Wall clock time and date at job start Tue Mar 31 2020 07:06:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47326 * 2 1 4 4 N 1.46499 * 109.47106 * 119.99765 * 2 1 3 5 5 C 1.46496 * 120.00290 * 300.00115 * 4 2 1 6 6 C 1.50701 * 109.47044 * 275.00020 * 5 4 2 7 7 H 1.07992 * 120.00190 * 0.02562 * 6 5 4 8 8 C 1.37881 * 119.99555 * 179.97438 * 6 5 4 9 9 N 1.31510 * 120.00328 * 0.02562 * 8 6 5 10 10 Si 1.86804 * 119.99565 * 179.97438 * 8 6 5 11 11 H 1.48499 * 109.46856 * 90.00458 * 10 8 6 12 12 H 1.48496 * 109.47186 * 210.00068 * 10 8 6 13 13 H 1.48497 * 109.47273 * 330.00480 * 10 8 6 14 14 S 1.65603 * 119.99825 * 119.99985 * 4 2 1 15 15 O 1.42100 * 106.40355 * 336.46206 * 14 4 2 16 16 O 1.42102 * 106.39964 * 203.53859 * 14 4 2 17 17 C 1.76200 * 107.21617 * 90.00442 * 14 4 2 18 18 C 1.39832 * 126.07208 * 90.02642 * 17 14 4 19 19 C 1.37877 * 107.08762 * 179.71892 * 18 17 14 20 20 C 1.46680 * 126.23138 * 180.23677 * 19 18 17 21 21 N 1.34770 * 120.00042 * 354.26002 * 20 19 18 22 22 O 1.21696 * 119.99800 * 174.25948 * 20 19 18 23 23 N 1.37648 * 107.53187 * 0.24123 * 19 18 17 24 24 C 1.46496 * 125.67690 * 179.97438 * 23 19 18 25 25 C 1.35457 * 126.06579 * 270.16010 * 17 14 4 26 26 H 1.08996 * 109.47574 * 300.00260 * 1 2 3 27 27 H 1.09007 * 109.47059 * 60.00451 * 1 2 3 28 28 H 1.09001 * 109.47317 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.47625 * 240.00079 * 2 1 3 30 30 H 1.08998 * 109.47874 * 180.02562 * 3 2 1 31 31 H 1.09012 * 109.47026 * 300.00092 * 3 2 1 32 32 H 1.08996 * 109.47006 * 59.99392 * 3 2 1 33 33 H 1.09001 * 109.46728 * 34.99769 * 5 4 2 34 34 H 1.08999 * 109.47553 * 154.99793 * 5 4 2 35 35 H 0.97005 * 119.99809 * 179.97438 * 9 8 6 36 36 H 1.07998 * 126.45856 * 359.97359 * 18 17 14 37 37 H 0.96998 * 120.00309 * 5.03989 * 21 20 19 38 38 H 0.97001 * 120.00145 * 185.03593 * 21 20 19 39 39 H 1.08999 * 109.47022 * 93.87543 * 24 23 19 40 40 H 1.08998 * 109.47397 * 213.87246 * 24 23 19 41 41 H 1.09005 * 109.47530 * 333.87615 * 24 23 19 42 42 H 1.08001 * 125.56491 * 0.03211 * 25 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6644 -0.1901 2.5267 6 6 2.6338 0.8906 2.9311 7 1 3.4332 1.1763 2.2637 8 6 2.4993 1.5152 4.1530 9 7 1.5255 1.1677 4.9656 10 14 3.7014 2.8543 4.6546 11 1 3.1896 4.1732 4.2033 12 1 3.8481 2.8596 6.1322 13 1 5.0219 2.5946 4.0269 14 16 2.9704 -2.0370 1.0442 15 8 2.6903 -2.5840 -0.2370 16 8 2.8227 -2.7711 2.2520 17 6 4.6444 -1.4893 0.9965 18 6 5.4866 -1.3186 2.0996 19 6 6.7035 -0.8857 1.6171 20 6 7.8946 -0.5812 2.4170 21 7 7.8270 -0.6059 3.7628 22 8 8.9440 -0.3062 1.8655 23 7 6.5968 -0.7912 0.2480 24 6 7.6610 -0.3660 -0.6646 25 6 5.3431 -1.1565 -0.1152 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8901 32 1 1.6766 1.9563 0.8899 33 1 0.6539 0.2180 2.5044 34 1 1.7104 -1.0073 3.2465 35 1 1.4312 1.6069 5.8254 36 1 5.2331 -1.4967 3.1342 37 1 7.0122 -0.8957 4.2022 38 1 8.5931 -0.3340 4.2920 39 1 8.1925 -1.2421 -1.0362 40 1 7.2251 0.1773 -1.5030 41 1 8.3573 0.2832 -0.1336 42 1 4.9645 -1.1823 -1.1263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609158271.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:06:07 Heat of formation + Delta-G solvation = -67.407184 kcal Electronic energy + Delta-G solvation = -27819.875028 eV Core-core repulsion = 23927.876686 eV Total energy + Delta-G solvation = -3891.998342 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.124 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.36462 -38.76531 -36.87242 -36.48012 -35.11804 -34.05284 -32.80424 -32.67157 -30.57780 -29.34208 -26.96496 -26.70628 -26.48489 -23.23199 -22.77442 -21.38459 -20.22950 -19.70054 -18.49963 -17.67712 -16.93469 -16.70698 -16.46933 -15.92119 -15.64972 -15.34022 -15.04447 -14.47949 -14.25487 -14.09897 -13.76493 -13.53188 -13.37137 -13.08469 -12.60663 -12.46654 -12.33657 -12.32337 -12.06502 -11.72179 -11.46477 -11.40870 -11.14982 -11.06142 -10.92556 -10.78313 -10.69511 -10.47791 -10.29213 -10.13730 -9.87736 -9.76282 -9.55647 -9.01301 -8.46654 -8.31863 -7.98236 -6.08710 -4.12343 1.22130 1.48112 2.26827 2.64479 3.22444 3.31067 3.32981 3.36711 3.64360 3.85827 4.37159 4.50661 4.68684 4.84861 4.87604 5.07229 5.13401 5.25105 5.39338 5.46117 5.51731 5.66525 5.72148 5.76025 6.02167 6.14455 6.19049 6.33490 6.49496 6.52560 6.60722 6.76756 6.80393 6.85603 7.10545 7.13394 7.30528 7.43196 7.50547 7.72936 7.89773 8.18977 8.20526 8.92603 9.51782 10.99290 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.009505 B = 0.006953 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2945.112158 B = 4025.876843 C = 5683.352420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.151 3.849 3 C -0.157 4.157 4 N -0.978 5.978 5 C 0.243 3.757 6 C -0.528 4.528 7 H 0.065 0.935 8 C 0.064 3.936 9 N -0.890 5.890 10 Si 0.885 3.115 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.274 1.274 14 S 2.714 3.286 15 O -0.987 6.987 16 O -0.961 6.961 17 C -0.734 4.734 18 C -0.020 4.020 19 C -0.077 4.077 20 C 0.602 3.398 21 N -0.840 5.840 22 O -0.562 6.562 23 N -0.404 5.404 24 C 0.062 3.938 25 C 0.132 3.868 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.084 0.916 33 H 0.043 0.957 34 H 0.052 0.948 35 H 0.263 0.737 36 H 0.161 0.839 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.105 0.895 42 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -2.034 -8.685 11.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.044 3.956 3 C -0.215 4.215 4 N -0.817 5.817 5 C 0.122 3.878 6 C -0.568 4.568 7 H 0.083 0.917 8 C -0.138 4.138 9 N -0.529 5.529 10 Si 0.714 3.286 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.199 1.199 14 S 2.804 3.196 15 O -0.977 6.977 16 O -0.951 6.951 17 C -0.826 4.826 18 C -0.046 4.046 19 C -0.188 4.188 20 C 0.389 3.611 21 N -0.404 5.404 22 O -0.443 6.443 23 N -0.076 5.076 24 C -0.079 4.079 25 C -0.011 4.011 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.061 0.939 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.178 0.822 37 H 0.239 0.761 38 H 0.239 0.761 39 H 0.097 0.903 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 7.552 -2.571 -9.226 12.197 hybrid contribution 1.152 1.525 0.871 2.101 sum 8.704 -1.046 -8.355 12.110 Atomic orbital electron populations 1.22093 0.95510 1.01808 1.02136 1.20627 0.94495 0.93773 0.86732 1.22202 1.00902 0.96209 1.02236 1.57471 1.63233 1.47252 1.13764 1.19212 0.97128 0.95477 0.76023 1.21613 1.13699 1.19672 1.01777 0.91717 1.24902 0.95480 0.97006 0.96424 1.69929 1.31131 1.42027 1.09825 0.86706 0.81738 0.82514 0.77688 1.20829 1.21267 1.19931 1.01046 0.72588 0.73296 0.72704 1.93483 1.84602 1.77082 1.42566 1.93530 1.85752 1.69221 1.46581 1.31315 1.26093 1.26676 0.98558 1.21014 0.89552 0.95537 0.98505 1.20016 0.97113 1.18141 0.83514 1.16867 0.86013 0.75730 0.82469 1.43460 1.20477 1.70184 1.06244 1.90784 1.30858 1.50917 1.71696 1.44037 1.10758 1.47040 1.05733 1.22356 0.90059 1.02056 0.93432 1.21762 0.83261 0.96976 0.99099 0.91296 0.92532 0.92837 0.90171 0.93139 0.93748 0.89692 0.93930 0.92998 0.92754 0.82170 0.76069 0.76097 0.90336 0.89690 0.87665 0.79964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.16 37.16 0.34 -2.06 16 2 C 0.15 2.50 3.24 -67.93 -0.22 2.28 16 3 C -0.16 -2.54 8.20 37.16 0.30 -2.23 16 4 N -0.98 -19.06 2.73 -108.58 -0.30 -19.36 16 5 C 0.24 5.64 5.01 -5.20 -0.03 5.61 16 6 C -0.53 -12.88 7.53 -34.44 -0.26 -13.13 16 7 H 0.06 1.55 7.07 -52.49 -0.37 1.18 16 8 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -24.29 13.29 55.43 0.74 -23.56 16 10 Si 0.89 20.04 29.54 -169.99 -5.02 15.01 16 11 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 S 2.71 52.18 5.83 -107.50 -0.63 51.55 16 15 O -0.99 -19.08 16.41 -57.17 -0.94 -20.02 16 16 O -0.96 -21.38 16.42 -57.17 -0.94 -22.32 16 17 C -0.73 -12.72 6.17 -39.98 -0.25 -12.97 16 18 C -0.02 -0.35 10.15 -39.12 -0.40 -0.75 16 19 C -0.08 -1.23 6.88 -81.98 -0.56 -1.80 16 20 C 0.60 9.22 8.04 -12.86 -0.10 9.12 16 21 N -0.84 -10.00 8.86 30.26 0.27 -9.74 16 22 O -0.56 -9.59 15.50 5.19 0.08 -9.50 16 23 N -0.40 -5.83 3.16 -120.23 -0.38 -6.21 16 24 C 0.06 0.67 10.63 59.84 0.64 1.31 16 25 C 0.13 1.93 11.13 -16.91 -0.19 1.74 16 26 H 0.07 1.15 6.69 -51.93 -0.35 0.80 16 27 H 0.06 0.71 8.14 -51.92 -0.42 0.29 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.08 1.21 6.91 -51.93 -0.36 0.85 16 30 H 0.05 0.82 7.93 -51.93 -0.41 0.41 16 31 H 0.04 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.08 1.60 6.65 -51.93 -0.35 1.25 16 33 H 0.04 1.03 6.45 -51.93 -0.33 0.69 16 34 H 0.05 1.33 6.91 -51.93 -0.36 0.97 16 35 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 36 H 0.16 2.61 7.45 -52.49 -0.39 2.22 16 37 H 0.41 4.39 7.73 -40.82 -0.32 4.08 16 38 H 0.41 3.92 8.93 -40.82 -0.36 3.56 16 39 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.29 6.23 -51.93 -0.32 0.96 16 42 H 0.18 2.06 8.06 -52.49 -0.42 1.63 16 LS Contribution 360.72 15.07 5.44 5.44 Total: -1.00 -33.23 360.72 -8.10 -41.33 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -5.60 Total: 8.69 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -0.82 Total: -11.32 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.33 Total: -58.86 kcal Atomic # 8 Polarization: -50.04 SS G_CDS: -1.80 Total: -51.83 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 16 Polarization: 52.18 SS G_CDS: -0.63 Total: 51.55 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.23 -8.10 -41.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609158271.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.078 kcal (2) G-P(sol) polarization free energy of solvation -33.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds