Wall clock time and date at job start Tue Mar 31 2020 05:32:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99912 * 2 1 4 4 C 1.52996 * 109.47435 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47330 * 174.99727 * 4 3 2 6 6 C 1.53000 * 109.47164 * 54.99664 * 4 3 2 7 7 C 1.52997 * 109.47446 * 176.84762 * 6 4 3 8 8 O 1.42899 * 109.47433 * 184.86331 * 7 6 4 9 9 N 1.46498 * 109.46832 * 295.00042 * 4 3 2 10 10 S 1.65606 * 119.99742 * 245.10586 * 9 4 3 11 11 O 1.42098 * 106.40142 * 176.02123 * 10 9 4 12 12 O 1.42097 * 106.40202 * 308.93519 * 10 9 4 13 13 C 1.76194 * 107.21612 * 62.48024 * 10 9 4 14 14 C 1.38659 * 119.87659 * 269.72486 * 13 10 9 15 15 C 1.38609 * 120.50387 * 179.72443 * 14 13 10 16 16 C 1.37637 * 120.24811 * 0.55000 * 15 14 13 17 17 C 1.40698 * 119.74115 * 359.72940 * 16 15 14 18 18 C 1.41399 * 120.24377 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00321 * 150.64346 * 18 17 16 20 20 C 1.39946 * 120.00291 * 330.65086 * 18 17 16 21 21 N 1.30822 * 120.00629 * 162.22318 * 20 18 17 22 22 Si 1.86805 * 119.99519 * 342.22397 * 20 18 17 23 23 H 1.48496 * 109.47442 * 94.38157 * 22 20 18 24 24 H 1.48501 * 109.46956 * 214.38363 * 22 20 18 25 25 H 1.48498 * 109.47067 * 334.37938 * 22 20 18 26 26 C 1.37591 * 119.87943 * 90.00158 * 13 10 9 27 27 H 1.09011 * 109.46688 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47012 * 299.99973 * 1 2 3 29 29 H 1.09002 * 109.47202 * 60.00593 * 1 2 3 30 30 H 1.09004 * 109.47000 * 300.00278 * 3 2 1 31 31 H 1.09000 * 109.47006 * 59.99683 * 3 2 1 32 32 H 1.09000 * 109.47015 * 296.85081 * 6 4 3 33 33 H 1.09006 * 109.47358 * 56.84573 * 6 4 3 34 34 H 1.09007 * 109.46717 * 304.86053 * 7 6 4 35 35 H 1.08998 * 109.47003 * 64.85454 * 7 6 4 36 36 H 0.96698 * 113.99846 * 180.02562 * 8 7 6 37 37 H 0.96995 * 120.00372 * 65.11153 * 9 4 3 38 38 H 1.07999 * 119.74602 * 359.97438 * 14 13 10 39 39 H 1.07995 * 119.87803 * 180.25585 * 15 14 13 40 40 H 1.07998 * 120.13335 * 179.74476 * 16 15 14 41 41 H 0.96996 * 119.99912 * 179.97438 * 21 20 18 42 42 H 1.08005 * 120.12539 * 359.97352 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 -0.0006 5 1 3.9784 2.1766 -0.0903 6 6 3.9781 0.3198 -1.1826 7 6 5.5063 0.2636 -1.2294 8 8 5.9213 -0.4489 -2.3964 9 7 3.9766 0.5641 1.2509 10 16 4.8933 1.4285 2.3256 11 8 5.0750 0.5932 3.4607 12 8 5.9738 1.9755 1.5823 13 6 3.9177 2.7935 2.8634 14 6 3.9719 3.9954 2.1740 15 6 3.2056 5.0759 2.5823 16 6 2.3897 4.9698 3.6856 17 6 2.3311 3.7569 4.3963 18 6 1.4961 3.6359 5.5310 19 1 1.0742 2.6764 5.7913 20 6 1.2160 4.7596 6.3167 21 7 0.1976 4.7465 7.1378 22 14 2.2965 6.2784 6.1931 23 1 1.7011 7.2320 5.2230 24 1 2.3953 6.9254 7.5261 25 1 3.6523 5.8852 5.7322 26 6 3.1091 2.6648 3.9692 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5137 -0.8900 30 1 1.6885 1.8463 -0.8900 31 1 1.6885 1.8463 0.8900 32 1 3.5809 -0.6883 -1.0640 33 1 3.6018 0.7518 -2.1100 34 1 5.9063 1.2771 -1.2610 35 1 5.8785 -0.2462 -0.3407 36 1 6.8807 -0.5240 -2.4910 37 1 3.7319 -0.3532 1.4500 38 1 4.6130 4.0891 1.3099 39 1 3.2525 6.0059 2.0354 40 1 1.7966 5.8141 4.0045 41 1 0.0038 5.5253 7.6826 42 1 3.0715 1.7290 4.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493714.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:39 Heat of formation + Delta-G solvation = -159.665182 kcal Electronic energy + Delta-G solvation = -26952.527756 eV Core-core repulsion = 23024.236055 eV Total energy + Delta-G solvation = -3928.291700 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -38.66456 -37.99106 -37.07920 -36.76439 -35.47998 -35.42386 -33.85305 -30.83081 -30.78262 -30.23886 -28.54909 -26.09396 -25.45765 -23.15389 -22.47347 -21.20013 -20.88093 -19.41639 -18.19210 -17.50523 -17.16969 -16.57795 -16.37738 -16.00661 -15.60818 -15.38270 -15.28762 -15.02447 -14.79200 -14.21045 -13.90065 -13.83889 -13.23942 -12.94489 -12.88496 -12.71413 -12.31159 -12.11290 -11.93878 -11.77899 -11.74204 -11.68952 -11.53083 -11.37184 -11.21069 -11.10888 -10.95351 -10.84765 -10.42259 -10.08341 -9.99530 -9.84587 -9.67224 -9.48345 -9.24201 -8.35206 -7.96029 -7.15126 -4.71111 0.84094 1.83096 2.34266 2.93877 3.06947 3.15308 3.34539 3.73301 3.79475 4.02931 4.04470 4.27083 4.74626 4.86527 4.95341 5.04368 5.11171 5.20414 5.31173 5.33728 5.38812 5.44536 5.57180 5.65329 5.70697 5.76192 5.82112 5.92523 6.05881 6.12897 6.24647 6.39184 6.50854 6.79104 6.98929 7.09187 7.12045 7.15723 7.31430 7.54701 7.54821 7.70168 8.11351 8.35182 8.54506 9.86567 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.015950 B = 0.004076 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.016818 B = 6868.142112 C = 7615.650151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.046 3.954 4 C 0.165 3.835 5 H 0.106 0.894 6 C -0.120 4.120 7 C 0.072 3.928 8 O -0.579 6.579 9 N -1.111 6.111 10 S 2.685 3.315 11 O -0.967 6.967 12 O -0.971 6.971 13 C -0.625 4.625 14 C -0.163 4.163 15 C -0.090 4.090 16 C -0.201 4.201 17 C 0.074 3.926 18 C -0.441 4.441 19 H 0.096 0.904 20 C 0.083 3.917 21 N -0.798 5.798 22 Si 0.908 3.092 23 H -0.268 1.268 24 H -0.286 1.286 25 H -0.243 1.243 26 C -0.100 4.100 27 H 0.083 0.917 28 H 0.045 0.955 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.378 0.622 37 H 0.420 0.580 38 H 0.111 0.889 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.288 0.712 42 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.111 -4.670 -13.857 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C -0.032 4.032 4 C 0.057 3.943 5 H 0.124 0.876 6 C -0.160 4.160 7 C -0.005 4.005 8 O -0.384 6.384 9 N -0.869 5.869 10 S 2.780 3.220 11 O -0.958 6.958 12 O -0.961 6.961 13 C -0.717 4.717 14 C -0.184 4.184 15 C -0.109 4.109 16 C -0.220 4.220 17 C 0.069 3.931 18 C -0.469 4.469 19 H 0.113 0.887 20 C -0.137 4.137 21 N -0.421 5.421 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.213 1.213 25 H -0.167 1.167 26 C -0.121 4.121 27 H 0.102 0.898 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.225 0.775 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.099 0.901 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 3.296 -4.849 -13.501 14.719 hybrid contribution -0.186 1.239 0.467 1.337 sum 3.110 -3.610 -13.034 13.878 Atomic orbital electron populations 1.22740 0.81037 1.02575 1.00193 1.87822 1.19627 1.27479 1.95480 1.23031 0.93126 0.85360 1.01685 1.20751 0.92708 0.97261 0.83592 0.87629 1.21727 0.94322 1.02258 0.97651 1.22242 0.95382 0.95829 0.87083 1.86418 1.27695 1.78667 1.45624 1.55625 1.73334 1.26312 1.31640 1.01859 0.73795 0.73792 0.72589 1.93561 1.85296 1.67259 1.49667 1.93526 1.50523 1.79787 1.72259 1.29946 1.18189 1.15265 1.08258 1.20049 1.03733 0.92806 1.01844 1.20692 0.96380 0.97178 0.96693 1.21310 1.03960 0.99003 0.97745 1.17789 0.90830 0.91271 0.93163 1.19544 1.22906 0.97504 1.06961 0.88654 1.26173 0.93927 0.99975 0.93603 1.69668 1.22047 1.31578 1.18849 0.86362 0.82917 0.80147 0.77195 1.19407 1.21320 1.16652 1.20847 0.95645 1.00062 0.95569 0.89799 0.93657 0.94289 0.92278 0.91347 0.89710 0.90208 0.92833 0.93478 0.77528 0.74514 0.87084 0.87896 0.87590 0.90098 0.86256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.69 9.83 -35.23 -0.35 -5.03 16 3 C 0.05 0.55 5.77 37.16 0.21 0.76 16 4 C 0.16 1.97 2.70 -67.93 -0.18 1.78 16 5 H 0.11 1.21 7.67 -51.93 -0.40 0.81 16 6 C -0.12 -1.34 5.02 -26.73 -0.13 -1.48 16 7 C 0.07 0.84 6.86 37.16 0.25 1.09 16 8 O -0.58 -6.43 13.66 -35.23 -0.48 -6.91 16 9 N -1.11 -14.84 4.79 -4.89 -0.02 -14.87 16 10 S 2.68 45.98 5.60 -107.50 -0.60 45.38 16 11 O -0.97 -19.33 17.27 -57.18 -0.99 -20.31 16 12 O -0.97 -17.49 16.88 -57.18 -0.97 -18.45 16 13 C -0.63 -12.31 5.89 -39.66 -0.23 -12.55 16 14 C -0.16 -3.10 9.53 -39.29 -0.37 -3.47 16 15 C -0.09 -1.78 10.02 -39.66 -0.40 -2.18 16 16 C -0.20 -4.48 7.18 -38.87 -0.28 -4.76 16 17 C 0.07 1.76 5.12 -106.82 -0.55 1.21 16 18 C -0.44 -11.32 9.58 -37.74 -0.36 -11.68 16 19 H 0.10 2.55 8.06 -52.49 -0.42 2.12 16 20 C 0.08 2.08 5.41 -17.34 -0.09 1.99 16 21 N -0.80 -20.25 13.93 55.55 0.77 -19.47 16 22 Si 0.91 19.74 24.49 -169.99 -4.16 15.58 16 23 H -0.27 -5.55 6.66 56.52 0.38 -5.18 16 24 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 25 H -0.24 -5.48 6.87 56.52 0.39 -5.09 16 26 C -0.10 -2.23 9.26 -38.88 -0.36 -2.59 16 27 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 28 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.99 7.67 -51.93 -0.40 0.59 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 35 H 0.05 0.56 7.84 -51.93 -0.41 0.15 16 36 H 0.38 2.57 9.12 45.56 0.42 2.98 16 37 H 0.42 5.06 8.96 -34.47 -0.31 4.75 16 38 H 0.11 1.83 7.59 -52.49 -0.40 1.44 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.11 2.34 4.61 -52.49 -0.24 2.09 16 41 H 0.29 6.60 8.30 -40.82 -0.34 6.26 16 42 H 0.12 2.59 7.60 -52.48 -0.40 2.19 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -30.92 362.90 -7.82 -38.75 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -5.11 Total: 10.31 kcal Atomic # 6 Polarization: -29.05 SS G_CDS: -1.38 Total: -30.43 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.75 Total: -34.34 kcal Atomic # 8 Polarization: -47.93 SS G_CDS: -2.78 Total: -50.71 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.16 Total: 15.58 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.60 Total: 45.38 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.92 -7.82 -38.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493714.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.918 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds