Wall clock time and date at job start Tue Mar 31 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42899 * 113.99656 * 2 1 4 4 C 1.52999 * 109.46773 * 180.02562 * 3 2 1 5 5 C 1.52999 * 109.47270 * 59.99632 * 4 3 2 6 6 O 1.42903 * 109.47286 * 299.99625 * 4 3 2 7 7 C 1.53010 * 109.47176 * 179.97438 * 4 3 2 8 8 N 1.46498 * 109.47031 * 185.00190 * 7 4 3 9 9 S 1.65599 * 120.00063 * 164.99877 * 8 7 4 10 10 O 1.42097 * 106.40444 * 178.53634 * 9 8 7 11 11 O 1.42107 * 106.40049 * 311.45890 * 9 8 7 12 12 C 1.76208 * 107.21637 * 64.99563 * 9 8 7 13 13 C 1.38657 * 119.87483 * 269.72922 * 12 9 8 14 14 C 1.38615 * 120.49902 * 179.72459 * 13 12 9 15 15 C 1.37633 * 120.24850 * 0.54917 * 14 13 12 16 16 C 1.40703 * 119.74446 * 359.73033 * 15 14 13 17 17 C 1.41391 * 120.24137 * 180.02562 * 16 15 14 18 18 H 1.08000 * 119.99557 * 155.24967 * 17 16 15 19 19 C 1.39937 * 120.00603 * 335.24536 * 17 16 15 20 20 N 1.30824 * 119.99831 * 342.25612 * 19 17 16 21 21 Si 1.86803 * 120.00595 * 162.24969 * 19 17 16 22 22 H 1.48501 * 109.46764 * 60.00276 * 21 19 17 23 23 H 1.48499 * 109.47335 * 180.02562 * 21 19 17 24 24 H 1.48502 * 109.47088 * 300.00819 * 21 19 17 25 25 C 1.37592 * 119.87397 * 90.00360 * 12 9 8 26 26 H 1.08997 * 109.47060 * 60.00193 * 1 2 3 27 27 H 1.09002 * 109.46926 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46990 * 300.00433 * 1 2 3 29 29 H 1.09006 * 109.47266 * 299.99546 * 3 2 1 30 30 H 1.08992 * 109.47606 * 59.99883 * 3 2 1 31 31 H 1.09006 * 109.47124 * 60.00332 * 5 4 3 32 32 H 1.09007 * 109.47085 * 179.97438 * 5 4 3 33 33 H 1.08991 * 109.47082 * 300.00003 * 5 4 3 34 34 H 0.96697 * 113.99814 * 300.00178 * 6 4 3 35 35 H 1.09002 * 109.46568 * 304.99414 * 7 4 3 36 36 H 1.08994 * 109.46891 * 64.99873 * 7 4 3 37 37 H 0.97002 * 119.99903 * 344.99141 * 8 7 4 38 38 H 1.08004 * 119.75297 * 359.97438 * 13 12 9 39 39 H 1.08003 * 119.87233 * 180.25368 * 14 13 12 40 40 H 1.08002 * 120.12931 * 179.74916 * 15 14 13 41 41 H 0.97005 * 120.00258 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.13058 * 359.97438 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 3.9864 0.4256 -1.2501 6 8 3.9576 0.4754 1.1659 7 6 4.1578 2.5825 -0.0013 8 7 5.6133 2.4689 -0.1223 9 16 6.5173 3.7979 -0.5207 10 8 7.8737 3.3744 -0.5242 11 8 5.8851 4.3903 -1.6471 12 6 6.3597 4.9514 0.8020 13 6 5.3448 5.8959 0.7776 14 6 5.2053 6.8057 1.8140 15 6 6.0820 6.7879 2.8748 16 6 7.1192 5.8378 2.9074 17 6 8.0254 5.8097 3.9924 18 1 8.5442 4.8951 4.2391 19 6 8.2502 6.9668 4.7466 20 7 7.9140 8.1363 4.2661 21 14 9.0301 6.8417 6.4394 22 1 10.3754 6.2244 6.3201 23 1 9.1584 8.1995 7.0269 24 1 8.1761 6.0017 7.3170 25 6 7.2476 4.9152 1.8525 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.6886 1.8464 -0.8901 30 1 1.6886 1.8464 0.8899 31 1 3.6644 0.9666 -2.1400 32 1 5.0731 0.3399 -1.2508 33 1 3.5431 -0.5701 -1.2501 34 1 3.7053 0.9001 1.9972 35 1 3.7667 3.1538 -0.8432 36 1 3.9092 3.0912 0.9300 37 1 6.0476 1.6151 0.0310 38 1 4.6552 5.9202 -0.0533 39 1 4.4086 7.5344 1.7865 40 1 5.9740 7.5004 3.6793 41 1 8.0694 8.9384 4.7890 42 1 8.0398 4.1813 1.8676 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619485949.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:54 Heat of formation + Delta-G solvation = -182.345905 kcal Electronic energy + Delta-G solvation = -26355.118102 eV Core-core repulsion = 22425.842892 eV Total energy + Delta-G solvation = -3929.275210 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.11200 -39.43871 -38.27628 -37.88181 -36.90496 -35.67219 -35.40926 -32.36010 -31.90909 -31.57830 -28.33844 -27.56055 -27.32654 -25.62100 -23.66068 -22.79814 -21.53911 -20.60515 -19.63709 -18.72004 -18.28982 -17.70837 -17.12604 -16.98387 -16.93583 -16.69382 -16.51293 -15.89541 -15.76181 -15.40603 -15.18183 -15.02585 -14.38955 -14.29991 -14.05542 -13.71252 -13.27860 -13.26524 -13.19197 -13.06374 -13.06131 -13.03424 -12.98336 -12.85448 -12.68701 -12.56013 -12.40499 -12.21371 -11.64127 -11.56647 -11.38344 -11.13506 -10.94754 -10.58380 -10.45490 -9.84220 -9.55221 -8.73201 -6.45262 -0.50102 0.41269 0.85348 1.37290 1.46564 1.49993 2.09130 2.17970 2.54957 2.75205 2.80642 3.38109 3.50081 3.51872 3.73325 3.86701 3.93076 4.31309 4.39608 4.43912 4.46147 4.47289 4.59101 4.60931 4.73391 4.85642 4.86517 4.90172 4.91407 5.01704 5.03298 5.08222 5.20823 5.34003 5.41714 5.57295 5.89295 5.94290 6.06239 6.11841 6.23988 6.53021 6.80066 6.85064 6.85090 8.24808 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015072 B = 0.003266 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.259373 B = 8570.212884 C = 9229.598564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.401 6.401 3 C 0.034 3.966 4 C 0.135 3.865 5 C -0.141 4.141 6 O -0.561 6.561 7 C 0.087 3.913 8 N -1.098 6.098 9 S 2.722 3.278 10 O -0.998 6.998 11 O -0.984 6.984 12 C -0.637 4.637 13 C -0.145 4.145 14 C -0.122 4.122 15 C -0.140 4.140 16 C 0.063 3.937 17 C -0.500 4.500 18 H 0.079 0.921 19 C 0.037 3.963 20 N -0.825 5.825 21 Si 0.984 3.016 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.257 1.257 25 C -0.145 4.145 26 H 0.051 0.949 27 H 0.093 0.907 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.066 0.934 34 H 0.388 0.612 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.426 0.574 38 H 0.136 0.864 39 H 0.128 0.872 40 H 0.112 0.888 41 H 0.292 0.708 42 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.959 -10.394 -4.608 18.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.320 6.320 3 C -0.043 4.043 4 C 0.093 3.907 5 C -0.198 4.198 6 O -0.369 6.369 7 C -0.039 4.039 8 N -0.861 5.861 9 S 2.814 3.186 10 O -0.989 6.989 11 O -0.973 6.973 12 C -0.726 4.726 13 C -0.166 4.166 14 C -0.141 4.141 15 C -0.160 4.160 16 C 0.059 3.941 17 C -0.529 4.529 18 H 0.097 0.903 19 C -0.179 4.179 20 N -0.450 5.450 21 Si 0.804 3.196 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.181 1.181 25 C -0.166 4.166 26 H 0.070 0.930 27 H 0.111 0.889 28 H 0.067 0.933 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.101 0.899 32 H 0.079 0.921 33 H 0.085 0.915 34 H 0.238 0.762 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.263 0.737 38 H 0.154 0.846 39 H 0.146 0.854 40 H 0.130 0.870 41 H 0.103 0.897 42 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.201 -10.433 -5.824 17.806 hybrid contribution 0.160 0.875 1.951 2.144 sum -13.041 -9.558 -3.874 16.627 Atomic orbital electron populations 1.22931 0.79740 1.03649 1.00861 1.87903 1.20991 1.27529 1.95584 1.23215 0.92836 0.85541 1.02749 1.21327 0.91403 0.90013 0.87976 1.21723 1.01961 1.01144 0.94975 1.86563 1.81350 1.52776 1.16172 1.22075 0.79035 0.98577 1.04221 1.55085 1.16312 1.25613 1.89107 1.00721 0.71815 0.72670 0.73383 1.93506 1.35513 1.82208 1.87658 1.93493 1.77213 1.77858 1.48778 1.30225 1.06571 1.17757 1.18058 1.20498 0.99055 0.97141 0.99917 1.21154 0.99352 0.98945 0.94617 1.21645 0.94567 1.00681 0.99102 1.18030 0.92191 0.91806 0.92036 1.19847 1.22955 0.97755 1.12348 0.90283 1.26754 0.94429 0.93769 1.02925 1.69815 1.37466 0.99609 1.38134 0.85223 0.79233 0.78772 0.76364 1.18656 1.19079 1.18120 1.20816 0.99038 1.02898 0.93859 0.93033 0.88859 0.93313 0.90559 0.91240 0.89866 0.92105 0.91477 0.76222 0.88230 0.89904 0.73687 0.84604 0.85384 0.87012 0.89750 0.87507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 11.01 113.37 1.25 1.54 16 2 O -0.40 -7.48 9.92 -139.78 -1.39 -8.86 16 3 C 0.03 0.54 5.03 71.98 0.36 0.90 16 4 C 0.14 2.56 0.84 -10.79 -0.01 2.55 16 5 C -0.14 -2.75 8.47 71.98 0.61 -2.14 16 6 O -0.56 -11.85 12.68 -139.78 -1.77 -13.62 16 7 C 0.09 1.82 5.37 86.38 0.46 2.29 16 8 N -1.10 -28.58 5.40 -187.48 -1.01 -29.60 16 9 S 2.72 96.03 5.74 -56.49 -0.32 95.71 16 10 O -1.00 -41.68 17.27 -128.00 -2.21 -43.89 16 11 O -0.98 -36.64 16.73 -128.00 -2.14 -38.78 16 12 C -0.64 -26.58 5.94 22.22 0.13 -26.44 16 13 C -0.15 -5.78 9.53 22.46 0.21 -5.57 16 14 C -0.12 -5.14 10.02 22.22 0.22 -4.91 16 15 C -0.14 -6.92 8.70 22.73 0.20 -6.73 16 16 C 0.06 3.27 5.57 -21.29 -0.12 3.15 16 17 C -0.50 -26.28 9.05 23.46 0.21 -26.07 16 18 H 0.08 4.02 7.91 -2.91 -0.02 3.99 16 19 C 0.04 1.79 5.14 85.25 0.44 2.23 16 20 N -0.82 -41.62 10.97 21.82 0.24 -41.38 16 21 Si 0.98 36.97 29.60 68.60 2.03 39.00 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 24 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 25 C -0.15 -7.00 9.26 22.73 0.21 -6.79 16 26 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 30 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.06 1.23 6.89 -2.38 -0.02 1.22 16 33 H 0.07 1.38 7.68 -2.39 -0.02 1.36 16 34 H 0.39 6.04 9.05 -74.06 -0.67 5.37 16 35 H 0.10 1.89 7.75 -2.39 -0.02 1.87 16 36 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.43 10.22 7.58 -96.74 -0.73 9.48 16 38 H 0.14 4.55 7.59 -2.91 -0.02 4.53 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.11 5.70 6.18 -2.91 -0.02 5.68 16 41 H 0.29 13.27 8.30 -92.70 -0.77 12.50 16 42 H 0.11 5.09 7.60 -2.91 -0.02 5.07 16 Total: -1.00 -68.76 365.13 -2.74 -71.50 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.35 Total: 35.91 kcal Atomic # 6 Polarization: -70.18 SS G_CDS: 4.18 Total: -65.99 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -0.77 Total: -70.98 kcal Atomic # 8 Polarization: -97.64 SS G_CDS: -7.51 Total: -105.15 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 2.03 Total: 39.00 kcal Atomic # 16 Polarization: 96.03 SS G_CDS: -0.32 Total: 95.71 kcal Total: -68.76 -2.74 -71.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619485949.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.845 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds