Wall clock time and date at job start Tue Mar 31 2020 05:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 113.99954 * 2 1 4 4 C 1.53005 * 109.47157 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.46911 * 185.00148 * 4 3 2 6 6 C 1.52999 * 109.47076 * 305.00141 * 4 3 2 7 7 C 1.53000 * 109.47344 * 185.12322 * 6 4 3 8 8 O 1.42898 * 109.47060 * 183.66509 * 7 6 4 9 9 N 1.46496 * 109.47320 * 64.99873 * 4 3 2 10 10 S 1.65604 * 119.99708 * 95.79195 * 9 4 3 11 11 O 1.42100 * 106.40166 * 177.66954 * 10 9 4 12 12 O 1.42103 * 106.40258 * 310.58953 * 10 9 4 13 13 C 1.76203 * 107.21738 * 64.12791 * 10 9 4 14 14 C 1.38648 * 119.87435 * 265.63478 * 13 10 9 15 15 C 1.38617 * 120.50048 * 179.71858 * 14 13 10 16 16 C 1.37647 * 120.24597 * 0.55828 * 15 14 13 17 17 C 1.40699 * 119.74443 * 359.72477 * 16 15 14 18 18 C 1.41389 * 120.24597 * 180.02562 * 17 16 15 19 19 H 1.07998 * 120.00114 * 152.55019 * 18 17 16 20 20 C 1.39947 * 120.00180 * 332.56172 * 18 17 16 21 21 N 1.30820 * 120.00411 * 158.09886 * 20 18 17 22 22 Si 1.86805 * 119.99518 * 338.09953 * 20 18 17 23 23 H 1.48496 * 109.47149 * 92.48954 * 22 20 18 24 24 H 1.48507 * 109.46810 * 212.48962 * 22 20 18 25 25 H 1.48507 * 109.47093 * 332.48400 * 22 20 18 26 26 C 1.37594 * 119.87326 * 85.90848 * 13 10 9 27 27 H 1.08997 * 109.47096 * 299.99624 * 1 2 3 28 28 H 1.09011 * 109.46928 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47032 * 60.00077 * 1 2 3 30 30 H 1.08998 * 109.47320 * 300.00231 * 3 2 1 31 31 H 1.09005 * 109.46826 * 60.00316 * 3 2 1 32 32 H 1.09010 * 109.47147 * 305.12685 * 6 4 3 33 33 H 1.08996 * 109.47511 * 65.11739 * 6 4 3 34 34 H 1.09001 * 109.46687 * 303.66553 * 7 6 4 35 35 H 1.08997 * 109.46970 * 63.66610 * 7 6 4 36 36 H 0.96703 * 113.99698 * 179.97438 * 8 7 6 37 37 H 0.97000 * 120.00639 * 275.80005 * 9 4 3 38 38 H 1.07994 * 119.75512 * 0.02562 * 14 13 10 39 39 H 1.07999 * 119.88170 * 180.25457 * 15 14 13 40 40 H 1.07995 * 120.12947 * 179.74265 * 16 15 14 41 41 H 0.96994 * 119.99902 * 179.97438 * 21 20 18 42 42 H 1.08008 * 120.12941 * 359.97438 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9785 2.1766 0.0889 6 6 3.9790 0.3194 1.1806 7 6 5.5071 0.3031 1.2555 8 8 5.9232 -0.5726 2.3053 9 7 3.9757 0.5644 -1.2527 10 16 4.4640 1.5127 -2.5195 11 8 4.8752 0.6250 -3.5501 12 8 3.4534 2.4957 -2.6978 13 6 5.9100 2.3745 -1.9988 14 6 5.7999 3.6504 -1.4676 15 6 6.9283 4.3379 -1.0485 16 6 8.1737 3.7636 -1.1665 17 6 8.2980 2.4716 -1.7095 18 6 9.5720 1.8714 -1.8350 19 1 9.6664 0.7957 -1.8165 20 6 10.7108 2.6712 -1.9829 21 7 11.8896 2.1942 -1.6758 22 14 10.5476 4.4200 -2.6189 23 1 10.4102 5.3531 -1.4719 24 1 11.7567 4.7759 -3.4044 25 1 9.3464 4.5213 -3.4862 26 6 7.1448 1.7808 -2.1261 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8464 -0.8899 31 1 1.6885 1.8463 0.8901 32 1 3.5742 0.7315 2.1051 33 1 3.6110 -0.6975 1.0446 34 1 5.9135 -0.0479 0.3070 35 1 5.8717 1.3103 1.4566 36 1 6.8826 -0.6325 2.4104 37 1 3.9811 -0.4016 -1.3398 38 1 4.8272 4.1103 -1.3751 39 1 6.8305 5.3297 -0.6325 40 1 9.0519 4.3025 -0.8432 41 1 12.6789 2.7484 -1.7787 42 1 7.2287 0.7884 -2.5439 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619493713.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:29 Heat of formation + Delta-G solvation = -185.119899 kcal Electronic energy + Delta-G solvation = -27043.748311 eV Core-core repulsion = 23114.352812 eV Total energy + Delta-G solvation = -3929.395500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -39.71889 -39.53423 -38.26218 -37.89764 -36.93079 -36.42472 -35.65953 -32.53793 -31.87517 -31.82947 -29.42429 -27.25590 -26.88944 -24.10962 -24.06385 -22.69910 -22.03477 -20.79071 -19.73139 -18.62803 -18.35290 -18.05736 -17.54534 -17.07975 -16.90130 -16.68626 -16.45660 -16.20440 -16.12121 -15.67803 -15.25705 -14.83174 -14.70024 -14.67648 -14.03591 -13.91447 -13.60984 -13.51008 -13.36004 -13.21062 -13.12961 -13.07336 -12.92018 -12.61939 -12.51458 -12.42521 -12.10435 -11.99599 -11.87385 -11.80179 -11.52595 -11.05087 -10.87012 -10.55404 -10.46357 -10.01269 -9.69662 -9.00256 -6.58476 -0.56511 0.18690 0.65957 1.20614 1.36039 1.42368 2.00438 2.06518 2.40662 2.73217 2.91375 3.19151 3.31370 3.42693 3.93892 4.02985 4.10252 4.19825 4.34119 4.37146 4.44459 4.47746 4.48203 4.60387 4.62561 4.68521 4.76426 4.77797 4.85475 4.88223 4.93374 5.06200 5.17794 5.31821 5.35541 5.45013 5.65298 5.77180 5.99698 6.06590 6.24817 6.28790 6.58925 6.69373 6.82029 8.07486 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.016605 B = 0.004148 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1685.856504 B = 6748.145008 C = 7497.542827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.402 6.402 3 C 0.043 3.957 4 C 0.157 3.843 5 H 0.112 0.888 6 C -0.107 4.107 7 C 0.068 3.932 8 O -0.590 6.590 9 N -1.098 6.098 10 S 2.712 3.288 11 O -0.997 6.997 12 O -0.977 6.977 13 C -0.629 4.629 14 C -0.147 4.147 15 C -0.091 4.091 16 C -0.211 4.211 17 C 0.059 3.941 18 C -0.482 4.482 19 H 0.062 0.938 20 C 0.053 3.947 21 N -0.834 5.834 22 Si 0.954 3.046 23 H -0.246 1.246 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.121 4.121 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.041 0.959 30 H 0.059 0.941 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.040 0.960 35 H 0.046 0.954 36 H 0.393 0.607 37 H 0.426 0.574 38 H 0.145 0.855 39 H 0.143 0.857 40 H 0.109 0.891 41 H 0.297 0.703 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.497 1.225 6.888 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.321 6.321 3 C -0.035 4.035 4 C 0.050 3.950 5 H 0.129 0.871 6 C -0.146 4.146 7 C -0.009 4.009 8 O -0.398 6.398 9 N -0.859 5.859 10 S 2.804 3.196 11 O -0.988 6.988 12 O -0.967 6.967 13 C -0.718 4.718 14 C -0.167 4.167 15 C -0.110 4.110 16 C -0.231 4.231 17 C 0.055 3.945 18 C -0.511 4.511 19 H 0.080 0.920 20 C -0.164 4.164 21 N -0.459 5.459 22 Si 0.777 3.223 23 H -0.170 1.170 24 H -0.201 1.201 25 H -0.183 1.183 26 C -0.142 4.142 27 H 0.073 0.927 28 H 0.113 0.887 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.100 0.900 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.242 0.758 37 H 0.263 0.737 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.127 0.873 41 H 0.108 0.892 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -17.146 1.186 6.179 18.263 hybrid contribution 1.799 0.308 -0.139 1.831 sum -15.346 1.495 6.040 16.560 Atomic orbital electron populations 1.22914 0.79980 1.03621 1.00717 1.87843 1.20906 1.27757 1.95598 1.23161 0.92458 0.85459 1.02450 1.21012 0.93319 0.97794 0.82875 0.87067 1.21595 0.93368 1.01852 0.97778 1.22261 0.96022 0.92987 0.89674 1.86333 1.29447 1.68261 1.55755 1.55327 1.81333 1.20178 1.29096 1.01073 0.73293 0.72718 0.72483 1.93523 1.83865 1.65860 1.55533 1.93506 1.56719 1.61414 1.85016 1.30354 1.16052 1.08776 1.16622 1.20612 0.99470 0.93237 1.03393 1.21153 0.91862 0.99748 0.98192 1.21548 0.97867 0.97580 1.06058 1.17883 0.93089 0.92679 0.90814 1.19490 0.90510 0.95373 1.45720 0.91953 1.26773 0.94052 1.03857 0.91697 1.69720 1.00799 1.41021 1.34326 0.85696 0.78692 0.77863 0.80084 1.17049 1.20062 1.18326 1.20797 0.91613 1.00159 1.01628 0.92681 0.88739 0.94004 0.92228 0.89587 0.88679 0.90033 0.94171 0.93532 0.75773 0.73680 0.83691 0.83960 0.87349 0.89246 0.87192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -8.19 9.87 -148.98 -1.47 -9.66 16 3 C 0.04 0.82 5.77 71.98 0.42 1.24 16 4 C 0.16 3.37 2.58 44.99 0.12 3.49 16 5 H 0.11 2.23 7.42 -2.39 -0.02 2.21 16 6 C -0.11 -2.27 4.90 30.59 0.15 -2.12 16 7 C 0.07 1.73 6.98 71.98 0.50 2.24 16 8 O -0.59 -15.20 13.66 -148.98 -2.04 -17.23 16 9 N -1.10 -27.87 4.81 -169.39 -0.81 -28.69 16 10 S 2.71 89.60 5.64 -56.49 -0.32 89.28 16 11 O -1.00 -39.74 17.38 -128.00 -2.22 -41.96 16 12 O -0.98 -33.46 16.48 -128.00 -2.11 -35.56 16 13 C -0.63 -23.62 5.74 22.22 0.13 -23.49 16 14 C -0.15 -5.06 9.15 22.46 0.21 -4.86 16 15 C -0.09 -3.26 10.02 22.22 0.22 -3.03 16 16 C -0.21 -9.06 7.38 22.73 0.17 -8.90 16 17 C 0.06 2.82 5.13 -21.29 -0.11 2.71 16 18 C -0.48 -25.65 9.55 23.46 0.22 -25.43 16 19 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 20 C 0.05 2.69 5.36 85.26 0.46 3.15 16 21 N -0.83 -43.36 13.93 21.83 0.30 -43.05 16 22 Si 0.95 40.11 24.64 68.60 1.69 41.80 16 23 H -0.25 -9.41 6.51 99.48 0.65 -8.77 16 24 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 25 H -0.26 -11.36 7.09 99.48 0.70 -10.66 16 26 C -0.12 -5.35 9.26 22.73 0.21 -5.14 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 29 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.06 1.26 7.67 -2.39 -0.02 1.24 16 31 H 0.09 1.20 8.14 -2.38 -0.02 1.18 16 32 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.08 1.83 7.73 -2.39 -0.02 1.81 16 34 H 0.04 1.11 7.66 -2.39 -0.02 1.10 16 35 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.39 7.80 9.12 -74.06 -0.68 7.12 16 37 H 0.43 9.85 8.85 -96.75 -0.86 9.00 16 38 H 0.15 4.11 7.51 -2.91 -0.02 4.09 16 39 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16 40 H 0.11 4.59 4.60 -2.91 -0.01 4.58 16 41 H 0.30 13.80 8.30 -92.71 -0.77 13.03 16 42 H 0.11 4.89 7.70 -2.91 -0.02 4.86 16 Total: -1.00 -66.73 361.46 -3.57 -70.30 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.53 Total: 33.32 kcal Atomic # 6 Polarization: -62.48 SS G_CDS: 3.94 Total: -58.54 kcal Atomic # 7 Polarization: -71.23 SS G_CDS: -0.51 Total: -71.74 kcal Atomic # 8 Polarization: -96.58 SS G_CDS: -7.84 Total: -104.41 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.69 Total: 41.80 kcal Atomic # 16 Polarization: 89.60 SS G_CDS: -0.32 Total: 89.28 kcal Total: -66.73 -3.57 -70.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493713.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.817 kcal (2) G-P(sol) polarization free energy of solvation -66.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds