Wall clock time and date at job start Tue Mar 31 2020 05:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42900 * 114.00054 * 2 1 4 4 C 1.52999 * 109.47350 * 180.02562 * 3 2 1 5 5 H 1.08999 * 109.47382 * 54.99790 * 4 3 2 6 6 O 1.42906 * 109.46732 * 295.00182 * 4 3 2 7 7 C 1.52997 * 109.47503 * 175.00371 * 4 3 2 8 8 C 1.53003 * 109.47154 * 184.99923 * 7 4 3 9 9 N 1.46503 * 109.46577 * 179.97438 * 8 7 4 10 10 S 1.65604 * 119.99591 * 164.99671 * 9 8 7 11 11 O 1.42096 * 106.40123 * 178.53768 * 10 9 8 12 12 O 1.42098 * 106.40191 * 311.46324 * 10 9 8 13 13 C 1.76205 * 107.21489 * 64.99906 * 10 9 8 14 14 C 1.38653 * 119.87557 * 269.72365 * 13 10 9 15 15 C 1.38622 * 120.49830 * 179.72359 * 14 13 10 16 16 C 1.37638 * 120.24527 * 0.55680 * 15 14 13 17 17 C 1.40690 * 119.74851 * 359.71983 * 16 15 14 18 18 C 1.41393 * 120.24633 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00452 * 155.26272 * 18 17 16 20 20 C 1.39945 * 120.00039 * 335.25575 * 18 17 16 21 21 N 1.30823 * 119.99968 * 342.24660 * 20 18 17 22 22 Si 1.86800 * 120.00124 * 162.23702 * 20 18 17 23 23 H 1.48500 * 109.46835 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47084 * 120.00661 * 22 20 18 25 25 H 1.48502 * 109.47262 * 240.00958 * 22 20 18 26 26 C 1.37601 * 119.87275 * 90.00613 * 13 10 9 27 27 H 1.08996 * 109.46881 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46927 * 59.99702 * 1 2 3 29 29 H 1.08997 * 109.46748 * 299.99878 * 1 2 3 30 30 H 1.09007 * 109.47186 * 299.99882 * 3 2 1 31 31 H 1.08990 * 109.47207 * 60.00066 * 3 2 1 32 32 H 0.96697 * 113.99826 * 299.99721 * 6 4 3 33 33 H 1.09001 * 109.46597 * 304.99236 * 7 4 3 34 34 H 1.08995 * 109.47454 * 64.99666 * 7 4 3 35 35 H 1.09001 * 109.46808 * 299.99185 * 8 7 4 36 36 H 1.08995 * 109.47150 * 59.99556 * 8 7 4 37 37 H 0.96995 * 120.00626 * 344.99443 * 9 8 7 38 38 H 1.07997 * 119.75495 * 0.02562 * 14 13 10 39 39 H 1.08003 * 119.87507 * 180.25894 * 15 14 13 40 40 H 1.08009 * 120.12221 * 179.75121 * 16 15 14 41 41 H 0.97000 * 119.99972 * 179.97438 * 21 20 18 42 42 H 1.07995 * 120.12942 * 359.96657 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 -0.0006 5 1 3.8508 0.5685 -0.8427 6 8 3.9658 0.5792 1.2202 7 6 4.1573 2.5769 -0.1263 8 6 5.6766 2.4474 -0.2523 9 7 6.2719 3.7806 -0.3732 10 16 7.9007 3.9831 -0.1527 11 8 8.1662 5.3624 -0.3678 12 8 8.2295 3.3070 1.0531 13 6 8.7148 3.1115 -1.4497 14 6 9.0695 1.7828 -1.2725 15 6 9.7053 1.0831 -2.2863 16 6 10.0018 1.7053 -3.4777 17 6 9.6517 3.0548 -3.6666 18 6 9.9508 3.7041 -4.8865 19 1 9.3686 4.5577 -5.2008 20 6 11.0013 3.2407 -5.6867 21 7 11.9151 2.4559 -5.1764 22 14 11.0985 3.7427 -7.4833 23 1 9.9531 4.6288 -7.8123 24 1 12.3710 4.4685 -7.7263 25 1 11.0488 2.5304 -8.3395 26 6 9.0014 3.7536 -2.6325 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 1.6887 1.8463 0.8899 32 1 3.7191 1.0745 2.0132 33 1 3.7604 3.0735 -1.0117 34 1 3.9150 3.1644 0.7592 35 1 6.0736 1.9508 0.6331 36 1 5.9190 1.8599 -1.1378 37 1 5.7122 4.5446 -0.5824 38 1 8.8444 1.2879 -0.3394 39 1 9.9733 0.0473 -2.1389 40 1 10.5008 1.1593 -4.2648 41 1 12.6430 2.1344 -5.7311 42 1 8.7279 4.7897 -2.7669 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494237.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:49 Heat of formation + Delta-G solvation = -163.803361 kcal Electronic energy + Delta-G solvation = -25623.559284 eV Core-core repulsion = 21695.088139 eV Total energy + Delta-G solvation = -3928.471145 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 329.118 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -38.98688 -37.63374 -37.18714 -36.63525 -35.31181 -35.20652 -33.83654 -31.53974 -30.06992 -29.78446 -28.49197 -26.24475 -25.48163 -23.17154 -21.96949 -21.71839 -20.96832 -19.11012 -17.99502 -17.33640 -16.89965 -16.65610 -16.39447 -16.00367 -15.91901 -15.38196 -15.13107 -14.92262 -14.73485 -14.29033 -13.98726 -13.45387 -13.41043 -13.27299 -12.58979 -12.54647 -12.46510 -11.93719 -11.87101 -11.70509 -11.53883 -11.51436 -11.39918 -11.39094 -11.33867 -11.03749 -11.00870 -10.86922 -10.58456 -10.24175 -10.04816 -9.78841 -9.67361 -9.35290 -9.16535 -8.03054 -7.69472 -6.91873 -4.53005 1.02436 2.20323 2.63128 3.00326 3.04093 3.06804 3.24269 3.62382 3.83300 4.17315 4.24456 4.43505 4.47439 4.69324 4.78743 4.85968 4.92224 5.00902 5.02749 5.08914 5.14490 5.31987 5.39611 5.45276 5.63377 5.70963 5.95436 6.05281 6.13198 6.20516 6.66434 6.76743 6.77002 6.84940 7.03595 7.17436 7.23698 7.39195 7.45897 7.73628 7.81014 7.94839 8.40635 8.67521 8.72313 10.03962 Molecular weight = 329.12amu Principal moments of inertia in cm(-1) A = 0.013445 B = 0.002899 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.036040 B = 9657.849300 C =10664.691487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.381 6.381 3 C 0.029 3.971 4 C 0.110 3.890 5 H 0.113 0.887 6 O -0.548 6.548 7 C -0.156 4.156 8 C 0.123 3.877 9 N -1.123 6.123 10 S 2.690 3.310 11 O -0.973 6.973 12 O -0.974 6.974 13 C -0.632 4.632 14 C -0.147 4.147 15 C -0.121 4.121 16 C -0.117 4.117 17 C 0.091 3.909 18 C -0.461 4.461 19 H 0.082 0.918 20 C 0.074 3.926 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.259 1.259 24 H -0.273 1.273 25 H -0.271 1.271 26 C -0.125 4.125 27 H 0.086 0.914 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.059 0.941 31 H 0.052 0.948 32 H 0.373 0.627 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.412 0.588 38 H 0.107 0.893 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.283 0.717 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.033 -1.835 6.288 19.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.300 6.300 3 C -0.048 4.048 4 C 0.050 3.950 5 H 0.130 0.870 6 O -0.353 6.353 7 C -0.195 4.195 8 C -0.003 4.003 9 N -0.881 5.881 10 S 2.786 3.214 11 O -0.963 6.963 12 O -0.964 6.964 13 C -0.724 4.724 14 C -0.168 4.168 15 C -0.140 4.140 16 C -0.137 4.137 17 C 0.087 3.913 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.144 4.144 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.183 1.183 24 H -0.199 1.199 25 H -0.196 1.196 26 C -0.147 4.147 27 H 0.105 0.895 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.220 0.780 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.245 0.755 38 H 0.125 0.875 39 H 0.117 0.883 40 H 0.142 0.858 41 H 0.094 0.906 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.961 -2.230 6.569 18.325 hybrid contribution -0.465 0.790 -1.304 1.594 sum -17.426 -1.440 5.265 18.261 Atomic orbital electron populations 1.22766 0.81163 1.02890 0.99838 1.87971 1.19476 1.27181 1.95343 1.23336 0.95115 0.85414 1.00930 1.21900 0.90055 0.93885 0.89173 0.86954 1.86682 1.80811 1.52630 1.15184 1.22413 0.95974 0.97306 1.03796 1.21153 0.92718 0.83356 1.03106 1.55606 1.27440 1.15286 1.89798 1.01630 0.71982 0.73341 0.74466 1.93538 1.83474 1.32408 1.86928 1.93514 1.82584 1.76179 1.44098 1.29724 1.19680 1.07403 1.15592 1.20118 1.04974 0.92758 0.98947 1.20827 1.00166 0.98341 0.94698 1.21642 1.00592 0.94694 0.96783 1.17689 0.90067 0.91550 0.91990 1.19625 1.13302 1.13382 1.02698 0.89941 1.25942 0.94112 0.93539 1.00794 1.69790 1.08593 1.26233 1.37247 0.86200 0.79290 0.79412 0.81523 1.18271 1.19853 1.19618 1.20747 1.04318 0.97862 0.91727 0.89516 0.94108 0.94173 0.92275 0.92973 0.78024 0.89929 0.90560 0.89497 0.91124 0.75512 0.87482 0.88321 0.85780 0.90599 0.87083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.38 -3.82 10.67 -40.09 -0.43 -4.25 16 3 C 0.03 0.23 5.57 37.16 0.21 0.43 16 4 C 0.11 0.99 3.25 -26.73 -0.09 0.90 16 5 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 6 O -0.55 -5.70 12.84 -40.09 -0.51 -6.21 16 7 C -0.16 -1.29 5.03 -26.73 -0.13 -1.42 16 8 C 0.12 1.48 6.12 -4.04 -0.02 1.46 16 9 N -1.12 -15.08 6.00 -10.61 -0.06 -15.15 16 10 S 2.69 49.78 5.74 -107.50 -0.62 49.16 16 11 O -0.97 -20.35 17.26 -57.17 -0.99 -21.34 16 12 O -0.97 -19.86 16.73 -57.17 -0.96 -20.82 16 13 C -0.63 -13.75 5.94 -39.66 -0.24 -13.98 16 14 C -0.15 -3.19 9.53 -39.29 -0.37 -3.56 16 15 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 16 C -0.12 -2.92 8.70 -38.88 -0.34 -3.26 16 17 C 0.09 2.34 5.57 -106.83 -0.60 1.74 16 18 C -0.46 -11.81 9.05 -37.74 -0.34 -12.16 16 19 H 0.08 2.02 7.91 -52.48 -0.41 1.61 16 20 C 0.07 1.80 5.14 -17.34 -0.09 1.71 16 21 N -0.79 -19.88 10.97 55.55 0.61 -19.27 16 22 Si 0.91 18.04 29.59 -169.99 -5.03 13.01 16 23 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 26 C -0.13 -3.00 9.26 -38.87 -0.36 -3.36 16 27 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.37 2.49 9.04 45.56 0.41 2.90 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.09 1.13 7.43 -51.93 -0.39 0.74 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.41 4.43 8.65 -34.47 -0.30 4.14 16 38 H 0.11 2.11 7.59 -52.49 -0.40 1.71 16 39 H 0.10 1.95 8.06 -52.48 -0.42 1.52 16 40 H 0.12 3.14 6.18 -52.48 -0.32 2.82 16 41 H 0.28 6.40 8.30 -40.82 -0.34 6.07 16 42 H 0.11 2.55 7.60 -52.49 -0.40 2.15 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -33.22 369.36 -9.25 -42.47 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.17 Total: 10.13 kcal Atomic # 6 Polarization: -31.65 SS G_CDS: -1.66 Total: -33.31 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.55 Total: -34.42 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: -2.89 Total: -52.62 kcal Atomic # 14 Polarization: 18.04 SS G_CDS: -5.03 Total: 13.01 kcal Atomic # 16 Polarization: 49.78 SS G_CDS: -0.62 Total: 49.16 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.22 -9.25 -42.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494237.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -121.330 kcal (2) G-P(sol) polarization free energy of solvation -33.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds