Wall clock time and date at job start Tue Mar 31 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99656 * 2 1 4 4 C 1.52999 * 109.46773 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47270 * 59.99632 * 4 3 2 6 6 O 1.42903 * 109.47286 * 299.99625 * 4 3 2 7 7 C 1.53010 * 109.47176 * 179.97438 * 4 3 2 8 8 N 1.46498 * 109.47031 * 185.00190 * 7 4 3 9 9 S 1.65599 * 120.00063 * 164.99877 * 8 7 4 10 10 O 1.42097 * 106.40444 * 178.53634 * 9 8 7 11 11 O 1.42107 * 106.40049 * 311.45890 * 9 8 7 12 12 C 1.76208 * 107.21637 * 64.99563 * 9 8 7 13 13 C 1.38657 * 119.87483 * 269.72922 * 12 9 8 14 14 C 1.38615 * 120.49902 * 179.72459 * 13 12 9 15 15 C 1.37633 * 120.24850 * 0.54917 * 14 13 12 16 16 C 1.40703 * 119.74446 * 359.73033 * 15 14 13 17 17 C 1.41391 * 120.24137 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99557 * 155.24967 * 17 16 15 19 19 C 1.39937 * 120.00603 * 335.24536 * 17 16 15 20 20 N 1.30824 * 119.99831 * 342.25612 * 19 17 16 21 21 Si 1.86803 * 120.00595 * 162.24969 * 19 17 16 22 22 H 1.48501 * 109.46764 * 60.00276 * 21 19 17 23 23 H 1.48499 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47088 * 300.00819 * 21 19 17 25 25 C 1.37592 * 119.87397 * 90.00360 * 12 9 8 26 26 H 1.08997 * 109.47060 * 60.00193 * 1 2 3 27 27 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46990 * 300.00433 * 1 2 3 29 29 H 1.09006 * 109.47266 * 299.99546 * 3 2 1 30 30 H 1.08992 * 109.47606 * 59.99883 * 3 2 1 31 31 H 1.09006 * 109.47124 * 60.00332 * 5 4 3 32 32 H 1.09007 * 109.47085 * 179.97438 * 5 4 3 33 33 H 1.08991 * 109.47082 * 300.00003 * 5 4 3 34 34 H 0.96697 * 113.99814 * 300.00178 * 6 4 3 35 35 H 1.09002 * 109.46568 * 304.99414 * 7 4 3 36 36 H 1.08994 * 109.46891 * 64.99873 * 7 4 3 37 37 H 0.97002 * 119.99903 * 344.99141 * 8 7 4 38 38 H 1.08004 * 119.75297 * 359.97438 * 13 12 9 39 39 H 1.08003 * 119.87233 * 180.25368 * 14 13 12 40 40 H 1.08002 * 120.12931 * 179.74916 * 15 14 13 41 41 H 0.97005 * 120.00258 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.13058 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2501 6 8 3.9576 0.4754 1.1659 7 6 4.1578 2.5825 -0.0013 8 7 5.6133 2.4689 -0.1223 9 16 6.5173 3.7979 -0.5207 10 8 7.8737 3.3744 -0.5242 11 8 5.8851 4.3903 -1.6471 12 6 6.3597 4.9514 0.8020 13 6 5.3448 5.8959 0.7776 14 6 5.2053 6.8057 1.8140 15 6 6.0820 6.7879 2.8748 16 6 7.1192 5.8378 2.9074 17 6 8.0254 5.8097 3.9924 18 1 8.5442 4.8951 4.2391 19 6 8.2502 6.9668 4.7466 20 7 7.9140 8.1363 4.2661 21 14 9.0301 6.8417 6.4394 22 1 10.3754 6.2244 6.3201 23 1 9.1584 8.1995 7.0269 24 1 8.1761 6.0017 7.3170 25 6 7.2476 4.9152 1.8525 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 3.6644 0.9666 -2.1400 32 1 5.0731 0.3399 -1.2508 33 1 3.5431 -0.5701 -1.2501 34 1 3.7053 0.9001 1.9972 35 1 3.7667 3.1538 -0.8432 36 1 3.9092 3.0912 0.9300 37 1 6.0476 1.6151 0.0310 38 1 4.6552 5.9202 -0.0533 39 1 4.4086 7.5344 1.7865 40 1 5.9740 7.5004 3.6793 41 1 8.0694 8.9384 4.7890 42 1 8.0398 4.1813 1.8676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619485949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:55 Heat of formation + Delta-G solvation = -157.546123 kcal Electronic energy + Delta-G solvation = -26354.042703 eV Core-core repulsion = 22425.842892 eV Total energy + Delta-G solvation = -3928.199811 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -39.31622 -37.67349 -37.17226 -36.65166 -35.31787 -34.38423 -33.87047 -31.47606 -30.11048 -29.82433 -27.65973 -26.75641 -25.51953 -24.82509 -21.92809 -21.04451 -20.67903 -19.13640 -18.02120 -17.66695 -17.01347 -16.38736 -16.27510 -15.95587 -15.58554 -15.24813 -15.02929 -14.74997 -14.68809 -14.25979 -13.65953 -13.49928 -13.36357 -13.16138 -12.61101 -12.44861 -12.31974 -11.96688 -11.90642 -11.79965 -11.67753 -11.59220 -11.55073 -11.40189 -11.38184 -11.08899 -10.88330 -10.84525 -10.64129 -10.13073 -9.94158 -9.84974 -9.72396 -9.36973 -9.20488 -8.07493 -7.73649 -6.94894 -4.56354 0.98822 2.16291 2.61006 2.98092 3.00209 3.05788 3.26075 3.65112 3.81105 4.14683 4.22138 4.40061 4.58790 4.59835 4.66967 4.97340 5.03142 5.06744 5.17006 5.21877 5.34048 5.38452 5.40570 5.59912 5.77017 5.82371 5.94198 6.02787 6.13904 6.15498 6.62795 6.72791 6.81273 6.83924 7.00392 7.16521 7.21368 7.35055 7.55958 7.68604 7.77485 7.91110 8.37011 8.64021 8.68672 10.00756 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003266 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.259373 B = 8570.212884 C = 9229.598564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.376 6.376 3 C 0.035 3.965 4 C 0.131 3.869 5 C -0.137 4.137 6 O -0.545 6.545 7 C 0.097 3.903 8 N -1.113 6.113 9 S 2.690 3.310 10 O -0.970 6.970 11 O -0.975 6.975 12 C -0.631 4.631 13 C -0.152 4.152 14 C -0.121 4.121 15 C -0.119 4.119 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.083 0.917 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.913 3.087 22 H -0.263 1.263 23 H -0.277 1.277 24 H -0.262 1.262 25 C -0.123 4.123 26 H 0.040 0.960 27 H 0.085 0.915 28 H 0.041 0.959 29 H 0.062 0.938 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.378 0.622 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.124 0.876 41 H 0.284 0.716 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.384 -10.087 -4.305 16.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C -0.043 4.043 4 C 0.089 3.911 5 C -0.194 4.194 6 O -0.351 6.351 7 C -0.031 4.031 8 N -0.872 5.872 9 S 2.785 3.215 10 O -0.960 6.960 11 O -0.965 6.965 12 C -0.723 4.723 13 C -0.173 4.173 14 C -0.140 4.140 15 C -0.139 4.139 16 C 0.088 3.912 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.143 4.143 20 N -0.418 5.418 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.187 1.187 25 C -0.144 4.144 26 H 0.059 0.941 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.226 0.774 35 H 0.106 0.894 36 H 0.092 0.908 37 H 0.253 0.747 38 H 0.123 0.877 39 H 0.116 0.884 40 H 0.142 0.858 41 H 0.095 0.905 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -11.612 -10.149 -5.538 16.386 hybrid contribution -0.204 0.855 1.996 2.181 sum -11.816 -9.294 -3.542 15.445 Atomic orbital electron populations 1.22771 0.81214 1.02762 0.99970 1.87946 1.19318 1.26846 1.95369 1.23210 0.94139 0.85574 1.01410 1.21363 0.90297 0.91119 0.88323 1.21673 1.02361 1.01111 0.94248 1.86587 1.80990 1.52149 1.15325 1.21780 0.80830 0.97267 1.03204 1.55470 1.15328 1.26939 1.89510 1.01664 0.72456 0.72855 0.74498 1.93548 1.33093 1.81845 1.87536 1.93507 1.77100 1.77048 1.48880 1.29738 1.07507 1.16909 1.18165 1.20073 0.99233 0.98346 0.99656 1.20804 0.99357 0.98420 0.95429 1.21631 0.93621 1.00508 0.98112 1.17681 0.91489 0.90759 0.91235 1.19589 1.21600 0.97047 1.10732 0.89925 1.25942 0.94233 0.94577 0.99598 1.69774 1.36461 0.98915 1.36662 0.86282 0.80355 0.78394 0.81285 1.18772 1.20236 1.18689 1.20764 0.98014 1.02649 0.93018 0.94098 0.89610 0.94078 0.91962 0.92520 0.91044 0.91495 0.90941 0.77434 0.89392 0.90784 0.74651 0.87669 0.88429 0.85805 0.90461 0.87012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.38 -3.88 9.92 -44.85 -0.44 -4.33 16 3 C 0.03 0.32 5.03 37.16 0.19 0.50 16 4 C 0.13 1.38 0.84 -90.62 -0.08 1.31 16 5 C -0.14 -1.45 8.47 37.16 0.31 -1.14 16 6 O -0.54 -6.17 12.68 -44.85 -0.57 -6.73 16 7 C 0.10 1.13 5.37 -4.04 -0.02 1.11 16 8 N -1.11 -15.45 5.40 -10.61 -0.06 -15.51 16 9 S 2.69 49.25 5.74 -107.50 -0.62 48.64 16 10 O -0.97 -20.42 17.27 -57.17 -0.99 -21.41 16 11 O -0.98 -19.31 16.73 -57.17 -0.96 -20.27 16 12 C -0.63 -13.40 5.94 -39.66 -0.24 -13.64 16 13 C -0.15 -3.17 9.53 -39.29 -0.37 -3.54 16 14 C -0.12 -2.62 10.02 -39.66 -0.40 -3.02 16 15 C -0.12 -2.89 8.70 -38.87 -0.34 -3.23 16 16 C 0.09 2.34 5.57 -106.82 -0.60 1.74 16 17 C -0.46 -11.68 9.05 -37.75 -0.34 -12.02 16 18 H 0.08 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 20 N -0.79 -19.61 10.97 55.55 0.61 -19.01 16 21 Si 0.91 17.88 29.60 -169.99 -5.03 12.85 16 22 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 24 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 25 C -0.12 -2.91 9.26 -38.87 -0.36 -3.27 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.72 6.89 -51.93 -0.36 0.37 16 33 H 0.07 0.79 7.68 -51.93 -0.40 0.39 16 34 H 0.38 3.22 9.05 45.56 0.41 3.63 16 35 H 0.09 0.98 7.75 -51.93 -0.40 0.58 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.42 5.30 7.58 -34.47 -0.26 5.04 16 38 H 0.11 1.95 7.59 -52.48 -0.40 1.55 16 39 H 0.10 1.84 8.06 -52.48 -0.42 1.42 16 40 H 0.12 3.07 6.18 -52.49 -0.32 2.74 16 41 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 42 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 LS Contribution 365.13 15.07 5.50 5.50 Total: -1.00 -31.88 365.13 -8.83 -40.70 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -5.06 Total: 11.74 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -1.22 Total: -32.18 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.55 Total: -34.51 kcal Atomic # 8 Polarization: -49.78 SS G_CDS: -2.96 Total: -52.74 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 49.25 SS G_CDS: -0.62 Total: 48.64 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.88 -8.83 -40.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.843 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds