Wall clock time and date at job start Tue Mar 31 2020 05:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 114.00081 * 2 1 4 4 C 1.52997 * 109.46944 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.46877 * 65.00699 * 4 3 2 6 6 C 1.42903 * 113.99561 * 179.97438 * 5 4 3 7 7 C 1.53008 * 109.46680 * 179.97438 * 6 5 4 8 8 N 1.46500 * 109.47488 * 64.99711 * 7 6 5 9 9 S 1.65599 * 120.00214 * 164.99885 * 8 7 6 10 10 O 1.42099 * 106.39938 * 311.46446 * 9 8 7 11 11 O 1.42092 * 106.40136 * 178.53974 * 9 8 7 12 12 C 1.76199 * 107.21588 * 64.99779 * 9 8 7 13 13 C 1.38649 * 119.87924 * 270.25539 * 12 9 8 14 14 C 1.38617 * 120.50384 * 180.30415 * 13 12 9 15 15 C 1.37641 * 120.24556 * 359.44340 * 14 13 12 16 16 C 1.40700 * 119.74456 * 0.27362 * 15 14 13 17 17 C 1.41393 * 120.24808 * 179.97438 * 16 15 14 18 18 H 1.07994 * 120.00329 * 204.39358 * 17 16 15 19 19 C 1.39942 * 119.99793 * 24.38823 * 17 16 15 20 20 N 1.30830 * 119.99921 * 17.86190 * 19 17 16 21 21 Si 1.86807 * 120.00314 * 197.85679 * 19 17 16 22 22 H 1.48504 * 109.46564 * 60.00381 * 21 19 17 23 23 H 1.48498 * 109.47182 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.46916 * 300.00498 * 21 19 17 25 25 C 1.37604 * 119.87027 * 90.00133 * 12 9 8 26 26 H 1.08995 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47237 * 299.99731 * 1 2 3 28 28 H 1.09000 * 109.47432 * 59.98984 * 1 2 3 29 29 H 1.09006 * 109.46592 * 60.00515 * 3 2 1 30 30 H 1.08994 * 109.47219 * 300.00771 * 3 2 1 31 31 H 1.08991 * 109.47409 * 305.00264 * 4 3 2 32 32 H 1.09002 * 109.46885 * 185.00253 * 4 3 2 33 33 H 1.08993 * 109.47547 * 59.99956 * 6 5 4 34 34 H 1.09003 * 109.46943 * 299.99197 * 6 5 4 35 35 H 1.08994 * 109.46890 * 304.99694 * 7 6 5 36 36 H 1.09001 * 109.46706 * 185.00161 * 7 6 5 37 37 H 0.96998 * 119.99788 * 345.00004 * 8 7 6 38 38 H 1.08005 * 119.75337 * 0.03997 * 13 12 9 39 39 H 1.07992 * 119.88323 * 179.71839 * 14 13 12 40 40 H 1.07998 * 120.13267 * 180.25377 * 15 14 13 41 41 H 0.97008 * 119.99884 * 179.97438 * 20 19 17 42 42 H 1.07994 * 120.13007 * 0.02562 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9648 0.5797 -1.2221 6 6 5.3811 0.4202 -1.3252 7 6 5.7244 -0.2340 -2.6650 8 7 5.3554 0.6689 -3.7582 9 16 5.9380 0.4018 -5.2851 10 8 7.3373 0.1943 -5.1501 11 8 5.3784 1.4139 -6.1107 12 6 5.2600 -1.1261 -5.8422 13 6 5.9338 -2.3122 -5.5938 14 6 5.4154 -3.5209 -6.0316 15 6 4.2177 -3.5570 -6.7090 16 6 3.5223 -2.3602 -6.9616 17 6 2.2914 -2.3848 -7.6570 18 1 1.9548 -1.5081 -8.1902 19 6 1.5094 -3.5454 -7.6544 20 7 1.7163 -4.4715 -6.7538 21 14 0.1701 -3.7722 -8.9367 22 1 0.7745 -3.7499 -10.2929 23 1 -0.5090 -5.0746 -8.7181 24 1 -0.8202 -2.6719 -8.8179 25 6 4.0611 -1.1383 -6.5174 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5140 -0.8899 29 1 1.6886 1.8463 0.8901 30 1 1.6886 1.8464 -0.8899 31 1 3.8514 0.5681 0.8408 32 1 3.9785 2.1764 0.0890 33 1 5.7358 -0.2119 -0.5112 34 1 5.8621 1.3964 -1.2633 35 1 5.1734 -1.1691 -2.7645 36 1 6.7946 -0.4368 -2.7067 37 1 4.7699 1.4231 -3.5875 38 1 6.8719 -2.2938 -5.0589 39 1 5.9508 -4.4382 -5.8367 40 1 3.8135 -4.5001 -7.0457 41 1 1.1740 -5.2759 -6.7517 42 1 3.5361 -0.2137 -6.7066 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619478795.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:44 Heat of formation + Delta-G solvation = -152.053137 kcal Electronic energy + Delta-G solvation = -25921.028663 eV Core-core repulsion = 21993.067045 eV Total energy + Delta-G solvation = -3927.961617 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -38.65790 -37.58753 -37.46164 -36.60636 -35.25582 -34.83935 -33.79797 -30.65582 -30.02665 -29.73233 -28.23217 -26.33309 -25.44204 -22.71977 -22.55686 -21.82373 -20.92626 -19.07896 -17.96112 -17.15009 -17.04123 -16.87336 -16.20891 -15.88053 -15.50932 -15.43338 -15.17669 -14.98221 -14.70455 -14.25915 -13.83684 -13.41777 -13.30861 -13.15753 -12.58134 -12.53171 -12.44584 -11.88136 -11.82810 -11.59836 -11.56031 -11.48155 -11.35236 -11.31926 -11.17581 -11.02947 -10.96545 -10.83359 -10.59323 -9.82967 -9.76144 -9.72486 -9.61135 -9.30253 -9.07683 -7.98178 -7.65274 -6.88168 -4.48674 1.10342 2.25579 2.68948 3.01957 3.04498 3.11855 3.45620 3.62491 3.68202 3.86203 4.30061 4.48634 4.75278 4.90278 4.96120 5.01994 5.10550 5.17835 5.19424 5.24658 5.28740 5.33609 5.45849 5.53348 5.60720 5.63313 5.88699 6.07890 6.15201 6.22594 6.70928 6.81305 6.90455 6.97299 7.07711 7.11420 7.26250 7.33235 7.43995 7.77686 7.85722 7.99504 8.44969 8.71630 8.76866 10.07284 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.008444 B = 0.004227 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3315.176307 B = 6623.195654 C = 8918.717178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.381 6.381 3 C 0.061 3.939 4 C 0.063 3.937 5 O -0.373 6.373 6 C 0.056 3.944 7 C 0.123 3.877 8 N -1.117 6.117 9 S 2.691 3.309 10 O -0.978 6.978 11 O -0.974 6.974 12 C -0.631 4.631 13 C -0.150 4.150 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.082 0.918 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.912 3.088 22 H -0.262 1.262 23 H -0.278 1.278 24 H -0.264 1.264 25 C -0.121 4.121 26 H 0.087 0.913 27 H 0.037 0.963 28 H 0.043 0.957 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.056 0.944 35 H 0.079 0.921 36 H 0.092 0.908 37 H 0.416 0.584 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.283 0.717 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 7.329 13.773 15.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.300 6.300 3 C -0.015 4.015 4 C -0.014 4.014 5 O -0.292 6.292 6 C -0.022 4.022 7 C -0.004 4.004 8 N -0.875 5.875 9 S 2.787 3.213 10 O -0.968 6.968 11 O -0.964 6.964 12 C -0.723 4.723 13 C -0.171 4.171 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.490 4.490 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.419 5.419 21 Si 0.736 3.264 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.189 1.189 25 C -0.143 4.143 26 H 0.105 0.895 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.250 0.750 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 1.165 7.294 13.256 15.175 hybrid contribution -1.477 -0.293 -0.098 1.509 sum -0.312 7.001 13.158 14.908 Atomic orbital electron populations 1.22752 0.80996 1.03043 0.99730 1.87984 1.19653 1.27028 1.95333 1.22555 0.92425 0.85766 1.00786 1.22500 0.93487 0.97390 0.87977 1.88051 1.21662 1.81973 1.37492 1.22711 0.82138 1.00005 0.97309 1.21283 1.00766 0.93515 0.84829 1.55439 1.66865 1.39791 1.25447 1.01567 0.73491 0.74427 0.71849 1.93502 1.30352 1.87011 1.85925 1.93531 1.79632 1.57598 1.65675 1.29728 1.08530 1.17286 1.16726 1.20069 0.99493 0.91626 1.05938 1.20800 0.96783 0.96047 1.00374 1.21626 0.93151 0.99378 0.99736 1.17676 0.92530 0.90759 0.90193 1.19585 1.02688 0.98721 1.28029 0.89979 1.25926 0.98351 0.94971 0.95003 1.69784 1.36244 1.07723 1.28145 0.86305 0.80254 0.78351 0.81518 1.18693 1.20265 1.18857 1.20779 0.94526 0.98507 1.00468 0.89467 0.94437 0.93815 0.92086 0.92225 0.92491 0.91899 0.91882 0.92585 0.90237 0.89016 0.74992 0.87642 0.88428 0.85784 0.90569 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.42 16 2 O -0.38 -4.95 10.67 -40.08 -0.43 -5.38 16 3 C 0.06 0.61 6.32 37.16 0.23 0.85 16 4 C 0.06 0.61 6.32 37.16 0.23 0.85 16 5 O -0.37 -4.86 10.11 -40.08 -0.41 -5.26 16 6 C 0.06 0.61 6.13 37.16 0.23 0.84 16 7 C 0.12 1.64 6.61 -4.04 -0.03 1.62 16 8 N -1.12 -17.01 5.96 -10.61 -0.06 -17.07 16 9 S 2.69 51.36 5.73 -107.50 -0.62 50.75 16 10 O -0.98 -19.86 16.74 -57.17 -0.96 -20.81 16 11 O -0.97 -20.87 17.26 -57.17 -0.99 -21.86 16 12 C -0.63 -14.07 5.94 -39.66 -0.24 -14.31 16 13 C -0.15 -3.29 9.53 -39.29 -0.37 -3.67 16 14 C -0.12 -2.75 10.02 -39.66 -0.40 -3.15 16 15 C -0.12 -3.02 8.70 -38.87 -0.34 -3.36 16 16 C 0.09 2.43 5.58 -106.82 -0.60 1.83 16 17 C -0.46 -12.07 9.05 -37.74 -0.34 -12.41 16 18 H 0.08 2.07 7.91 -52.49 -0.42 1.65 16 19 C 0.08 1.86 5.14 -17.34 -0.09 1.77 16 20 N -0.79 -19.96 10.95 55.55 0.61 -19.35 16 21 Si 0.91 18.34 29.60 -169.99 -5.03 13.31 16 22 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 23 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 24 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 25 C -0.12 -3.00 9.26 -38.87 -0.36 -3.36 16 26 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.11 7.75 -51.93 -0.40 0.71 16 37 H 0.42 5.69 8.51 -34.47 -0.29 5.39 16 38 H 0.11 2.06 7.61 -52.48 -0.40 1.66 16 39 H 0.10 1.94 8.06 -52.49 -0.42 1.51 16 40 H 0.12 3.19 6.15 -52.49 -0.32 2.87 16 41 H 0.28 6.48 8.30 -40.82 -0.34 6.14 16 42 H 0.11 2.65 7.60 -52.49 -0.40 2.25 16 LS Contribution 371.26 15.07 5.59 5.59 Total: -1.00 -32.93 371.26 -9.25 -42.18 By element: Atomic # 1 Polarization: 15.00 SS G_CDS: -6.02 Total: 8.98 kcal Atomic # 6 Polarization: -30.13 SS G_CDS: -0.95 Total: -31.08 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.55 Total: -36.42 kcal Atomic # 8 Polarization: -50.53 SS G_CDS: -2.78 Total: -53.31 kcal Atomic # 14 Polarization: 18.34 SS G_CDS: -5.03 Total: 13.31 kcal Atomic # 16 Polarization: 51.36 SS G_CDS: -0.62 Total: 50.75 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.93 -9.25 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619478795.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.872 kcal (2) G-P(sol) polarization free energy of solvation -32.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds