Wall clock time and date at job start Tue Mar 31 2020 05:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99954 * 2 1 4 4 C 1.53005 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46911 * 185.00148 * 4 3 2 6 6 C 1.52999 * 109.47076 * 305.00141 * 4 3 2 7 7 C 1.53000 * 109.47344 * 185.12322 * 6 4 3 8 8 O 1.42898 * 109.47060 * 183.66509 * 7 6 4 9 9 N 1.46496 * 109.47320 * 64.99873 * 4 3 2 10 10 S 1.65604 * 119.99708 * 95.79195 * 9 4 3 11 11 O 1.42100 * 106.40166 * 177.66954 * 10 9 4 12 12 O 1.42103 * 106.40258 * 310.58953 * 10 9 4 13 13 C 1.76203 * 107.21738 * 64.12791 * 10 9 4 14 14 C 1.38648 * 119.87435 * 265.63478 * 13 10 9 15 15 C 1.38617 * 120.50048 * 179.71858 * 14 13 10 16 16 C 1.37647 * 120.24597 * 0.55828 * 15 14 13 17 17 C 1.40699 * 119.74443 * 359.72477 * 16 15 14 18 18 C 1.41389 * 120.24597 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00114 * 152.55019 * 18 17 16 20 20 C 1.39947 * 120.00180 * 332.56172 * 18 17 16 21 21 N 1.30820 * 120.00411 * 158.09886 * 20 18 17 22 22 Si 1.86805 * 119.99518 * 338.09953 * 20 18 17 23 23 H 1.48496 * 109.47149 * 92.48954 * 22 20 18 24 24 H 1.48507 * 109.46810 * 212.48962 * 22 20 18 25 25 H 1.48507 * 109.47093 * 332.48400 * 22 20 18 26 26 C 1.37594 * 119.87326 * 85.90848 * 13 10 9 27 27 H 1.08997 * 109.47096 * 299.99624 * 1 2 3 28 28 H 1.09011 * 109.46928 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47032 * 60.00077 * 1 2 3 30 30 H 1.08998 * 109.47320 * 300.00231 * 3 2 1 31 31 H 1.09005 * 109.46826 * 60.00316 * 3 2 1 32 32 H 1.09010 * 109.47147 * 305.12685 * 6 4 3 33 33 H 1.08996 * 109.47511 * 65.11739 * 6 4 3 34 34 H 1.09001 * 109.46687 * 303.66553 * 7 6 4 35 35 H 1.08997 * 109.46970 * 63.66610 * 7 6 4 36 36 H 0.96703 * 113.99698 * 179.97438 * 8 7 6 37 37 H 0.97000 * 120.00639 * 275.80005 * 9 4 3 38 38 H 1.07994 * 119.75512 * 0.02562 * 14 13 10 39 39 H 1.07999 * 119.88170 * 180.25457 * 15 14 13 40 40 H 1.07995 * 120.12947 * 179.74265 * 16 15 14 41 41 H 0.96994 * 119.99902 * 179.97438 * 21 20 18 42 42 H 1.08008 * 120.12941 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0889 6 6 3.9790 0.3194 1.1806 7 6 5.5071 0.3031 1.2555 8 8 5.9232 -0.5726 2.3053 9 7 3.9757 0.5644 -1.2527 10 16 4.4640 1.5127 -2.5195 11 8 4.8752 0.6250 -3.5501 12 8 3.4534 2.4957 -2.6978 13 6 5.9100 2.3745 -1.9988 14 6 5.7999 3.6504 -1.4676 15 6 6.9283 4.3379 -1.0485 16 6 8.1737 3.7636 -1.1665 17 6 8.2980 2.4716 -1.7095 18 6 9.5720 1.8714 -1.8350 19 1 9.6664 0.7957 -1.8165 20 6 10.7108 2.6712 -1.9829 21 7 11.8896 2.1942 -1.6758 22 14 10.5476 4.4200 -2.6189 23 1 10.4102 5.3531 -1.4719 24 1 11.7567 4.7759 -3.4044 25 1 9.3464 4.5213 -3.4862 26 6 7.1448 1.7808 -2.1261 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 -0.8899 31 1 1.6885 1.8463 0.8901 32 1 3.5742 0.7315 2.1051 33 1 3.6110 -0.6975 1.0446 34 1 5.9135 -0.0479 0.3070 35 1 5.8717 1.3103 1.4566 36 1 6.8826 -0.6325 2.4104 37 1 3.9811 -0.4016 -1.3398 38 1 4.8272 4.1103 -1.3751 39 1 6.8305 5.3297 -0.6325 40 1 9.0519 4.3025 -0.8432 41 1 12.6789 2.7484 -1.7787 42 1 7.2287 0.7884 -2.5439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:31 Heat of formation + Delta-G solvation = -159.592773 kcal Electronic energy + Delta-G solvation = -27042.641372 eV Core-core repulsion = 23114.352812 eV Total energy + Delta-G solvation = -3928.288560 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -38.67799 -37.97912 -36.94228 -36.77228 -35.44058 -35.39023 -33.88321 -30.81110 -30.74356 -30.22773 -28.55206 -26.16193 -25.46842 -23.10471 -22.46579 -21.15409 -20.88609 -19.37688 -18.16549 -17.34889 -17.19958 -16.53827 -16.38152 -16.02358 -15.67173 -15.32064 -15.14788 -15.06660 -14.84758 -14.30276 -13.85211 -13.77539 -13.24701 -12.94749 -12.78651 -12.69264 -12.29460 -12.19715 -11.96017 -11.77491 -11.74272 -11.66846 -11.52180 -11.30905 -11.19381 -11.14550 -10.88507 -10.81495 -10.42175 -10.11971 -9.85000 -9.81220 -9.73491 -9.47132 -9.21486 -8.36454 -7.97592 -7.19623 -4.71593 0.85489 1.84087 2.34558 2.93453 3.05861 3.14452 3.36062 3.68873 3.77986 4.04607 4.14197 4.26071 4.78251 4.90408 4.99513 5.05020 5.10074 5.18315 5.21570 5.33030 5.36188 5.47621 5.52361 5.66198 5.73877 5.80325 5.83032 5.95306 6.14020 6.16098 6.28897 6.39215 6.51844 6.78063 6.99147 7.03481 7.12823 7.15495 7.33689 7.54547 7.70256 7.73882 8.09514 8.35146 8.52950 9.81667 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.004148 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.856504 B = 6748.145008 C = 7497.542827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.383 6.383 3 C 0.043 3.957 4 C 0.164 3.836 5 H 0.104 0.896 6 C -0.117 4.117 7 C 0.071 3.929 8 O -0.579 6.579 9 N -1.110 6.110 10 S 2.686 3.314 11 O -0.968 6.968 12 O -0.972 6.972 13 C -0.624 4.624 14 C -0.166 4.166 15 C -0.088 4.088 16 C -0.205 4.205 17 C 0.074 3.926 18 C -0.442 4.442 19 H 0.095 0.905 20 C 0.086 3.914 21 N -0.792 5.792 22 Si 0.907 3.093 23 H -0.266 1.266 24 H -0.286 1.286 25 H -0.245 1.245 26 C -0.104 4.104 27 H 0.039 0.961 28 H 0.084 0.916 29 H 0.041 0.959 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.054 0.946 35 H 0.050 0.950 36 H 0.382 0.618 37 H 0.419 0.581 38 H 0.112 0.888 39 H 0.102 0.898 40 H 0.108 0.892 41 H 0.289 0.711 42 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.759 -0.789 5.824 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.302 6.302 3 C -0.036 4.036 4 C 0.056 3.944 5 H 0.122 0.878 6 C -0.156 4.156 7 C -0.007 4.007 8 O -0.385 6.385 9 N -0.868 5.868 10 S 2.780 3.220 11 O -0.958 6.958 12 O -0.962 6.962 13 C -0.715 4.715 14 C -0.187 4.187 15 C -0.108 4.108 16 C -0.224 4.224 17 C 0.070 3.930 18 C -0.469 4.469 19 H 0.113 0.887 20 C -0.136 4.136 21 N -0.415 5.415 22 Si 0.733 3.267 23 H -0.192 1.192 24 H -0.213 1.213 25 H -0.168 1.168 26 C -0.125 4.125 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.059 0.941 30 H 0.087 0.913 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.103 0.897 34 H 0.072 0.928 35 H 0.068 0.932 36 H 0.229 0.771 37 H 0.254 0.746 38 H 0.130 0.870 39 H 0.120 0.880 40 H 0.125 0.875 41 H 0.100 0.900 42 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -14.431 -0.834 5.099 15.328 hybrid contribution 1.233 0.981 0.118 1.580 sum -13.198 0.147 5.217 14.192 Atomic orbital electron populations 1.22732 0.81398 1.02553 0.99918 1.87871 1.19308 1.27576 1.95433 1.23169 0.93575 0.85245 1.01573 1.20750 0.92159 0.97574 0.83920 0.87784 1.21665 0.94693 1.01962 0.97261 1.22229 0.94852 0.93301 0.90299 1.86365 1.28113 1.68219 1.55834 1.55617 1.82061 1.20027 1.29109 1.01851 0.74307 0.73205 0.72589 1.93562 1.83517 1.65215 1.53505 1.93515 1.57264 1.60803 1.84625 1.29949 1.15841 1.08120 1.17595 1.20061 0.98048 0.94055 1.06575 1.20704 0.92991 0.98097 0.98959 1.21359 0.96426 0.98231 1.06431 1.17757 0.93340 0.91557 0.90312 1.19529 0.88785 0.96612 1.41983 0.88674 1.26182 0.94574 1.00894 0.91915 1.69698 1.00092 1.39429 1.32268 0.86400 0.79077 0.81056 0.80172 1.19235 1.21259 1.16832 1.20793 0.90925 1.00046 1.00714 0.94242 0.89797 0.94076 0.91321 0.92278 0.90346 0.89651 0.92772 0.93218 0.77114 0.74630 0.86993 0.87955 0.87468 0.90037 0.86447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 16 2 O -0.38 -4.41 9.87 -35.23 -0.35 -4.76 16 3 C 0.04 0.48 5.77 37.16 0.21 0.69 16 4 C 0.16 1.98 2.58 -67.93 -0.17 1.81 16 5 H 0.10 1.23 7.42 -51.93 -0.39 0.84 16 6 C -0.12 -1.37 4.90 -26.73 -0.13 -1.50 16 7 C 0.07 0.94 6.98 37.16 0.26 1.20 16 8 O -0.58 -7.72 13.66 -35.23 -0.48 -8.20 16 9 N -1.11 -15.02 4.81 -4.89 -0.02 -15.05 16 10 S 2.69 46.53 5.64 -107.50 -0.61 45.92 16 11 O -0.97 -19.46 17.38 -57.17 -0.99 -20.46 16 12 O -0.97 -18.03 16.48 -57.17 -0.94 -18.97 16 13 C -0.62 -12.20 5.74 -39.67 -0.23 -12.42 16 14 C -0.17 -3.17 9.15 -39.29 -0.36 -3.53 16 15 C -0.09 -1.74 10.02 -39.66 -0.40 -2.14 16 16 C -0.20 -4.54 7.38 -38.87 -0.29 -4.83 16 17 C 0.07 1.75 5.13 -106.82 -0.55 1.20 16 18 C -0.44 -11.12 9.55 -37.74 -0.36 -11.48 16 19 H 0.10 2.48 8.06 -52.49 -0.42 2.06 16 20 C 0.09 2.10 5.36 -17.34 -0.09 2.01 16 21 N -0.79 -19.76 13.93 55.55 0.77 -18.99 16 22 Si 0.91 19.55 24.64 -169.99 -4.19 15.36 16 23 H -0.27 -5.48 6.51 56.52 0.37 -5.12 16 24 H -0.29 -5.94 7.11 56.52 0.40 -5.54 16 25 H -0.25 -5.50 7.09 56.52 0.40 -5.10 16 26 C -0.10 -2.26 9.26 -38.87 -0.36 -2.62 16 27 H 0.04 0.29 8.14 -51.93 -0.42 -0.14 16 28 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.83 7.67 -51.93 -0.40 0.44 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 33 H 0.08 1.04 7.73 -51.93 -0.40 0.64 16 34 H 0.05 0.75 7.66 -51.93 -0.40 0.35 16 35 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.38 3.84 9.12 45.56 0.42 4.25 16 37 H 0.42 5.08 8.85 -34.47 -0.30 4.78 16 38 H 0.11 1.89 7.51 -52.49 -0.39 1.49 16 39 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.11 2.35 4.60 -52.49 -0.24 2.11 16 41 H 0.29 6.50 8.30 -40.82 -0.34 6.17 16 42 H 0.12 2.47 7.70 -52.48 -0.40 2.07 16 LS Contribution 361.46 15.07 5.45 5.45 Total: -1.00 -30.65 361.46 -7.78 -38.43 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: -5.06 Total: 11.50 kcal Atomic # 6 Polarization: -28.88 SS G_CDS: -1.35 Total: -30.23 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.75 Total: -34.03 kcal Atomic # 8 Polarization: -49.63 SS G_CDS: -2.76 Total: -52.39 kcal Atomic # 14 Polarization: 19.55 SS G_CDS: -4.19 Total: 15.36 kcal Atomic # 16 Polarization: 46.53 SS G_CDS: -0.61 Total: 45.92 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.65 -7.78 -38.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.160 kcal (2) G-P(sol) polarization free energy of solvation -30.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds