Wall clock time and date at job start Tue Mar 31 2020 05:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 120.00021 * 2 1 4 4 H 1.48496 * 109.47125 * 359.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 119.99726 * 3 2 1 6 6 H 1.48498 * 109.47140 * 239.99937 * 3 2 1 7 7 C 1.37876 * 119.99917 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00434 * 14.36804 * 7 2 1 9 9 C 1.50705 * 119.99899 * 194.36987 * 7 2 1 10 10 O 1.42897 * 112.94366 * 65.59876 * 9 7 2 11 11 C 1.53943 * 113.74171 * 294.00684 * 9 7 2 12 12 N 1.47814 * 86.03489 * 222.08674 * 11 9 7 13 13 C 1.34777 * 134.45384 * 204.64341 * 12 11 9 14 14 O 1.21280 * 120.00298 * 179.86512 * 13 12 11 15 15 C 1.50703 * 119.99919 * 359.86683 * 13 12 11 16 16 N 1.46498 * 109.47026 * 179.97438 * 15 13 12 17 17 C 1.35862 * 119.69709 * 89.99948 * 16 15 13 18 18 N 1.29835 * 123.36626 * 179.97438 * 17 16 15 19 19 C 1.35646 * 121.61847 * 0.02686 * 18 17 16 20 20 C 1.39649 * 121.64757 * 180.02562 * 19 18 17 21 21 C 1.37657 * 119.68611 * 179.97438 * 20 19 18 22 22 C 1.38885 * 120.82346 * 0.02562 * 21 20 19 23 23 C 1.37766 * 120.56684 * 359.95426 * 22 21 20 24 24 C 1.39338 * 119.51740 * 0.04595 * 23 22 21 25 25 C 1.35345 * 119.70306 * 269.72990 * 16 15 13 26 26 O 1.21723 * 121.29078 * 359.97438 * 25 16 15 27 27 C 1.47572 * 91.05445 * 24.54975 * 12 11 9 28 28 H 0.96994 * 119.99617 * 174.86300 * 1 2 3 29 29 H 0.96694 * 114.00247 * 305.73617 * 10 9 7 30 30 H 1.09002 * 113.76658 * 336.34670 * 11 9 7 31 31 H 1.09000 * 113.77133 * 107.74672 * 11 9 7 32 32 H 1.08993 * 109.47404 * 299.99491 * 15 13 12 33 33 H 1.09003 * 109.47463 * 59.99869 * 15 13 12 34 34 H 1.08004 * 118.31488 * 0.02562 * 17 16 15 35 35 H 1.08003 * 120.15529 * 359.95355 * 20 19 18 36 36 H 1.08006 * 119.58767 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.71696 * 179.97438 * 22 21 20 38 38 H 1.07999 * 120.23857 * 180.02562 * 23 22 21 39 39 H 1.09001 * 113.77187 * 221.15624 * 27 12 11 40 40 H 1.08998 * 113.77370 * 89.75206 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.4899 -2.1148 -0.2311 9 6 3.4762 -1.2143 0.3245 10 8 3.7553 -0.8306 1.6724 11 6 4.3504 -0.4946 -0.7185 12 7 5.2851 -1.6296 -0.5674 13 6 6.6081 -1.7956 -0.7643 14 8 7.1228 -2.8725 -0.5496 15 6 7.4478 -0.6428 -1.2513 16 7 8.8412 -1.0754 -1.3838 17 6 9.2752 -1.5958 -2.5614 18 7 10.4932 -2.0006 -2.7574 19 6 11.4319 -1.9303 -1.7807 20 6 12.7422 -2.3650 -1.9910 21 6 13.6625 -2.2744 -0.9713 22 6 13.3045 -1.7559 0.2664 23 6 12.0182 -1.3202 0.4981 24 6 11.0714 -1.4032 -0.5208 25 6 9.6857 -0.9480 -0.3339 26 8 9.3116 -0.4786 0.7250 27 6 4.1892 -2.5070 -0.1123 28 1 -0.4849 -0.8367 -0.0752 29 1 3.3824 0.0258 1.9227 30 1 3.8932 -0.4306 -1.7059 31 1 4.7535 0.4571 -0.3724 32 1 7.0775 -0.3073 -2.2199 33 1 7.3889 0.1774 -0.5358 34 1 8.5712 -1.6761 -3.3765 35 1 13.0320 -2.7707 -2.9490 36 1 14.6753 -2.6115 -1.1356 37 1 14.0408 -1.6935 1.0540 38 1 11.7458 -0.9176 1.4624 39 1 4.4638 -3.1589 0.7170 40 1 3.6846 -3.0352 -0.9212 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000616027686.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:46 Heat of formation + Delta-G solvation = -12.788159 kcal Electronic energy + Delta-G solvation = -27498.250520 eV Core-core repulsion = 23473.176686 eV Total energy + Delta-G solvation = -4025.073835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 329.121 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.82732 -39.92440 -38.77040 -37.81481 -37.37499 -34.43911 -34.33276 -32.70493 -31.64344 -30.28108 -29.85694 -27.82556 -25.85727 -25.03275 -24.91914 -23.79836 -22.13866 -20.35030 -19.15633 -19.09895 -18.74832 -18.06770 -17.45151 -17.18004 -16.07489 -15.80623 -15.56051 -15.35581 -15.29764 -15.17439 -14.65919 -14.21487 -14.12237 -14.05244 -13.67263 -13.44652 -13.29717 -12.88920 -12.54557 -12.44316 -12.23311 -12.18328 -12.05038 -11.95329 -11.35760 -10.88821 -10.57347 -10.51449 -10.39842 -10.18804 -10.06208 -9.62229 -9.53705 -9.37807 -9.11385 -8.62015 -8.27532 -8.17200 -6.80940 -4.55245 0.32392 0.61060 2.01870 2.09421 2.58601 2.74114 3.02342 3.07505 3.12402 3.32418 3.78286 3.80886 4.03614 4.10635 4.42083 4.44925 4.53693 4.64170 4.73851 4.77298 4.95355 5.04877 5.07786 5.10903 5.25531 5.37239 5.64919 5.75768 5.80076 5.84679 5.86297 6.04792 6.07355 6.11882 6.19957 6.23690 6.36370 6.53461 6.59213 7.45972 7.52766 7.64742 7.99780 8.04064 8.29027 8.49291 8.63130 9.20709 10.55532 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.027947 B = 0.002815 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1001.653622 B = 9944.652834 C =10096.089037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.035 3.965 3 Si 1.039 2.961 4 H -0.277 1.277 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.618 4.618 8 H 0.071 0.929 9 C 0.201 3.799 10 O -0.565 6.565 11 C 0.052 3.948 12 N -0.627 5.627 13 C 0.517 3.483 14 O -0.548 6.548 15 C 0.078 3.922 16 N -0.529 5.529 17 C 0.392 3.608 18 N -0.529 5.529 19 C 0.155 3.845 20 C -0.113 4.113 21 C -0.076 4.076 22 C -0.143 4.143 23 C -0.040 4.040 24 C -0.192 4.192 25 C 0.551 3.449 26 O -0.503 6.503 27 C 0.132 3.868 28 H 0.275 0.725 29 H 0.368 0.632 30 H 0.100 0.900 31 H 0.068 0.932 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.200 0.800 35 H 0.139 0.861 36 H 0.133 0.867 37 H 0.132 0.868 38 H 0.137 0.863 39 H 0.074 0.926 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.330 1.064 -6.589 22.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.173 4.173 3 Si 0.867 3.133 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.199 1.199 7 C -0.656 4.656 8 H 0.089 0.911 9 C 0.159 3.841 10 O -0.373 6.373 11 C -0.071 4.071 12 N -0.361 5.361 13 C 0.304 3.696 14 O -0.426 6.426 15 C -0.048 4.048 16 N -0.251 5.251 17 C 0.104 3.896 18 N -0.249 5.249 19 C 0.046 3.954 20 C -0.133 4.133 21 C -0.095 4.095 22 C -0.161 4.161 23 C -0.060 4.060 24 C -0.198 4.198 25 C 0.345 3.655 26 O -0.376 6.376 27 C 0.010 3.990 28 H 0.085 0.915 29 H 0.217 0.783 30 H 0.118 0.882 31 H 0.086 0.914 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.216 0.784 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.150 0.850 38 H 0.155 0.845 39 H 0.093 0.907 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 22.091 1.498 -6.411 23.051 hybrid contribution -0.520 -0.869 0.547 1.151 sum 21.571 0.630 -5.863 22.363 Atomic orbital electron populations 1.70803 1.06808 1.31545 1.42505 1.25847 0.96371 1.02410 0.92661 0.84150 0.75548 0.76301 0.77303 1.20282 1.20575 1.19868 1.22171 0.92411 0.96811 1.54165 0.91124 1.20385 0.93534 0.90296 0.79836 1.86396 1.79407 1.41680 1.29831 1.24850 0.88724 0.90307 1.03210 1.50127 1.04716 1.16829 1.64441 1.20161 0.81690 0.89202 0.78586 1.90714 1.71572 1.27475 1.52875 1.21755 0.79000 0.98076 1.05940 1.46218 1.11474 1.54300 1.13096 1.24742 0.93028 0.84807 0.86975 1.68663 1.00223 1.24359 1.31638 1.18840 0.93849 0.94508 0.88166 1.20838 0.90615 1.01495 1.00320 1.21281 0.99522 0.96134 0.92581 1.21169 0.96164 1.01030 0.97785 1.21041 0.91940 0.94900 0.98071 1.20561 0.93785 1.08524 0.96926 1.18415 0.85540 0.78525 0.83066 1.90885 1.78056 1.43807 1.24891 1.23276 0.82502 0.95200 0.98015 0.91467 0.78251 0.88158 0.91360 0.85652 0.85463 0.78360 0.84352 0.84946 0.85010 0.84490 0.90730 0.88741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.23 13.70 55.43 0.76 -23.47 16 2 C 0.04 0.89 5.44 -17.82 -0.10 0.79 16 3 Si 1.04 20.95 24.55 -169.99 -4.17 16.78 16 4 H -0.28 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.14 5.81 56.52 0.33 -4.81 16 6 H -0.27 -4.82 6.48 56.52 0.37 -4.45 16 7 C -0.62 -15.25 9.04 -34.44 -0.31 -15.56 16 8 H 0.07 1.89 8.06 -52.49 -0.42 1.46 16 9 C 0.20 4.35 1.07 -90.84 -0.10 4.25 16 10 O -0.56 -12.80 13.47 -35.23 -0.47 -13.27 16 11 C 0.05 0.94 5.39 -2.84 -0.02 0.92 16 12 N -0.63 -11.67 3.61 -178.12 -0.64 -12.31 16 13 C 0.52 9.25 8.12 -10.98 -0.09 9.16 16 14 O -0.55 -11.76 17.16 5.56 0.10 -11.66 16 15 C 0.08 1.03 5.60 -5.19 -0.03 1.00 16 16 N -0.53 -7.30 2.09 -120.15 -0.25 -7.55 16 17 C 0.39 4.47 11.41 -90.17 -1.03 3.44 16 18 N -0.53 -6.67 10.37 -12.01 -0.12 -6.79 16 19 C 0.16 2.02 6.63 -84.51 -0.56 1.46 16 20 C -0.11 -1.15 10.03 -39.27 -0.39 -1.55 16 21 C -0.08 -0.63 10.00 -39.55 -0.40 -1.03 16 22 C -0.14 -1.29 10.02 -39.51 -0.40 -1.69 16 23 C -0.04 -0.48 9.68 -39.34 -0.38 -0.86 16 24 C -0.19 -2.73 5.89 -104.78 -0.62 -3.35 16 25 C 0.55 8.93 7.66 -12.43 -0.10 8.83 16 26 O -0.50 -9.52 16.32 5.17 0.08 -9.44 16 27 C 0.13 2.65 8.23 -2.97 -0.02 2.63 16 28 H 0.27 7.54 8.73 -40.82 -0.36 7.19 16 29 H 0.37 7.68 6.06 45.56 0.28 7.95 16 30 H 0.10 1.70 7.97 -51.93 -0.41 1.28 16 31 H 0.07 1.13 6.87 -51.93 -0.36 0.77 16 32 H 0.13 1.05 7.99 -51.93 -0.42 0.64 16 33 H 0.13 1.70 7.45 -51.93 -0.39 1.32 16 34 H 0.20 1.40 7.99 -52.48 -0.42 0.98 16 35 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 36 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.14 1.60 7.83 -52.49 -0.41 1.19 16 39 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 40 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 LS Contribution 344.23 15.07 5.19 5.19 Total: -1.00 -34.13 344.23 -7.99 -42.12 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.92 Total: 11.96 kcal Atomic # 6 Polarization: 12.98 SS G_CDS: -4.53 Total: 8.45 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.26 Total: -50.12 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -0.29 Total: -34.37 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.17 Total: 16.78 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -34.13 -7.99 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000616027686.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.331 kcal (2) G-P(sol) polarization free energy of solvation -34.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds