831 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 6.165 2.976 -6.155 9.206 hybrid contribution -1.239 1.151 1.093 2.014 sum 4.926 4.127 -5.061 8.180 Atomic orbital electron populations 1.21707 0.96141 1.01225 1.01452 1.21777 0.95002 0.97735 1.02532 1.21687 0.82147 0.96826 1.01302 1.43501 1.04252 1.66056 1.05109 1.18916 1.21747 1.17056 0.92202 0.88149 1.25604 0.96253 0.97204 0.94587 1.69650 1.41515 1.35445 1.02034 0.86645 0.80621 0.81142 0.80044 1.19345 1.21043 1.18117 1.17345 0.84717 0.78985 0.84143 1.90711 1.68644 1.54977 1.31663 1.20674 0.91391 1.13535 0.86555 1.20709 0.89028 1.00826 0.98017 1.30627 1.16726 1.31570 1.06969 1.00793 0.72898 0.71657 0.73095 1.93540 1.83612 1.72601 1.45604 1.93524 1.56557 1.76563 1.69325 1.57420 1.57880 1.36352 1.33202 1.21495 0.92461 0.97392 0.93966 1.21490 0.99428 0.98822 0.85299 1.21837 0.88712 0.99273 0.93794 1.44306 1.05102 1.48446 1.11974 0.70153 0.92897 0.92910 0.92980 0.91993 0.91323 0.91710 0.91022 0.90662 0.83054 0.90490 0.91642 0.92195 0.92603 0.90670 0.91181 0.80512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 50. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.91 37.16 0.37 -1.80 16 2 C -0.13 -2.40 6.26 -26.73 -0.17 -2.57 16 3 C 0.10 2.14 4.16 -4.04 -0.02 2.12 16 4 N -0.47 -10.64 1.97 -116.34 -0.23 -10.87 16 5 C -0.37 -8.63 7.17 -15.02 -0.11 -8.73 16 6 H 0.10 2.40 6.14 -52.48 -0.32 2.08 16 7 C 0.07 1.75 5.43 -17.45 -0.09 1.65 16 8 N -0.85 -20.67 13.96 55.50 0.77 -19.89 16 9 Si 0.89 18.99 24.99 -169.99 -4.25 14.74 16 10 H -0.27 -5.51 6.76 56.52 0.38 -5.12 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 13 C 0.56 13.00 7.60 -12.91 -0.10 12.90 16 14 O -0.58 -14.31 16.44 5.16 0.08 -14.22 16 15 C -0.01 -0.14 6.77 -81.98 -0.55 -0.70 16 16 C -0.06 -1.16 10.45 -39.08 -0.41 -1.57 16 17 C -0.76 -12.89 6.18 -39.98 -0.25 -13.14 16 18 S 2.72 41.32 5.80 -107.50 -0.62 40.70 16 19 O -0.96 -17.03 16.94 -57.17 -0.97 -18.00 16 20 O -0.97 -16.11 17.01 -57.17 -0.97 -17.08 16 21 N -1.01 -11.95 3.58 -129.21 -0.46 -12.42 16 22 C 0.09 0.86 10.30 59.85 0.62 1.48 16 23 C 0.10 0.95 10.26 59.84 0.61 1.57 16 24 C 0.11 1.83 11.63 -16.88 -0.20 1.63 16 25 N -0.49 -9.45 5.35 -9.37 -0.05 -9.50 16 26 H 0.44 8.75 5.10 -40.82 -0.21 8.54 16 27 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.34 4.06 -51.93 -0.21 1.13 16 33 H 0.07 1.49 7.36 -51.93 -0.38 1.11 16 34 H 0.28 6.45 8.31 -40.82 -0.34 6.12 16 35 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 36 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 37 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 38 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.80 7.79 -51.93 -0.40 0.40 16 41 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 42 H 0.18 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 358.73 15.07 5.41 5.41 Total: -1.00 -30.36 358.73 -7.30 -37.66 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -5.72 Total: 10.64 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -0.29 Total: -7.17 kcal Atomic # 7 Polarization: -52.70 SS G_CDS: 0.03 Total: -52.67 kcal Atomic # 8 Polarization: -47.45 SS G_CDS: -1.86 Total: -49.30 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -4.25 Total: 14.74 kcal Atomic # 16 Polarization: 41.32 SS G_CDS: -0.62 Total: 40.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.36 -7.30 -37.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000604359879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.483 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.69 seconds